genome.fa.s19.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  134  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41049144--41049373	94	2.4	94	79	7	227	41	14	3	40	1.62
41062240--41062274	18	1.9	18	88	11	54	37	0	0	62	0.95
41063172--41063217	21	2.2	21	84	7	58	45	4	4	45	1.43
41063658--41063702	23	2.0	23	86	4	65	33	0	4	62	1.15
41069750--41069793	13	3.5	13	81	3	54	65	2	6	25	1.28
41072829--41072964	67	2.0	68	90	4	213	41	22	2	33	1.69
41073293--41073326	9	3.8	9	92	7	52	26	0	0	73	0.83
41091567--41091813	50	4.8	50	78	6	212	25	27	19	27	1.99
41093787--41093839	25	2.1	25	92	0	88	30	9	26	33	1.88
41093785--41093843	25	2.3	25	85	2	82	30	11	25	32	1.92
41099515--41099567	20	2.5	22	69	6	56	24	22	28	24	2.00
41103869--41104054	41	4.6	41	86	6	245	25	23	26	24	2.00
41105497--41105672	45	3.9	45	78	7	196	23	21	13	42	1.88
41105505--41105672	89	1.9	89	84	0	228	23	20	12	42	1.86
41108514--41108542	13	2.2	13	100	0	58	41	17	20	20	1.90
41114113--41114137	7	3.6	7	100	0	50	12	0	0	88	0.53
41123715--41123768	27	2.0	28	82	10	67	44	9	0	46	1.35
41130119--41130157	20	2.0	20	89	0	60	20	41	12	25	1.88
41130120--41130164	20	2.2	20	84	0	54	24	42	11	22	1.86
41132004--41132315	89	3.5	89	87	4	443	57	13	5	23	1.56
41132811--41132944	54	2.5	54	75	8	137	46	20	18	14	1.84
41133546--41133717	4	41.8	4	71	22	76	69	0	30	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41133544--41133714	10	16.7	10	70	11	105	69	0	30	0	0.93
41133537--41133659	5	25.0	5	69	11	67	67	0	32	0	0.91
41133585--41133681	31	3.2	29	80	12	90	70	0	28	1	0.94
41133546--41133687	41	3.4	42	91	4	209	69	0	30	0	0.94
41133546--41133717	7	20.9	8	66	26	76	69	0	30	0	0.93
41134248--41134285	13	2.9	13	85	11	51	63	0	0	36	0.95
41134043--41134514	157	3.0	153	78	11	515	51	6	10	31	1.61
41136163--41136188	12	2.2	12	100	0	52	26	46	26	0	1.53
41138327--41138363	10	3.6	10	88	3	56	0	29	0	70	0.88
41138647--41138684	12	2.9	14	76	15	53	23	0	15	60	1.35
41138875--41138913	20	2.1	18	85	9	51	33	10	17	38	1.84
41138932--41138988	6	9.5	6	98	0	96	33	12	0	54	1.38
41140358--41140401	18	2.4	19	92	3	72	59	0	2	38	1.10
41140342--41140368	8	3.4	8	100	0	54	66	0	0	33	0.92
41140329--41140410	19	4.6	18	71	10	51	63	0	2	34	1.08
41140692--41140728	5	7.2	5	96	3	65	0	56	43	0	0.99
41140756--41140824	11	6.4	11	73	20	65	39	2	0	57	1.13
41140756--41140797	12	3.5	12	81	9	50	40	2	0	57	1.12
41140765--41140839	31	2.4	32	86	13	111	40	2	0	57	1.13
41140746--41140825	42	1.9	42	100	0	160	37	2	0	60	1.11
41140807--41140846	21	1.9	21	89	0	62	37	2	0	60	1.11
41140806--41140864	22	2.8	21	80	14	59	42	1	1	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41142809--41142877	34	2.0	34	94	0	120	30	8	13	47	1.72
41143569--41143615	20	2.3	20	100	0	94	10	17	25	46	1.79
41144884--41144924	21	2.0	21	100	0	82	34	0	9	56	1.32
41145005--41145195	61	3.2	61	73	11	230	42	1	4	51	1.29
41144955--41145230	120	2.3	120	98	0	534	42	0	3	52	1.24
41145369--41145466	45	2.2	44	85	5	126	35	26	5	32	1.78
41156616--41156647	16	2.0	16	100	0	64	25	6	0	68	1.12
41157726--41157833	56	1.9	55	94	5	191	37	9	12	39	1.76
41158611--41159567	477	2.0	477	97	0	1788	29	21	16	31	1.95
41164304--41164544	121	2.0	121	98	0	464	31	17	9	41	1.81
41171258--41171309	26	2.0	26	92	0	86	28	34	21	15	1.94
41171270--41171420	72	2.1	71	91	2	241	30	29	16	23	1.96
41171433--41171483	26	2.0	26	96	0	93	29	35	23	11	1.90
41171339--41171561	103	2.2	104	92	2	369	31	31	18	17	1.95
41171888--41171951	30	2.2	29	81	10	76	29	28	6	35	1.82
41171895--41171951	30	1.9	30	85	3	80	29	24	7	38	1.82
41178600--41178651	26	2.0	26	92	0	86	28	34	21	15	1.94
41178612--41178794	71	2.6	68	82	13	205	30	31	16	21	1.96
41178769--41178819	26	2.0	26	96	0	93	29	35	23	11	1.90
41178687--41178896	102	2.1	98	86	7	289	31	31	18	17	1.94
41199310--41199567	40	6.6	40	85	6	271	25	28	20	24	1.99
41199310--41199567	116	2.2	116	80	8	283	25	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41199310--41199514	76	2.7	77	87	4	254	25	29	20	23	1.99
41199499--41199576	40	1.9	41	82	10	97	26	28	21	23	1.99
41207218--41207480	120	2.2	119	82	4	316	26	28	20	24	1.99
41207218--41207427	40	5.3	40	92	0	314	26	29	20	23	1.99
41207221--41207480	80	3.3	80	86	3	267	25	28	21	24	1.99
41207412--41207489	40	1.9	41	82	10	97	26	28	21	23	1.99
41211518--41211627	51	2.2	51	86	0	157	21	17	17	43	1.88
41217017--41217058	20	2.1	20	86	0	57	19	16	14	50	1.79
41222039--41222238	49	4.2	48	76	7	181	28	20	27	23	1.99
41235785--41236116	22	15.1	21	72	17	232	31	0	12	55	1.42
41235783--41236022	20	11.5	20	73	15	114	31	0	13	55	1.42
41235882--41236115	41	5.2	42	75	16	127	30	0	13	55	1.44
41235919--41236135	48	4.5	49	85	4	289	32	0	12	54	1.44
41235997--41236140	27	5.8	26	78	17	162	31	0	12	55	1.42
41235923--41236135	97	2.2	95	93	3	365	31	0	12	54	1.44
41236336--41236409	38	1.9	38	97	0	139	54	4	2	39	1.34
41236520--41236561	16	2.7	15	85	7	57	38	2	2	57	1.25
41238188--41238212	6	4.2	6	100	0	50	32	36	32	0	1.58
41241545--41241600	22	2.5	22	97	0	103	0	32	3	64	1.11
41241550--41241587	18	2.2	17	86	13	51	0	34	5	60	1.19
41241661--41241761	27	3.7	27	90	0	157	22	36	20	19	1.95
41241961--41247333	807	6.7	807	95	1	9509	36	16	15	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41249845--41250203	47	7.6	47	92	1	547	32	8	29	29	1.87
41249832--41250203	96	3.9	94	82	8	407	32	8	29	29	1.86
41260347--41260376	12	2.5	12	100	0	60	80	0	6	13	0.91
41262154--41262205	24	2.2	24	89	0	77	50	9	3	36	1.54
41274031--41274087	24	2.4	24	85	5	71	47	10	5	36	1.61
41274043--41274094	24	2.2	24	85	0	68	50	7	3	38	1.50
41274771--41274820	23	2.5	20	76	20	50	58	2	4	36	1.29
41277749--41277932	40	4.7	40	80	8	207	24	21	27	26	1.99
41285292--41285375	42	2.0	42	86	2	116	25	27	2	45	1.66
41286878--41286922	20	2.3	19	81	11	54	48	4	20	26	1.68
41290644--41290741	27	3.5	28	90	2	135	26	13	28	31	1.94
41290672--41290754	27	3.0	27	87	5	96	30	12	25	32	1.92
41290644--41290755	28	4.0	27	83	6	98	28	12	25	33	1.92
41298807--41298904	27	3.5	28	90	2	135	26	13	28	31	1.94
41298835--41298917	27	3.0	27	87	5	96	30	12	25	32	1.92
41298807--41298918	28	4.0	27	83	6	98	28	12	25	33	1.92
41301038--41301076	18	2.2	19	86	9	55	20	0	10	69	1.17
41310607--41310646	21	1.9	21	85	10	55	15	10	27	47	1.77
41321068--41321100	2	16.5	2	100	0	66	0	48	0	51	1.00
41322724--41322748	13	1.9	13	100	0	50	24	0	0	76	0.80
41323208--41323238	10	3.0	10	90	9	53	19	3	0	77	0.90
41323231--41323266	19	1.9	19	94	5	65	5	27	0	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41324066--41324101	15	2.5	15	90	4	56	77	0	16	5	0.94
41334007--41334046	12	3.4	12	89	3	55	75	0	5	20	0.99
41339589--41339633	18	2.5	18	85	7	56	20	31	2	46	1.62
41345524--41345552	14	2.0	15	93	6	51	44	13	6	34	1.71
41346785--41346823	14	2.5	16	88	12	55	35	2	0	61	1.10
41347223--41347293	10	7.8	10	74	13	57	32	0	0	67	0.91
41347225--41347293	27	2.6	27	77	6	79	31	0	0	68	0.90
41347199--41347294	46	2.1	46	82	9	115	33	1	1	64	1.07
41350351--41350380	15	1.9	16	93	6	53	73	3	10	13	1.21
41357101--41357129	12	2.3	13	94	5	51	20	6	6	65	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207