genome.fa.s19.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  36  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10392271--10392312	17	2.4	18	80	4	50	14	40	26	19	1.89
10399772--10399917	77	1.9	77	82	2	186	26	13	13	45	1.81
10401875--10401926	21	2.5	21	96	0	95	28	7	28	34	1.85
10416850--10416886	15	2.3	17	81	13	51	72	0	0	27	0.84
10416873--10416917	23	1.9	24	82	13	58	46	2	2	48	1.26
10431188--10431276	8	10.8	8	73	15	56	28	4	4	62	1.34
10431188--10431276	17	5.4	16	74	12	56	28	4	4	62	1.34
10432290--10432319	14	2.1	14	93	0	51	30	0	0	70	0.88
10436342--10436499	45	3.5	45	75	13	171	31	18	13	36	1.90
10443738--10443792	14	3.4	16	70	14	51	0	10	7	81	0.86
10443814--10443854	3	13.7	3	100	0	82	65	0	34	0	0.93
10444208--10444290	4	21.2	4	91	4	98	28	2	25	43	1.67
10450471--10450508	17	2.1	18	85	9	51	47	7	7	36	1.62
10450750--10450789	15	2.6	15	88	4	53	17	0	32	50	1.47
10452218--10452257	18	2.3	17	83	8	53	22	0	0	77	0.77
10454068--10454097	11	2.7	11	94	0	51	60	10	6	23	1.52
10464242--10464295	15	3.5	15	80	5	63	53	5	0	40	1.24
10464401--10464447	21	2.2	22	85	11	62	53	0	2	44	1.12
10464530--10464578	22	2.2	22	85	10	64	48	2	0	48	1.12
10469197--10469313	24	4.8	24	73	5	92	17	28	23	30	1.97
10471227--10471253	14	1.9	14	100	0	54	59	0	14	25	1.36
10472176--10472247	25	2.9	25	80	0	90	12	29	20	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10472211--10472273	25	2.5	25	80	7	74	20	23	19	36	1.95
10477206--10477230	8	3.1	8	100	0	50	24	0	12	64	1.27
10477765--10477820	28	2.0	28	96	0	103	21	8	14	55	1.66
10488383--10488445	30	2.1	30	96	0	117	57	15	3	23	1.53
10488480--10488522	11	3.9	11	75	0	50	53	9	18	18	1.70
10488475--10488517	22	2.0	22	85	0	59	53	11	16	18	1.72
10488474--10488530	22	2.6	22	77	5	53	57	8	17	15	1.63
10489422--10489467	20	2.4	19	83	16	60	39	0	2	58	1.10
10489421--10489471	19	2.7	19	77	19	61	41	0	1	56	1.10
10494443--10494505	32	2.0	32	100	0	126	44	14	28	12	1.82
10496268--10496308	16	2.6	16	84	0	55	53	2	9	34	1.47
10498277--10498538	132	2.0	132	93	0	443	29	24	17	28	1.97
10498158--10498430	88	3.1	88	65	9	223	28	24	18	28	1.98
10498442--10498776	43	7.2	44	65	20	144	29	24	18	27	1.98
10498465--10498705	44	5.2	45	64	20	136	29	23	20	26	1.99
10498157--10498502	176	2.0	174	80	6	394	28	25	17	28	1.98
10498440--10498778	95	3.6	95	94	1	592	29	24	18	27	1.98
10498442--10498838	190	2.1	189	84	5	516	29	23	18	28	1.98
10498798--10499508	50	14.3	49	69	9	289	23	20	24	31	1.98
10498782--10499234	100	4.5	100	87	3	626	24	21	23	31	1.98
10498782--10499234	199	2.3	199	87	2	624	24	21	23	31	1.98
10498998--10499525	249	2.1	248	87	2	754	22	21	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10499248--10499682	199	2.2	200	88	1	631	23	20	24	32	1.98
10499098--10499600	50	10.1	49	67	11	180	22	20	24	32	1.98
10499248--10499682	100	4.4	100	86	1	586	23	20	24	32	1.98
10499707--10500200	88	5.6	88	92	2	800	24	23	24	27	2.00
10499707--10500200	174	2.8	173	92	2	785	24	23	24	27	2.00
10501275--10501376	43	2.4	43	84	12	131	29	23	14	32	1.94
10505758--10505798	16	2.6	16	84	0	55	53	2	9	34	1.47
10509101--10509156	20	2.8	20	75	0	58	17	17	1	62	1.42
10509150--10509195	22	2.2	21	81	14	51	17	10	6	65	1.45
10509205--10509302	20	4.9	19	73	14	81	19	16	6	58	1.59
10509246--10509285	19	2.1	19	86	9	55	15	15	5	65	1.44
10509399--10509442	19	2.3	18	84	7	52	18	11	9	61	1.55
10509399--10509449	20	2.6	20	81	12	61	19	13	9	56	1.65
10509801--10509899	40	2.4	41	81	8	103	19	9	7	64	1.45
10509867--10509911	20	2.2	20	84	0	54	22	11	8	57	1.60
10509981--10510032	14	3.8	13	82	7	59	23	13	3	59	1.50
10510802--10510849	19	2.4	20	75	10	53	64	8	10	16	1.48
10511763--10511801	2	19.5	2	100	0	78	0	48	0	51	1.00
10518411--10518486	28	2.7	27	88	8	107	34	14	13	38	1.85
10522425--10522492	25	2.8	25	93	2	120	16	25	22	36	1.94
10522556--10522710	26	6.2	25	70	15	99	18	24	22	34	1.96
10522706--10522808	48	2.1	49	83	7	129	18	27	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10522607--10522763	73	2.2	72	78	10	174	18	26	20	34	1.96
10522706--10522825	50	2.4	48	83	5	134	17	27	20	35	1.95
10522727--10522812	25	3.5	25	73	4	77	18	30	19	31	1.96
10522727--10522824	25	4.0	25	73	4	74	18	28	19	33	1.95
10529328--10529906	288	2.0	287	92	1	953	36	11	23	28	1.90
10530872--10530961	47	1.9	47	86	4	128	22	30	18	28	1.97
10531291--10531335	18	2.5	18	85	0	63	17	33	22	26	1.96
10534638--10534756	42	2.8	42	85	0	166	36	21	18	23	1.95
10534729--10535055	42	7.8	42	88	2	451	24	21	19	34	1.97
10540911--10541376	9	50.8	9	73	14	339	34	1	17	45	1.59
10541327--10541385	18	3.3	18	90	0	64	32	3	22	42	1.70
10541394--10541466	35	2.1	34	85	9	96	31	1	13	53	1.49
10541427--10541485	12	4.8	12	74	15	57	35	0	11	52	1.38
10541613--10541654	15	2.7	16	82	14	52	54	0	7	38	1.28
10541627--10541656	15	2.0	15	100	0	60	53	0	6	40	1.27
10541859--10541903	23	2.0	23	81	0	54	42	4	6	46	1.50
10545130--10545169	7	5.7	7	84	0	53	50	47	0	2	1.14
10545130--10545195	14	4.7	14	83	5	62	48	40	0	10	1.38
10545128--10545195	7	9.7	7	73	12	50	47	41	0	11	1.40
10545157--10545202	14	3.3	14	77	20	51	47	32	0	19	1.50
10546318--10546454	72	1.9	73	87	4	206	26	22	17	33	1.96
10546390--10546602	114	1.9	113	82	5	268	26	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10546518--10546678	88	1.8	88	82	2	207	28	21	17	32	1.96
10549974--10550038	32	2.0	32	96	0	121	15	24	23	36	1.93
10550010--10550312	129	2.3	129	86	3	378	26	21	21	30	1.98
10550023--10550578	44	12.8	44	70	14	205	27	21	20	30	1.98
10550929--10551259	44	7.7	43	80	12	333	28	24	18	28	1.98
10550924--10551259	88	3.9	87	81	9	375	28	24	18	28	1.98
10551054--10551132	38	2.1	38	88	4	115	25	20	18	35	1.95
10550966--10551219	126	2.0	126	91	1	411	27	23	17	31	1.97
10550950--10551259	170	1.8	170	87	5	466	29	23	18	29	1.97
10551259--10551664	88	4.6	87	85	3	481	20	22	27	29	1.99
10551259--10551664	176	2.3	176	84	2	537	20	22	27	29	1.99
10562773--10562797	5	5.0	5	100	0	50	0	40	0	60	0.97
10573417--10573466	23	2.2	23	92	0	82	24	18	26	32	1.97
10573771--10573827	15	3.5	15	73	17	60	50	1	0	47	1.11
10591432--10591466	18	1.9	18	88	0	52	57	2	11	28	1.48
10593353--10593424	25	2.9	25	89	0	108	50	16	4	29	1.64
10606711--10606744	2	17.0	2	100	0	68	50	0	50	0	1.00
10609813--10609849	6	6.2	6	90	0	56	51	13	32	2	1.55
10612949--10612980	15	2.1	15	100	0	64	18	18	18	43	1.88
10616491--10616524	11	3.0	11	87	8	50	32	0	2	64	1.08
10618588--10618624	17	2.2	17	95	0	65	54	16	0	29	1.43
10623921--10623952	16	2.0	16	100	0	64	37	12	12	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624820--10624858	19	2.0	20	85	9	55	43	0	2	53	1.14
10633320--10633507	42	4.4	42	83	7	209	25	14	24	35	1.94
10633372--10633512	42	3.4	42	89	0	228	24	14	24	36	1.93
10633372--10633528	84	1.9	84	84	0	215	24	14	26	35	1.93
10634045--10634120	40	1.9	40	97	0	143	38	5	18	38	1.73
10638703--10638768	29	2.3	29	76	5	71	36	10	22	30	1.88
10639106--10639298	50	3.8	50	86	0	251	24	20	31	23	1.98
10639993--10640029	17	2.2	17	86	13	51	54	0	13	32	1.40
10642561--10642600	20	2.0	20	100	0	80	55	5	20	20	1.62
10660847--10660991	42	3.5	42	81	7	154	16	22	17	44	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207