genome.fa.s19.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  110  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33129309--33129407	42	2.4	42	87	0	135	20	18	38	23	1.93
33133263--33133345	6	13.0	6	72	16	60	73	0	20	6	1.04
33133293--33133342	19	2.7	17	80	17	55	74	0	20	6	1.03
33133262--33133328	25	2.6	27	82	17	81	73	0	20	5	1.04
33133317--33133370	13	4.5	13	75	17	55	72	0	20	7	1.08
33133264--33133354	44	2.0	45	85	10	125	73	0	19	6	1.05
33133263--33133360	47	2.1	45	80	10	119	74	0	19	6	1.02
33136221--33136415	50	3.9	50	81	0	203	21	28	23	27	1.99
33139125--33139163	10	3.9	10	82	0	51	17	23	17	41	1.91
33157012--33157041	16	1.9	16	93	6	53	50	20	0	30	1.49
33166990--33167014	12	2.1	12	100	0	50	72	8	0	20	1.10
33183157--33183293	40	3.4	40	83	4	161	39	21	19	18	1.93
33183327--33183603	41	6.8	41	80	2	279	22	20	25	31	1.98
33183328--33183603	122	2.3	122	84	3	340	22	20	25	31	1.98
33183356--33183597	81	3.0	79	80	6	261	23	19	25	32	1.98
33184226--33184288	26	2.3	28	89	8	103	20	3	41	34	1.68
33184229--33184271	13	3.3	13	73	0	50	20	4	39	34	1.74
33184273--33184343	8	9.4	8	71	11	60	18	0	42	39	1.50
33184317--33184345	15	1.9	15	100	0	58	13	0	48	37	1.43
33184668--33184932	50	5.3	50	96	0	485	53	0	4	41	1.22
33184698--33184798	15	7.6	14	66	30	53	54	0	5	39	1.25
33189153--33189402	43	6.1	43	74	15	208	27	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33189296--33189360	33	2.0	33	93	6	114	29	20	33	16	1.95
33189253--33189402	76	2.0	76	89	2	230	28	18	30	24	1.97
33191265--33191306	20	2.0	21	82	13	52	45	2	0	52	1.13
33191340--33191430	32	2.9	31	76	13	89	46	3	0	50	1.17
33191534--33191562	13	2.3	13	94	5	51	48	0	0	51	1.00
33191501--33191559	23	2.6	21	77	15	64	57	1	0	40	1.09
33191537--33191594	31	1.9	29	86	6	80	44	0	0	55	0.99
33192431--33192480	24	2.0	25	85	11	68	40	2	4	54	1.31
33192778--33192920	67	2.1	67	92	1	234	46	11	2	39	1.52
33193043--33193080	19	2.1	18	95	5	67	60	0	0	39	0.97
33193170--33193227	27	2.0	27	87	9	80	37	0	0	62	0.96
33196353--33196401	19	2.8	17	79	14	55	42	0	30	26	1.55
33202409--33202474	32	2.1	32	83	11	82	46	10	0	42	1.38
33205854--33205901	20	2.5	20	89	3	71	20	27	16	35	1.94
33207288--33207324	12	3.0	12	96	4	65	64	0	8	27	1.21
33214060--33214107	20	2.5	20	89	3	71	20	27	16	35	1.94
33217839--33217870	12	2.6	12	95	5	55	65	3	6	25	1.31
33219229--33219281	23	2.4	22	76	20	56	9	18	1	69	1.25
33221642--33221673	12	2.6	12	95	5	55	65	3	6	25	1.31
33230424--33230607	40	4.6	40	82	6	196	23	20	27	28	1.99
33230424--33230604	80	2.3	81	83	9	221	23	20	27	27	1.99
33230505--33230654	40	3.8	38	80	10	131	25	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33234185--33234304	28	4.3	27	81	2	123	28	24	25	22	1.99
33234185--33234304	56	2.1	56	86	3	170	28	24	25	22	1.99
33234616--33234675	27	2.2	27	85	5	77	20	15	25	40	1.90
33234626--33234688	27	2.3	27	91	0	99	20	17	17	44	1.87
33234624--33234755	67	2.0	67	85	8	180	19	17	16	46	1.85
33234697--33234915	81	2.7	80	85	5	264	18	17	18	45	1.86
33234697--33234907	27	7.8	27	82	7	223	18	18	18	44	1.87
33243197--33243255	27	2.2	27	100	0	118	18	35	28	16	1.93
33252588--33252762	94	1.9	94	97	0	332	48	4	9	38	1.56
33274808--33274851	13	3.7	11	85	14	61	18	9	0	72	1.10
33274819--33274876	27	2.1	27	80	0	62	22	15	1	60	1.44
33277463--33277530	25	2.8	25	95	4	122	14	20	11	52	1.73
33277676--33277737	28	2.2	29	83	11	76	11	12	6	69	1.36
33278392--33278434	16	2.5	16	85	11	50	72	9	2	16	1.21
33284143--33284200	10	5.7	10	76	11	64	29	27	13	29	1.94
33284143--33284203	20	3.0	20	83	9	79	27	26	13	32	1.93
33289195--33289311	54	2.5	43	72	26	119	41	10	13	35	1.79
33289211--33289319	54	2.0	54	98	0	209	39	10	12	37	1.77
33289583--33289623	13	3.1	13	85	3	55	68	0	12	19	1.21
33289660--33289686	10	2.7	10	100	0	54	77	7	0	14	0.97
33297240--33297264	13	1.9	13	100	0	50	16	4	16	64	1.44
33299266--33299374	54	2.0	54	98	0	209	40	11	11	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33303328--33303368	21	2.0	21	85	0	55	43	31	2	21	1.66
33305763--33305879	54	2.5	43	70	26	110	40	10	14	35	1.80
33305779--33305887	54	2.0	54	96	0	200	38	10	13	37	1.79
33306151--33306192	14	3.0	14	82	6	50	69	0	11	19	1.19
33316089--33316150	17	3.6	18	78	12	76	58	3	22	16	1.52
33316089--33316163	33	2.2	33	90	6	116	56	4	25	14	1.56
33317702--33317807	47	2.3	47	79	0	122	28	8	14	49	1.72
33318695--33318741	20	2.3	20	85	0	67	29	36	12	21	1.91
33323170--33323216	20	2.3	20	85	0	67	29	36	12	21	1.91
33326215--33326274	31	2.0	31	87	9	88	28	33	13	25	1.93
33326554--33326612	30	2.0	30	83	6	75	28	15	25	30	1.96
33328292--33328329	20	1.9	19	89	5	58	28	15	31	23	1.96
33331284--33331336	23	2.4	22	76	20	56	9	18	1	69	1.25
33336712--33336933	111	2.0	111	94	0	390	22	19	22	35	1.96
33339433--33339496	21	3.0	21	86	4	83	34	34	3	28	1.73
33346163--33346226	21	3.0	21	86	4	83	34	34	3	28	1.73
33351387--33351464	20	4.0	20	75	6	79	26	19	28	25	1.99
33351387--33351463	40	1.9	39	84	7	102	25	19	28	25	1.99
33354024--33354271	122	2.0	122	99	0	487	43	17	14	24	1.87
33354308--33354432	55	2.3	54	89	6	189	28	24	14	32	1.94
33354471--33354504	10	3.4	10	92	8	52	55	20	0	23	1.43
33367561--33367612	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33370736--33370829	46	2.0	46	93	0	161	24	21	22	31	1.98
33371173--33371233	24	2.7	23	80	7	63	34	16	14	34	1.89
33371500--33371600	38	2.7	38	96	0	184	41	11	10	35	1.77
33374887--33374920	18	1.9	18	88	5	52	55	0	20	23	1.43
33379286--33379339	24	2.2	25	78	15	60	11	22	3	62	1.43
33381590--33381618	14	2.1	14	100	0	58	13	6	6	72	1.26
33381595--33381635	18	2.3	18	91	0	64	7	4	4	82	0.93
33388702--33388797	33	3.2	33	68	27	102	43	14	8	33	1.75
33388875--33388900	9	2.9	9	100	0	52	69	11	0	19	1.18
33395402--33395462	25	2.4	25	81	10	72	39	3	0	57	1.15
33396037--33396154	58	2.0	58	100	0	236	29	22	16	31	1.96
33405142--33405213	35	2.1	35	100	0	144	27	13	19	38	1.90
33406276--33406313	10	3.8	10	83	13	51	28	28	15	26	1.96
33407841--33407867	12	2.2	12	100	0	54	77	7	0	14	0.97
33408970--33409016	15	3.1	15	84	9	60	70	0	17	12	1.17
33409028--33409112	36	2.2	36	85	8	107	65	1	24	8	1.27
33409047--33409087	21	1.9	22	95	5	75	73	0	19	7	1.07
33411009--33411046	10	3.8	10	83	13	51	28	28	15	26	1.96
33413925--33413963	20	2.0	20	94	0	69	15	23	2	58	1.49
33416714--33416751	12	3.1	12	88	7	58	76	5	2	15	1.08
33416714--33416751	13	3.0	13	92	3	60	76	5	2	15	1.08
33417822--33417857	11	3.2	11	88	7	54	77	5	16	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33417822--33417857	12	3.1	12	92	4	56	77	5	16	0	0.94
33417914--33417948	18	1.9	18	88	11	54	57	0	20	22	1.41
33423749--33423786	17	2.2	18	85	4	51	63	2	23	10	1.39
33423768--33423822	12	4.6	12	73	15	51	63	0	23	12	1.29
33434878--33434910	15	2.3	15	89	5	50	78	3	15	3	0.99
33434881--33434941	18	3.1	20	76	19	58	70	3	21	4	1.21
33434883--33434941	20	2.9	21	74	20	63	71	3	20	5	1.20
33442687--33442725	20	2.0	20	90	10	62	15	23	5	56	1.59
33444181--33444266	42	2.0	43	86	2	120	25	17	23	33	1.96
33447683--33447747	22	2.9	22	83	2	76	35	32	3	29	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207