genome.fa.s19.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  106  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31886197--31886373	27	6.6	27	83	2	194	27	15	27	29	1.96
31888150--31888268	43	2.8	43	88	1	186	33	26	15	25	1.95
31890192--31890277	43	2.0	43	88	2	129	46	4	22	26	1.71
31893123--31893192	29	2.4	30	82	2	79	18	24	12	44	1.85
31899696--31899754	29	2.0	29	100	0	118	27	28	3	40	1.72
31900974--31901034	32	1.9	32	96	0	113	29	24	26	19	1.99
31902044--31902292	29	8.4	29	75	12	145	24	24	12	39	1.89
31902045--31902174	60	2.2	61	80	9	151	20	25	13	40	1.89
31902165--31902292	29	4.4	29	88	0	166	27	24	9	39	1.86
31904281--31904403	55	2.2	56	88	2	176	26	12	28	33	1.92
31904281--31904403	28	4.4	28	90	2	176	26	12	28	33	1.92
31904306--31904416	28	4.0	27	90	3	116	28	11	26	33	1.91
31912478--31912600	55	2.2	56	88	2	176	26	12	28	33	1.92
31912478--31912600	28	4.4	28	90	2	176	26	12	28	33	1.92
31912503--31912613	28	4.0	27	90	3	116	28	11	26	33	1.91
31917099--31917314	29	7.4	29	81	4	204	37	14	25	22	1.93
31917071--31917320	58	4.3	58	79	5	281	36	15	25	22	1.93
31917071--31917320	87	2.9	87	87	3	360	36	15	25	22	1.93
31921444--31921570	25	5.1	25	74	7	107	29	23	21	25	1.99
31921526--31921582	25	2.3	25	85	11	73	31	28	19	21	1.97
31922353--31922381	14	2.1	14	100	0	58	27	6	20	44	1.77
31931721--31931815	25	3.8	25	78	2	93	28	24	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31938103--31938236	67	2.0	67	92	2	225	39	7	18	34	1.79
31949894--31949921	14	2.0	14	100	0	56	57	0	7	35	1.26
31975954--31975988	15	2.2	16	90	5	54	37	0	8	54	1.31
31976853--31976886	14	2.3	15	90	5	52	17	26	2	52	1.58
31978603--31978695	17	5.9	17	71	14	83	38	5	5	50	1.48
31978596--31978713	30	3.9	30	71	14	107	37	5	5	50	1.51
31978596--31978648	13	3.8	13	77	18	52	33	7	3	54	1.46
31978644--31978683	16	2.6	15	88	7	62	42	2	5	50	1.37
31978614--31978761	61	2.4	61	87	0	215	41	4	4	49	1.45
31978930--31979006	21	3.7	21	79	10	68	44	20	2	32	1.66
31978988--31979472	9	56.3	9	66	17	167	45	19	3	31	1.67
31978997--31979103	16	6.4	17	75	20	75	46	21	0	30	1.58
31978994--31979103	25	4.4	26	76	15	99	47	20	0	30	1.57
31979185--31979226	20	2.1	20	90	0	66	42	23	2	30	1.67
31979205--31979390	34	5.4	34	74	10	171	42	22	5	29	1.77
31979206--31979372	35	4.8	35	76	9	148	41	22	5	29	1.76
31979206--31979392	69	2.7	69	91	0	302	42	21	5	29	1.77
31979362--31979443	25	3.3	25	83	6	103	46	14	2	36	1.58
31982423--31982634	40	5.3	40	80	2	248	24	20	27	27	1.99
31982427--31982643	80	2.7	79	88	3	310	24	21	27	26	1.99
31988209--31988361	66	2.3	65	88	3	218	38	18	28	13	1.90
31988332--31988402	21	3.4	21	86	0	97	32	15	45	7	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31988728--31988980	43	5.9	42	74	9	181	24	18	26	29	1.98
31988772--31988980	86	2.4	86	79	8	212	23	19	26	30	1.98
31988738--31988980	129	1.9	129	86	5	348	23	18	27	30	1.98
31993837--31993867	16	1.9	16	100	0	62	45	6	16	32	1.72
31999546--31999602	22	2.7	19	77	20	51	64	0	15	19	1.28
32001721--32001762	19	2.4	18	84	11	52	71	0	21	7	1.09
32001879--32001914	17	2.1	17	100	0	72	44	0	16	38	1.48
32006502--32006804	151	2.0	151	89	0	462	27	29	16	26	1.97
32011768--32011796	5	5.8	5	100	0	58	0	17	0	82	0.66
32034376--32034435	31	2.0	31	83	9	79	51	10	3	35	1.52
32037856--32038267	206	2.0	206	99	0	806	27	19	17	35	1.94
32042299--32042342	22	2.0	22	81	0	52	56	11	2	29	1.46
32048173--32048209	19	1.9	19	88	0	56	18	18	0	62	1.34
32048626--32048757	66	2.0	66	88	2	194	23	20	20	35	1.96
32057625--32057721	38	2.5	37	78	11	104	51	4	2	42	1.32
32059537--32059606	27	2.6	27	79	4	79	30	40	15	14	1.87
32060203--32060235	12	2.9	12	86	13	52	9	6	9	75	1.18
32066448--32066479	16	2.0	16	93	0	55	25	15	0	59	1.36
32066697--32066893	51	3.9	51	76	7	204	32	28	15	23	1.95
32066697--32066923	101	2.2	102	81	5	264	31	28	15	24	1.96
32069658--32069726	28	2.5	27	83	6	84	36	4	1	57	1.27
32074766--32074830	31	2.1	30	85	2	85	26	21	3	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32075252--32075285	7	4.9	7	89	10	52	41	0	0	58	0.98
32077744--32077814	16	4.4	16	87	0	97	39	5	23	30	1.78
32078090--32078143	23	2.4	24	81	9	60	44	3	0	51	1.19
32083195--32083228	17	1.9	18	88	5	52	67	0	14	17	1.23
32083454--32083505	22	2.3	22	84	12	70	57	0	9	32	1.31
32085453--32085551	23	4.3	23	93	0	171	23	21	24	31	1.98
32085681--32085752	38	1.9	37	86	8	101	43	1	22	33	1.62
32094562--32094620	30	2.0	30	86	6	84	47	10	10	32	1.71
32095469--32095495	14	1.9	14	100	0	54	14	14	11	59	1.62
32105037--32105135	43	2.3	43	84	3	119	23	18	21	37	1.94
32123544--32123617	36	2.1	36	97	0	139	55	8	6	29	1.55
32123581--32123629	26	2.0	26	88	8	75	57	8	8	26	1.56
32128433--32128459	13	2.1	13	100	0	54	18	0	0	81	0.69
32136474--32136507	10	3.5	10	96	4	61	8	0	8	82	0.85
32137294--32137351	25	2.3	25	100	0	116	15	13	12	58	1.63
32139729--32139823	47	2.0	47	95	4	174	28	7	23	41	1.81
32139735--32139833	47	2.1	47	90	3	155	28	9	24	38	1.86
32140173--32140216	23	1.9	23	90	0	70	22	2	31	43	1.66
32140897--32141097	61	3.2	60	76	14	174	46	4	4	43	1.45
32144719--32144796	26	3.0	25	81	7	93	35	14	8	41	1.77
32145046--32145086	10	4.4	10	79	17	52	17	21	0	60	1.35
32147254--32147463	29	7.2	29	84	2	260	36	14	25	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32152161--32152303	75	1.9	75	82	5	182	34	4	17	42	1.71
32152395--32152488	41	2.3	41	81	3	100	29	15	23	30	1.96
32152613--32152828	63	3.2	67	81	9	251	31	9	15	43	1.79
32152679--32152776	32	3.1	32	69	24	98	31	8	18	41	1.80
32152665--32152758	31	3.0	31	69	25	97	28	10	18	42	1.83
32155112--32155222	39	2.9	38	82	2	132	35	9	13	42	1.76
32158769--32160088	656	2.0	655	95	0	2356	32	12	19	36	1.89
32161480--32161520	14	2.7	15	85	7	57	21	2	2	73	1.07
32166136--32166164	14	2.1	14	100	0	58	37	20	20	20	1.94
32167989--32168029	14	2.7	15	85	7	57	21	2	2	73	1.07
32171392--32171508	39	3.0	39	81	2	119	36	9	11	42	1.73
32174325--32174373	14	3.4	14	81	10	62	51	6	2	40	1.38
32177949--32178016	24	2.8	23	76	8	64	55	4	7	32	1.47
32179445--32179637	44	4.5	44	71	14	134	29	21	18	31	1.96
32179949--32180380	88	4.9	88	90	2	674	23	26	22	26	2.00
32179995--32180224	43	5.3	43	65	6	147	22	27	22	26	1.99
32182135--32182183	9	5.2	9	88	11	64	2	8	4	85	0.79
32182134--32182177	22	2.0	23	86	4	63	2	6	4	86	0.77
32182134--32182194	28	2.2	28	80	13	72	3	9	3	83	0.87
32187014--32187074	23	2.6	23	78	14	63	54	4	6	34	1.48
32188782--32188848	9	7.4	9	73	6	64	40	16	11	31	1.85
32188782--32188853	18	3.9	18	83	1	90	40	16	12	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32188782--32188848	27	2.5	27	82	0	80	40	16	11	31	1.85
32188951--32188994	18	2.4	18	88	0	61	13	2	43	40	1.57
32189550--32189597	24	2.0	24	91	0	78	43	18	2	35	1.62
32193365--32193401	17	2.2	17	90	9	58	18	5	2	72	1.15
32195963--32196153	50	3.8	50	85	1	249	21	28	21	27	1.99
32203687--32203838	50	3.0	50	83	1	180	20	30	22	26	1.98
32214693--32214779	25	3.4	25	80	10	86	33	24	21	20	1.97
32214741--32214807	25	2.7	25	81	4	82	34	19	20	25	1.96
32220770--32221245	47	10.1	47	94	1	801	32	8	29	28	1.87
32221364--32221442	37	2.1	37	88	4	115	25	18	30	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207