genome.fa.s19.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  180  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55202356--55202413	9	6.6	9	75	15	50	51	1	0	46	1.11
55202347--55202411	34	1.9	33	84	12	87	53	1	0	44	1.09
55202335--55202419	36	2.4	36	79	15	97	50	3	0	45	1.18
55202771--55202836	26	2.5	27	82	7	73	54	3	0	42	1.15
55203215--55203262	17	2.9	16	77	14	53	14	12	0	72	1.11
55203212--55203255	18	2.4	18	85	7	54	15	9	0	75	1.05
55203824--55203886	31	2.0	31	90	0	99	34	9	11	44	1.73
55206835--55206870	5	7.0	5	93	6	63	77	2	0	19	0.88
55206835--55206870	16	2.3	15	95	4	63	77	2	0	19	0.88
55209134--55209627	46	11.6	44	88	7	553	35	14	22	27	1.93
55209168--55209355	74	2.5	74	90	0	313	38	14	20	26	1.91
55211832--55211871	15	2.5	17	88	8	57	70	5	2	22	1.19
55214460--55215078	44	14.1	44	65	14	193	28	21	26	23	1.99
55214386--55215172	132	6.0	132	96	0	1430	28	21	25	23	1.99
55215241--55215669	44	9.8	42	75	13	336	28	20	24	27	1.99
55215241--55215679	89	5.0	87	72	15	343	28	20	24	26	1.99
55215246--55215536	133	2.2	133	96	0	537	28	20	25	25	1.99
55215246--55215574	133	2.5	131	92	4	516	28	20	24	26	1.99
55215845--55215957	19	5.8	19	82	4	145	39	9	15	35	1.80
55215846--55215951	40	2.7	40	91	2	162	39	10	14	35	1.80
55216468--55216511	18	2.5	17	77	3	52	9	9	4	77	1.12
55216718--55216766	24	2.0	25	88	8	73	32	8	4	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55217440--55217632	98	2.0	98	91	0	314	27	10	24	36	1.89
55220909--55220974	29	2.4	27	80	19	82	42	9	0	48	1.35
55221028--55221079	27	1.9	27	92	0	86	34	21	28	15	1.94
55221389--55221448	19	3.2	19	76	4	77	38	11	0	50	1.39
55221680--55221738	19	3.2	19	82	4	84	49	0	13	37	1.43
55222314--55222399	27	3.2	27	88	0	118	16	29	25	29	1.97
55222454--55222516	26	2.4	27	97	2	119	47	0	11	41	1.39
55223142--55223184	20	2.2	19	83	4	50	23	4	2	69	1.18
55223214--55223252	20	1.9	21	89	5	62	38	7	2	51	1.44
55223008--55223271	136	1.9	138	86	5	374	29	6	2	62	1.33
55246776--55246817	19	2.2	19	87	8	59	4	11	7	76	1.15
55246846--55246919	6	11.5	6	72	18	51	16	4	5	74	1.16
55246890--55246943	22	2.5	21	80	14	56	11	3	9	75	1.15
55247544--55247600	30	1.9	29	96	3	105	36	8	0	54	1.32
55251787--55251990	88	2.3	88	87	0	291	20	21	27	30	1.98
55253312--55253344	14	2.3	15	89	5	50	27	33	12	27	1.92
55254170--55254224	26	2.2	26	83	3	67	60	5	12	21	1.53
55256844--55256956	43	2.6	44	74	12	108	27	20	24	27	1.99
55257745--55258563	23	35.3	23	72	9	275	27	13	17	41	1.87
55257755--55258563	70	11.6	70	87	2	1040	27	12	17	41	1.87
55257745--55258563	208	3.9	209	90	3	1193	27	13	17	41	1.87
55265027--55265135	44	2.5	43	79	10	123	24	21	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55265983--55266035	23	2.3	23	86	0	70	24	16	16	41	1.89
55266938--55267117	83	2.3	81	81	6	208	46	12	13	27	1.78
55266938--55267295	82	4.3	82	74	10	268	46	11	12	29	1.76
55267432--55267473	22	2.0	21	85	4	57	64	0	2	33	1.07
55267433--55267498	28	2.4	28	82	12	82	57	0	3	39	1.14
55272659--55272705	16	2.9	16	87	0	67	36	2	34	27	1.69
55272694--55272782	44	2.0	46	88	4	137	29	4	29	37	1.77
55272694--55272799	39	2.5	44	80	11	114	31	3	29	35	1.75
55272946--55273080	18	8.0	17	70	19	86	53	2	2	42	1.25
55276788--55277010	84	2.7	82	81	7	279	47	13	13	26	1.80
55282606--55282653	25	1.9	25	91	0	78	58	2	8	31	1.39
55289315--55289495	44	4.2	44	68	11	124	25	21	22	30	1.99
55289600--55289715	46	2.5	46	79	4	128	26	25	18	29	1.98
55289772--55290193	100	4.2	100	83	1	488	26	23	19	30	1.98
55289790--55290186	201	2.0	199	84	1	515	26	24	19	29	1.98
55290016--55290179	50	3.3	50	67	0	139	24	26	19	29	1.98
55289847--55290197	50	7.0	50	63	3	130	26	24	19	29	1.98
55290257--55290360	50	2.1	50	83	3	129	24	25	25	25	2.00
55290381--55290641	88	3.0	88	88	0	360	26	25	20	27	1.99
55290477--55290614	45	3.1	45	68	4	127	27	26	18	26	1.98
55296940--55296973	12	2.8	12	90	0	50	50	11	2	35	1.54
55303961--55303994	17	2.1	17	88	5	52	50	0	17	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55304872--55304968	42	2.3	42	92	0	158	37	7	25	29	1.83
55313935--55314012	26	2.9	27	75	11	79	17	19	17	44	1.87
55316385--55316580	45	4.4	45	83	3	198	26	18	14	40	1.90
55316508--55316654	74	2.0	74	81	5	172	27	20	12	39	1.89
55317287--55317321	16	2.2	16	90	10	54	28	17	2	51	1.59
55322082--55322124	21	2.0	21	90	0	68	41	2	13	41	1.57
55327906--55327959	27	2.0	27	92	0	90	40	18	7	33	1.78
55330608--55330726	34	3.4	35	88	8	179	40	32	12	14	1.83
55340343--55340406	33	1.9	33	84	6	85	40	21	21	15	1.91
55353432--55353483	24	2.2	24	89	0	77	50	9	3	36	1.54
55355922--55356948	512	2.0	512	94	0	1784	31	24	13	30	1.94
55358339--55358395	24	2.4	24	85	5	71	47	10	5	36	1.61
55358351--55358402	24	2.2	24	85	0	68	50	7	3	38	1.50
55360292--55360431	64	2.2	65	84	7	189	24	29	22	24	1.99
55362780--55362914	40	3.4	38	73	7	119	26	18	24	30	1.98
55364936--55364985	22	2.4	21	80	9	57	72	4	20	4	1.18
55370867--55370909	21	2.0	21	86	0	59	30	25	0	44	1.55
55370916--55370972	21	2.7	20	81	10	69	33	10	1	54	1.45
55379479--55379645	43	3.9	43	93	0	271	33	26	14	25	1.95
55384702--55384804	44	2.3	45	84	3	127	30	21	13	34	1.92
55384724--55384809	46	1.9	44	90	4	136	29	24	13	32	1.94
55389509--55389632	43	2.9	43	91	0	194	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55389511--55389665	43	3.6	43	86	4	179	29	25	17	27	1.97
55393729--55393842	44	2.7	43	84	6	144	32	25	19	22	1.97
55393734--55393883	41	3.6	41	81	6	126	31	26	17	25	1.97
55397159--55397200	22	1.9	22	85	0	57	42	16	7	33	1.75
55399352--55399392	21	2.0	21	90	0	64	60	9	0	29	1.28
55399353--55399419	21	3.2	21	81	8	57	67	5	0	26	1.14
55401432--55401460	6	4.8	6	100	0	58	17	51	0	31	1.45
55405936--55405984	23	2.1	23	81	7	55	14	6	10	69	1.35
55409680--55409928	23	10.7	22	71	13	178	40	17	14	28	1.88
55409684--55409952	93	2.9	93	93	0	439	40	17	14	28	1.88
55409673--55409940	47	5.7	47	79	1	315	41	17	13	28	1.86
55410713--55410765	16	3.2	16	94	5	97	26	0	35	37	1.57
55410746--55410836	45	2.0	45	85	2	121	27	6	28	37	1.82
55410756--55410859	44	2.5	42	80	12	115	32	6	26	33	1.83
55410981--55411035	15	3.4	16	80	16	53	54	1	0	43	1.10
55410987--55411035	16	2.9	18	80	20	61	55	0	0	44	0.99
55411083--55411295	67	3.1	67	65	16	168	46	3	2	47	1.35
55410888--55411215	156	2.1	156	97	0	611	43	3	6	46	1.45
55411157--55411191	18	2.0	17	88	5	52	54	0	0	45	0.99
55410893--55411329	156	3.1	137	66	20	289	44	3	5	47	1.41
55411074--55411339	137	1.9	138	90	0	426	44	3	3	47	1.38
55411095--55411373	137	2.0	135	82	6	339	45	5	3	45	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55414812--55414846	9	4.0	9	88	7	54	62	0	0	37	0.95
55418591--55418692	28	3.6	28	91	0	159	32	25	10	31	1.90
55423269--55423341	33	2.2	33	90	0	110	31	12	16	39	1.85
55429156--55429180	5	5.0	5	100	0	50	20	80	0	0	0.72
55432461--55432563	49	2.1	50	88	1	154	29	7	5	57	1.50
55441292--55441340	25	2.0	25	83	0	62	22	26	16	34	1.95
55459271--55459312	18	2.3	18	91	0	66	21	28	7	42	1.79
55460096--55460229	34	3.9	33	84	6	169	39	0	13	46	1.49
55460283--55460563	126	2.2	126	86	1	384	37	16	16	30	1.90
55460455--55460650	98	2.0	98	87	0	284	37	19	14	28	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207