genome.fa.s19.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  112  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33707343--33707406	27	2.3	29	84	10	80	12	12	3	71	1.25
33707452--33707506	12	4.7	12	84	8	69	12	3	5	78	1.06
33713005--33713065	13	4.8	13	86	9	74	70	6	6	16	1.30
33714118--33714146	12	2.4	12	100	0	58	68	0	17	13	1.20
33716368--33716428	10	6.1	10	74	12	54	32	13	24	29	1.93
33716369--33716429	20	3.0	20	83	9	79	32	13	26	27	1.93
33721432--33721466	12	3.0	12	91	4	54	68	14	5	11	1.37
33721508--33721557	13	3.9	13	87	12	77	62	0	14	24	1.32
33721508--33721557	26	1.9	27	92	8	86	62	0	14	24	1.32
33733016--33733058	16	2.5	17	85	11	52	13	2	11	72	1.22
33737579--33737636	10	5.7	10	76	11	64	29	27	13	29	1.94
33737579--33737639	20	3.0	20	83	9	79	27	26	13	32	1.93
33739919--33739953	18	1.9	18	88	11	54	57	0	20	22	1.41
33742021--33742078	10	5.7	10	76	11	64	29	27	13	29	1.94
33742021--33742081	20	3.0	20	83	9	79	27	26	13	32	1.93
33743802--33743886	20	4.2	20	82	5	82	37	17	22	22	1.94
33743802--33743886	10	8.5	10	69	10	57	37	17	22	22	1.94
33743793--33743856	30	2.1	30	85	0	83	39	20	21	18	1.93
33745969--33746010	14	2.9	14	85	3	57	73	2	21	2	1.06
33753530--33753576	20	2.3	20	81	0	58	29	34	12	23	1.92
33756172--33756224	23	2.4	22	76	20	56	9	18	1	69	1.25
33758009--33758105	30	3.2	30	72	8	99	28	16	26	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33760258--33760288	12	2.6	12	100	0	62	25	16	12	45	1.83
33760349--33760398	6	8.2	6	81	16	50	2	20	2	76	0.99
33760338--33760408	37	1.9	37	86	11	101	2	18	2	76	1.04
33760334--33760394	16	3.8	16	77	14	63	3	19	1	75	1.03
33761282--33761358	28	2.7	27	84	4	82	9	9	3	77	1.09
33761310--33761345	17	2.1	17	90	10	56	5	8	2	83	0.89
33761338--33761366	14	2.0	15	93	6	51	13	3	6	75	1.13
33763067--33763163	30	3.2	30	70	8	90	27	16	27	27	1.97
33765712--33765741	11	2.7	11	100	0	60	86	0	13	0	0.57
33765711--33765756	25	1.9	23	86	8	65	80	2	15	2	0.91
33772575--33772606	10	3.0	11	90	9	57	71	9	0	18	1.12
33772648--33772704	16	3.5	16	80	4	69	64	5	10	19	1.43
33772648--33772704	17	3.5	17	80	4	73	64	5	10	19	1.43
33774503--33774568	33	2.0	34	85	8	91	27	21	16	34	1.95
33774507--33774579	33	2.2	33	80	7	85	28	19	15	36	1.92
33777659--33777705	20	2.3	20	85	0	67	29	36	12	21	1.91
33779232--33779269	11	3.4	11	92	7	67	15	0	7	76	1.01
33779232--33779270	12	3.3	12	96	3	71	15	0	7	76	0.99
33782342--33782394	19	2.5	20	82	17	63	67	1	20	9	1.28
33785987--33786033	20	2.3	20	85	0	67	21	12	36	29	1.91
33789156--33789180	12	2.1	12	100	0	50	44	16	8	32	1.76
33797737--33797805	10	6.9	10	77	12	70	31	14	27	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33797729--33797805	20	3.9	19	78	8	91	32	15	27	24	1.95
33806311--33806447	70	2.0	70	95	0	247	27	25	12	35	1.92
33808269--33808309	15	2.7	16	74	11	50	7	26	0	65	1.18
33809403--33809465	26	2.3	27	84	10	76	12	11	1	74	1.14
33809511--33809554	12	3.6	12	93	6	79	13	2	6	77	1.07
33809511--33809554	13	3.5	13	87	6	72	13	2	6	77	1.07
33810699--33810835	70	2.0	70	95	0	247	27	25	12	35	1.92
33813043--33813305	40	6.6	40	87	3	316	26	28	20	24	1.99
33820979--33821241	40	6.6	40	87	3	316	26	28	20	24	1.99
33832380--33832426	20	2.3	20	81	0	58	23	12	34	29	1.92
33834765--33834827	21	3.0	21	88	2	90	30	3	33	33	1.74
33839998--33840043	24	1.9	24	100	0	92	26	21	26	26	2.00
33841538--33841571	12	2.8	12	95	0	59	82	5	2	8	0.93
33841538--33841583	13	3.6	13	91	2	67	80	4	4	10	0.99
33841534--33841585	13	4.2	13	87	7	65	73	5	3	17	1.19
33843365--33843421	27	2.1	27	83	0	69	63	1	28	7	1.30
33850480--33850514	13	2.7	13	90	0	52	45	0	11	42	1.40
33850736--33850799	23	2.8	23	92	4	103	23	12	20	43	1.85
33856202--33856236	18	1.9	18	88	11	54	22	20	0	57	1.41
33859148--33859201	20	2.7	20	82	0	63	24	20	18	37	1.94
33859148--33859221	30	2.5	30	86	8	98	21	20	18	39	1.93
33859148--33859212	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33859794--33859837	22	2.0	22	95	0	79	34	4	36	25	1.76
33863831--33863866	11	3.3	11	92	7	56	75	8	2	13	1.15
33866098--33866152	24	2.3	24	84	6	67	72	1	3	21	1.09
33866110--33866140	13	2.5	13	94	5	55	70	0	6	22	1.09
33866098--33866152	12	4.6	12	81	0	56	72	1	3	21	1.09
33866110--33866157	24	2.0	24	87	0	69	64	2	8	25	1.32
33866190--33866266	31	2.4	32	85	8	104	72	2	11	12	1.22
33867075--33867120	20	2.2	20	84	3	56	65	0	26	8	1.21
33867127--33867156	6	5.0	6	91	0	51	33	0	30	36	1.58
33868669--33868697	9	3.3	9	95	4	51	34	0	17	48	1.47
33871246--33871377	69	1.9	68	83	7	169	67	2	17	12	1.33
33871335--33871383	17	2.7	18	81	9	64	67	0	18	14	1.23
33871315--33871381	29	2.4	27	85	9	91	70	0	17	11	1.17
33871398--33871460	33	1.9	33	84	12	85	53	6	26	12	1.62
33874534--33874587	20	2.7	20	82	0	63	24	20	18	37	1.94
33874534--33874607	30	2.5	30	86	8	98	21	20	18	39	1.93
33874534--33874598	20	3.2	20	71	16	53	23	21	16	38	1.93
33881267--33881325	23	2.6	23	86	0	73	28	32	1	37	1.67
33881282--33881333	23	2.3	23	93	0	86	34	28	3	32	1.76
33885096--33885143	20	2.4	20	67	0	51	33	18	27	20	1.96
33886814--33886919	48	2.2	48	85	9	137	14	24	1	59	1.45
33887948--33887983	13	2.8	13	100	0	72	13	0	5	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33889511--33889558	20	2.4	20	67	0	51	33	18	27	20	1.96
33900161--33900196	18	2.1	17	89	5	54	75	2	16	5	1.12
33901296--33901413	55	2.1	55	84	6	159	25	22	13	38	1.90
33902037--33902091	20	2.8	20	88	0	83	29	16	29	25	1.97
33902976--33903005	16	1.9	15	93	6	51	43	33	3	20	1.68
33904526--33904566	11	3.6	11	93	6	73	14	0	7	78	0.96
33904525--33904566	12	3.6	12	93	6	77	14	0	7	78	0.95
33904523--33904576	23	2.4	23	84	3	74	12	3	5	77	1.07
33905618--33905735	55	2.1	55	84	6	159	25	22	13	38	1.90
33906358--33906412	20	2.8	20	88	0	83	29	16	29	25	1.97
33910797--33910852	12	4.7	12	74	14	53	64	0	23	12	1.27
33920579--33920647	27	2.6	26	81	6	93	33	18	13	34	1.90
33920925--33920988	34	1.9	32	90	6	101	31	23	23	21	1.99
33928027--33928172	27	5.4	27	92	3	233	32	18	15	33	1.93
33930448--33930500	24	2.1	26	86	10	74	52	5	0	41	1.25
33930550--33930640	45	2.0	44	82	2	110	40	4	27	27	1.75
33931884--33932589	353	2.0	353	98	0	1358	31	19	21	27	1.97
33935653--33935746	49	1.9	48	86	2	134	31	14	15	37	1.89
33938292--33938407	27	4.3	27	76	15	89	23	24	8	43	1.81
33939133--33939162	15	1.9	16	93	6	53	56	3	0	40	1.16
33939804--33939876	30	2.4	30	79	0	92	35	6	13	43	1.71
33939855--33940001	63	2.4	60	82	10	165	42	6	16	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33939887--33940014	60	2.1	60	84	10	161	46	4	13	35	1.64
33942294--33942697	109	3.7	108	89	3	603	33	18	16	31	1.93
33943332--33943378	12	3.9	12	94	0	85	65	6	0	27	1.16
33943333--33943378	3	15.3	3	90	0	74	67	4	0	28	1.10
33944973--33946604	125	13.1	125	95	0	2933	26	18	20	35	1.95
33947775--33947876	43	2.4	43	80	12	120	28	24	14	32	1.95
33949296--33949340	22	2.0	23	83	12	58	37	4	0	57	1.19
33949529--33949619	19	4.6	20	67	20	57	48	9	3	38	1.53
33949529--33949647	59	2.0	59	98	0	229	47	11	2	37	1.54
33951183--33951214	16	2.0	16	100	0	64	25	12	0	62	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207