genome.fa.s19.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  205  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61717247--61717288	21	2.0	21	95	4	77	42	4	4	47	1.45
61725978--61726047	31	2.3	30	80	11	79	45	18	11	24	1.82
61733410--61733453	23	1.9	23	81	9	54	68	0	2	29	1.02
61736073--61736124	23	2.3	23	100	0	104	48	17	11	23	1.79
61743089--61743119	5	6.4	5	92	7	55	80	0	0	19	0.71
61744693--61744782	46	2.0	46	93	0	153	7	11	37	43	1.69
61745062--61745151	44	2.0	44	80	0	99	27	25	18	27	1.98
61745422--61745751	44	7.6	45	74	10	230	26	21	21	30	1.98
61747476--61747565	46	2.0	46	93	0	153	43	37	11	7	1.69
61748901--61748964	27	2.4	25	78	14	67	35	9	3	51	1.50
61749124--61749154	5	6.4	5	96	3	55	19	0	0	80	0.71
61761236--61761533	46	6.8	45	72	13	205	31	20	21	26	1.98
61761236--61761589	44	8.2	43	72	11	206	31	20	20	26	1.98
61761236--61761589	87	4.1	88	74	11	248	31	20	20	26	1.98
61762205--61762294	46	2.0	46	93	0	153	43	37	11	7	1.69
61763645--61763708	27	2.4	25	78	14	67	35	9	3	51	1.50
61763869--61763899	5	6.4	5	96	3	55	19	0	0	80	0.71
61764971--61765030	27	2.2	28	90	3	95	50	5	5	40	1.46
61767831--61767875	16	2.7	17	86	6	65	42	0	0	57	0.98
61771025--61771075	18	2.8	19	77	14	54	60	27	5	5	1.43
61772570--61773492	383	2.4	379	81	8	1042	30	19	14	34	1.92
61776500--61776562	30	2.1	30	85	2	83	50	4	6	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61780603--61780687	28	2.8	30	74	16	86	48	18	11	21	1.80
61782472--61782507	2	18.0	2	100	0	72	50	0	50	0	1.00
61783326--61784207	351	2.5	358	85	7	1229	38	22	8	30	1.83
61786280--61786316	2	18.5	2	100	0	74	0	48	0	51	1.00
61797287--61797317	16	1.9	16	100	0	62	38	35	0	25	1.56
61798034--61798090	19	3.1	18	75	12	53	52	1	1	43	1.21
61798261--61798736	216	2.2	216	90	0	729	33	16	15	33	1.91
61799078--61799119	3	14.0	3	94	0	75	33	35	0	30	1.58
61810863--61810913	23	2.1	23	82	7	57	58	7	5	27	1.49
61815908--61815950	22	2.0	22	85	0	59	32	20	6	39	1.80
61815954--61816152	15	13.5	15	74	3	161	27	26	23	23	2.00
61815954--61816122	29	5.8	29	82	2	149	27	27	22	21	1.99
61816058--61816107	14	3.5	14	78	5	64	30	32	20	18	1.96
61815953--61816122	58	2.9	58	76	1	169	28	27	22	21	1.99
61819292--61819360	31	2.2	31	84	0	93	44	11	20	23	1.83
61820171--61820196	7	3.7	7	100	0	52	76	0	0	23	0.78
61821286--61821335	18	2.7	18	78	3	55	40	46	2	12	1.52
61821442--61821499	9	6.4	9	91	0	98	24	10	24	41	1.86
61837157--61837211	29	1.9	28	82	10	67	21	10	9	58	1.60
61837723--61837811	44	2.0	44	95	0	160	33	10	15	40	1.81
61838569--61838607	20	1.9	21	94	5	71	69	0	5	25	1.09
61840813--61840888	28	2.7	29	80	10	86	35	27	1	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61842435--61842484	26	1.9	26	95	0	91	32	32	24	12	1.91
61842298--61842667	103	3.6	102	91	3	571	30	30	19	19	1.97
61842538--61842589	26	2.0	26	96	0	95	28	34	23	13	1.92
61842996--61843059	30	2.2	29	81	10	76	29	28	6	35	1.82
61843003--61843059	30	1.9	30	85	3	80	29	24	7	38	1.82
61845368--61845529	46	3.6	46	94	2	276	27	22	15	33	1.95
61849296--61849330	18	2.1	17	89	10	54	34	17	0	48	1.47
61864183--61864225	17	2.5	17	84	0	50	58	9	2	30	1.42
61865082--61865117	18	1.9	19	88	5	56	52	0	0	47	1.00
61874282--61874351	31	2.3	30	82	9	79	45	8	10	35	1.68
61883002--61883070	34	2.0	34	100	0	138	28	8	11	50	1.68
61885286--61885351	31	2.1	31	83	10	82	37	6	15	40	1.72
61887512--61887569	30	1.9	30	89	0	89	46	10	12	31	1.74
61893310--61893341	2	16.0	2	93	0	55	46	0	0	53	1.00
61895441--61895468	12	2.3	12	100	0	56	21	35	42	0	1.53
61895945--61895999	3	18.3	3	84	0	74	30	3	1	63	1.22
61896130--61896209	36	2.2	36	80	8	92	36	8	2	52	1.46
61908743--61909317	218	2.7	218	93	2	955	30	20	21	26	1.98
61908744--61909286	87	6.3	87	73	11	338	30	20	21	26	1.98
61908695--61909286	44	13.6	44	72	11	303	31	20	21	26	1.98
61909294--61909462	83	2.0	84	84	1	223	34	23	20	22	1.97
61909294--61909418	43	3.0	40	74	11	126	33	24	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61910211--61910240	12	2.5	12	94	0	51	16	40	43	0	1.48
61910721--61910778	3	19.3	3	85	0	80	31	3	1	63	1.21
61910909--61910988	36	2.2	36	80	8	92	36	8	2	52	1.46
61917353--61917395	8	5.0	8	81	13	50	67	2	0	30	1.03
61917353--61917394	18	2.4	18	88	11	61	66	2	0	30	1.04
61925541--61925621	41	2.0	41	100	0	162	34	14	14	35	1.88
61931492--61931565	21	3.4	21	71	3	67	24	2	5	67	1.25
61931839--61931872	16	2.2	16	89	5	52	29	0	2	67	1.05
61935086--61935131	22	2.1	22	84	8	58	4	10	2	82	0.89
61946907--61946988	40	2.0	40	95	0	146	37	13	15	32	1.87
61952067--61952189	60	2.0	60	100	0	246	42	19	8	30	1.80
61952567--61953036	131	3.6	131	85	4	637	52	19	7	20	1.70
61952560--61953036	261	1.8	257	87	3	713	53	19	7	20	1.69
61956824--61956858	11	3.1	11	91	4	52	65	2	0	31	1.07
61956824--61956853	11	2.6	12	94	5	53	66	0	0	33	0.92
61960333--61960394	30	2.1	29	85	8	81	41	8	1	48	1.42
61963134--61963184	22	2.3	21	80	6	57	27	49	0	23	1.51
61966379--61966873	269	1.8	270	89	3	789	30	7	16	45	1.75
61972373--61972484	58	1.9	58	98	0	215	31	8	23	36	1.86
61976486--61976519	18	1.9	18	94	5	61	32	0	5	61	1.20
61977973--61978028	25	2.3	25	84	3	69	69	8	1	19	1.24
61979461--61979560	50	2.0	50	96	0	182	29	17	9	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61982785--61982824	21	1.9	21	85	10	55	27	0	7	65	1.20
61983281--61983306	10	2.6	10	100	0	52	88	0	0	11	0.52
61983270--61983346	40	1.9	40	86	5	111	70	0	1	28	0.96
61987066--61987199	59	2.2	61	85	7	177	39	11	17	32	1.85
61987409--61987436	14	2.0	14	100	0	56	7	21	0	71	1.09
61987738--61987792	22	2.6	22	80	13	62	67	1	1	29	1.11
61987738--61987795	13	4.0	15	78	13	59	65	1	1	31	1.13
61987952--61987987	17	2.1	17	89	0	54	41	8	2	47	1.48
61991050--61991075	11	2.4	11	100	0	52	53	0	7	38	1.30
61998219--61998248	2	15.0	2	100	0	60	50	0	0	50	1.00
61998787--61998838	26	2.0	25	88	3	77	67	1	0	30	1.02
61998846--61998885	7	5.7	7	90	0	62	77	0	0	22	0.77
61998845--61998886	13	3.2	13	86	6	57	76	0	0	23	0.79
62020155--62020280	60	2.1	61	80	4	139	31	15	8	44	1.76
62024884--62024914	6	5.2	6	92	0	53	19	48	32	0	1.49
62026398--62026438	17	2.4	17	84	8	57	43	2	2	51	1.28
62031681--62031717	4	9.2	4	100	0	74	48	24	0	27	1.51
62035004--62035041	13	3.0	13	84	3	51	39	0	2	57	1.12
62035441--62035620	92	2.0	92	90	0	288	31	21	12	35	1.90
62037002--62037039	19	2.2	17	86	13	51	26	0	5	68	1.11
62037120--62037162	20	2.2	19	84	12	52	48	2	0	48	1.14
62042219--62042727	117	4.3	117	83	3	542	24	9	28	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62052936--62053001	27	2.5	26	77	5	69	36	1	0	62	1.05
62054163--62054232	29	2.3	30	78	9	81	54	2	1	41	1.24
62054163--62054233	30	2.4	29	77	11	81	53	2	1	42	1.24
62056334--62056360	14	1.9	14	100	0	54	14	0	37	48	1.45
62060636--62060666	16	2.0	15	93	6	53	19	22	12	45	1.84
62075306--62075347	10	4.1	10	82	17	59	47	2	0	50	1.14
62075307--62075347	21	1.9	22	95	5	75	46	2	0	51	1.14
62075305--62075353	21	2.3	22	82	3	73	46	2	0	51	1.12
62075307--62075354	22	2.2	22	88	7	71	43	2	0	54	1.12
62079704--62079765	18	3.6	17	75	12	56	51	0	3	45	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207