genome.fa.s19.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  70  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20207680--20207956	134	2.1	134	95	0	500	28	20	18	32	1.96
20207958--20208317	186	1.9	186	93	1	614	27	21	18	32	1.97
20209696--20209741	19	2.4	19	88	3	65	13	15	0	71	1.14
20209705--20209741	7	5.4	7	84	15	51	10	13	0	75	1.04
20209705--20209744	19	2.1	19	95	0	71	10	12	0	77	0.99
20214922--20214968	24	2.0	24	86	0	67	53	0	31	14	1.42
20217219--20217263	22	2.0	22	83	8	56	40	4	0	55	1.20
20218719--20218766	3	16.7	3	95	4	82	68	0	31	0	0.90
20225320--20225367	21	2.2	22	77	3	53	58	6	14	20	1.58
20229779--20229818	14	2.9	14	84	0	53	32	7	17	42	1.77
20229787--20229853	34	1.9	35	84	3	91	32	10	13	43	1.78
20229802--20229840	20	2.0	20	84	0	51	28	12	12	46	1.79
20231197--20231266	27	2.6	27	80	8	79	51	20	2	25	1.61
20234995--20235067	24	3.0	24	83	0	101	38	4	42	15	1.66
20242769--20242844	23	3.3	23	96	0	143	31	26	21	21	1.98
20242931--20242959	8	3.6	8	100	0	58	34	27	13	24	1.93
20243064--20243102	18	2.2	17	86	13	53	46	20	0	33	1.51
20250058--20250125	22	3.0	22	97	2	127	33	26	22	17	1.96
20250216--20250244	8	3.6	8	100	0	58	34	27	13	24	1.93
20252078--20252156	31	2.5	31	87	0	113	45	12	13	27	1.80
20261722--20261776	23	2.4	23	84	0	65	41	21	23	12	1.88
20262040--20262122	39	2.1	40	88	6	125	33	4	8	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20265628--20265657	6	5.0	6	100	0	60	33	16	0	50	1.46
20278426--20278455	6	5.2	6	92	8	53	83	0	0	16	0.65
20278426--20278455	11	2.6	11	94	5	51	83	0	0	16	0.65
20280091--20280157	3	22.7	3	72	14	50	35	2	2	58	1.29
20280589--20280641	14	3.7	14	77	5	52	69	5	7	16	1.31
20280924--20280949	3	8.7	3	100	0	52	34	0	0	65	0.93
20285752--20285805	26	2.1	26	86	6	74	44	9	18	27	1.80
20287814--20287870	27	2.1	27	87	6	80	36	14	15	33	1.88
20295754--20295803	17	2.7	20	78	18	70	10	0	44	46	1.37
20300392--20300441	17	2.7	20	78	18	70	10	0	44	46	1.37
20306815--20306863	18	2.6	19	78	18	57	73	2	2	22	1.04
20313330--20313356	4	6.8	4	100	0	54	77	0	0	22	0.76
20316391--20316466	37	2.1	36	85	11	102	39	1	3	55	1.27
20317994--20318063	29	2.5	28	80	8	90	35	7	15	41	1.75
20319474--20319520	21	2.2	21	100	0	94	12	0	42	44	1.42
20319815--20320358	126	4.3	125	90	3	776	33	16	20	29	1.95
20323437--20323535	28	3.2	32	72	13	107	53	5	10	31	1.56
20323421--20323556	61	2.5	50	69	23	121	52	6	8	33	1.57
20323417--20323537	61	2.0	61	86	0	170	54	4	9	31	1.53
20323438--20323537	33	3.2	33	69	13	102	54	5	10	31	1.55
20324090--20324132	18	2.4	18	88	7	61	46	11	25	16	1.80
20324773--20324804	7	4.6	7	100	0	64	56	15	0	28	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20326291--20326531	43	5.7	43	79	8	246	20	16	26	36	1.94
20326290--20326481	42	4.6	40	80	8	213	20	14	26	38	1.91
20326290--20326486	84	2.4	84	93	0	342	20	15	26	37	1.92
20328987--20329043	29	2.0	29	92	0	96	54	5	0	40	1.23
20329040--20329084	11	4.2	10	81	13	54	46	0	26	26	1.53
20330785--20330816	15	2.1	15	94	0	55	65	15	0	18	1.27
20330824--20330860	13	2.7	14	84	16	51	67	8	2	21	1.29
20331334--20331391	23	2.6	22	76	7	64	53	8	6	31	1.58
20332825--20332875	27	1.9	26	84	11	68	41	5	5	47	1.52
20337205--20337406	108	1.9	108	81	4	246	22	20	23	32	1.98
20338932--20338981	17	2.7	20	78	18	70	10	0	44	46	1.37
20343569--20343618	17	2.7	20	78	18	70	10	0	44	46	1.37
20351317--20351518	100	2.0	100	97	0	377	40	10	7	41	1.68
20352790--20352863	16	4.8	16	75	3	62	32	2	8	56	1.43
20353184--20353226	16	2.7	16	77	0	50	58	23	2	16	1.50
20353382--20353411	9	3.2	9	90	9	51	90	0	0	10	0.47
20353382--20353411	10	3.1	10	95	4	53	90	0	0	10	0.47
20360475--20360503	11	2.6	11	100	0	58	24	6	6	62	1.45
20370487--20370549	31	2.0	32	93	3	110	33	9	14	42	1.78
20371057--20371107	11	4.7	11	76	11	52	62	15	9	11	1.53
20371067--20371105	20	2.0	20	89	0	60	58	17	12	10	1.61
20376619--20376681	31	2.0	31	93	6	110	31	6	14	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20379667--20379727	24	2.5	24	81	5	70	45	18	11	24	1.82
20382983--20383099	40	2.8	42	81	10	150	22	15	25	36	1.93
20382992--20383143	44	3.6	42	78	9	159	20	16	27	35	1.94
20390386--20390487	28	3.5	28	77	12	107	37	3	10	48	1.57
20399848--20399906	22	2.7	22	75	17	61	37	0	25	37	1.56
20404381--20404517	35	3.9	35	83	0	157	31	22	18	27	1.97
20404370--20404523	70	2.2	70	88	0	218	29	21	21	27	1.98
20411585--20411614	12	2.4	13	94	5	53	16	0	16	66	1.25
20414085--20414114	4	7.5	4	92	0	51	80	0	20	0	0.72
20414085--20414116	16	2.0	16	100	0	64	81	0	18	0	0.70
20415696--20415740	19	2.4	19	88	7	65	26	15	15	42	1.87
20416550--20416597	16	2.9	17	81	15	64	22	27	0	50	1.50
20422919--20422955	16	2.3	16	95	0	65	40	5	32	21	1.76
20422935--20423031	45	2.1	45	85	9	126	35	4	22	38	1.74
20423205--20423260	23	2.4	23	79	8	69	53	5	0	41	1.24
20423249--20423597	119	2.9	111	93	5	439	52	4	1	41	1.32
20423293--20423328	18	2.0	18	100	0	72	66	0	0	33	0.92
20423188--20423628	120	3.7	120	93	2	715	52	5	1	40	1.32
20423413--20423447	17	2.1	17	100	0	70	65	0	0	34	0.93
20423188--20423628	239	1.8	242	91	3	739	52	5	1	40	1.32
20425937--20425966	13	2.3	13	94	0	51	66	16	10	6	1.41
20430149--20430208	30	2.0	31	83	3	77	20	38	0	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20430302--20430341	20	1.9	21	85	10	55	17	27	2	52	1.57
20430316--20430422	54	2.0	54	100	0	214	26	28	0	45	1.54
20437088--20437132	23	1.9	24	86	4	65	60	0	6	33	1.23
20440270--20440315	22	2.1	22	84	8	58	69	4	0	26	1.07
20441639--20442121	143	3.4	143	86	2	666	28	22	19	29	1.98
20449811--20449856	22	2.1	22	84	8	58	69	4	0	26	1.07
20451313--20451363	20	2.6	19	81	6	57	39	1	0	58	1.09
20451909--20452186	4	69.2	4	86	3	281	26	6	24	42	1.78
20454031--20454244	25	8.6	25	76	8	125	28	11	23	36	1.90
20455718--20455795	32	2.4	32	80	4	95	47	8	15	28	1.75
20487422--20487462	20	2.0	20	86	9	57	31	14	21	31	1.94
20490306--20490353	6	8.2	6	97	2	89	68	0	16	14	1.21
20500328--20500359	13	2.5	13	94	0	55	31	0	12	56	1.37
20500454--20500695	50	4.7	50	86	4	297	26	24	29	19	1.99
20500454--20500703	100	2.4	103	88	6	364	26	24	29	20	1.99
20502547--20502571	12	2.1	12	100	0	50	48	0	12	40	1.40
20502996--20503023	13	2.2	13	100	0	56	21	7	25	46	1.76
20505915--20506156	50	4.7	50	85	4	288	26	24	28	19	1.99
20505915--20506164	100	2.4	103	87	6	355	26	24	28	20	1.99
20518074--20518101	12	2.3	12	100	0	56	35	0	7	57	1.26
20528179--20528234	17	3.3	17	78	14	62	46	1	1	50	1.22
20528307--20528339	7	4.6	7	96	3	57	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20528301--20528339	14	2.7	15	88	11	64	41	0	0	58	0.98
20528412--20528463	19	2.9	18	80	5	52	50	3	3	42	1.39
20539307--20539342	17	2.1	17	100	0	72	52	0	22	25	1.47
20541468--20541499	16	2.0	16	93	0	55	37	15	21	25	1.93
20544876--20544929	27	2.0	27	96	0	99	22	27	18	31	1.97
20548592--20548625	16	2.1	16	88	0	50	50	0	5	44	1.26
20552255--20552315	13	4.7	13	85	0	86	42	24	8	24	1.82
20557224--20557269	24	1.9	24	82	8	58	15	23	2	58	1.48
20560239--20560277	20	2.0	19	85	5	51	41	5	7	46	1.55
20563327--20563375	25	2.0	25	84	11	66	12	2	8	77	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207