genome.fa.s19.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  128  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39157491--39157591	19	5.2	18	71	15	58	61	1	2	33	1.22
39158099--39158143	21	2.1	21	84	8	56	26	2	4	66	1.22
39158516--39158566	19	2.7	18	82	8	57	29	3	1	64	1.22
39158510--39158571	10	6.4	9	73	12	52	30	3	1	64	1.19
39160066--39160133	26	2.5	27	81	11	77	23	5	7	63	1.43
39165960--39166003	16	2.6	16	85	10	52	77	6	2	13	1.07
39175764--39175792	14	2.0	15	93	6	51	20	0	3	75	0.94
39179932--39180000	29	2.3	29	85	5	84	47	15	14	21	1.81
39180403--39180754	125	2.8	125	93	0	607	30	16	21	31	1.95
39183861--39183885	10	2.5	10	100	0	50	48	0	8	44	1.32
39183869--39184050	55	3.3	55	84	10	262	46	5	9	38	1.61
39183913--39183996	18	4.6	18	70	11	62	51	4	7	36	1.51
39184048--39184466	29	15.2	29	72	20	211	26	0	26	45	1.56
39184087--39184416	47	6.8	47	76	15	332	27	0	26	46	1.56
39184116--39184250	18	7.3	18	66	27	79	28	0	23	46	1.58
39184087--39184416	93	3.4	93	78	15	337	27	0	26	46	1.56
39184286--39184410	18	5.6	23	83	16	117	28	0	24	47	1.52
39184337--39184491	18	9.1	18	72	13	130	27	0	25	46	1.57
39184487--39184550	25	2.5	26	87	2	103	37	12	0	50	1.41
39185645--39185676	7	4.6	7	100	0	64	59	12	0	28	1.34
39186758--39186808	10	5.0	10	78	4	57	64	0	0	35	0.94
39186758--39186823	31	2.2	30	91	2	105	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39186766--39186805	21	1.9	21	89	0	62	60	0	0	40	0.97
39186792--39186829	20	2.0	20	84	5	51	55	0	2	42	1.14
39186857--39186907	22	2.3	22	100	0	102	39	0	33	27	1.57
39192746--39192788	19	2.4	17	84	11	50	11	6	4	76	1.13
39201032--39201070	18	2.2	17	86	13	53	33	0	20	46	1.51
39201296--39201417	23	5.3	23	84	0	172	22	21	24	31	1.98
39201296--39201417	46	2.7	46	92	0	199	22	21	24	31	1.98
39203149--39203401	42	6.0	42	80	4	240	29	25	17	27	1.98
39203152--39203392	127	1.9	127	81	5	290	29	25	17	27	1.97
39204184--39204222	17	2.5	15	84	15	60	61	0	0	38	0.96
39204189--39204222	17	2.0	17	100	0	68	58	0	0	41	0.98
39204255--39204294	20	2.0	21	85	5	55	60	5	0	35	1.19
39204262--39204341	28	2.8	28	81	11	92	56	1	0	42	1.07
39204169--39204428	117	2.3	114	87	9	367	51	3	1	43	1.28
39213076--39213108	17	1.9	17	93	0	57	84	0	15	0	0.61
39213078--39213106	13	2.2	13	100	0	58	86	0	13	0	0.58
39213178--39213223	20	2.3	20	92	0	74	28	13	28	30	1.94
39214038--39214166	7	18.1	7	74	9	73	42	35	0	20	1.58
39214082--39214202	21	5.7	21	77	9	66	44	33	0	21	1.58
39214039--39214136	43	2.3	43	78	7	101	41	35	1	21	1.60
39214138--39214198	7	8.6	7	83	3	68	47	31	0	21	1.51
39214039--39214269	14	16.2	14	70	11	94	44	30	1	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39214463--39214501	14	2.8	14	84	0	51	51	33	0	15	1.44
39214869--39215034	41	4.0	41	80	1	136	32	25	18	23	1.97
39214869--39215034	82	2.0	82	85	0	224	32	25	18	23	1.97
39215074--39215187	39	2.9	38	82	7	131	25	20	17	36	1.94
39221172--39221286	44	2.6	44	85	2	149	35	13	22	27	1.92
39221172--39221305	46	3.0	45	82	4	153	35	14	23	26	1.93
39228534--39228648	44	2.6	44	83	2	140	35	13	21	28	1.92
39228541--39228667	44	2.8	45	80	4	139	33	14	23	29	1.94
39238214--39238281	26	2.6	27	81	6	88	36	8	19	35	1.83
39244503--39244542	16	2.5	16	87	0	62	35	7	30	27	1.84
39244696--39244930	120	2.0	120	98	0	452	51	5	0	42	1.29
39244706--39244893	61	3.1	61	71	11	206	51	6	1	40	1.34
39244916--39245012	49	2.0	48	88	6	142	50	11	7	30	1.65
39252198--39252317	39	3.1	39	92	0	195	33	34	18	14	1.91
39261649--39261753	27	3.9	27	78	2	113	14	10	33	41	1.80
39262927--39262953	6	4.5	6	100	0	54	14	14	51	18	1.76
39267280--39267559	43	6.5	43	90	0	434	25	22	21	31	1.98
39267283--39267607	86	3.8	86	89	2	465	25	22	21	31	1.98
39267280--39267629	129	2.7	129	83	5	352	26	22	20	30	1.98
39267922--39267967	21	2.2	21	92	0	74	2	45	15	36	1.58
39270357--39270411	22	2.5	23	76	5	60	32	7	18	41	1.78
39275494--39275551	22	2.7	21	73	7	62	32	6	18	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39280658--39281178	84	6.2	83	79	4	501	35	17	17	30	1.93
39281721--39281798	7	11.0	7	73	13	52	38	39	1	20	1.61
39281736--39281793	21	2.7	21	81	7	64	37	43	0	18	1.51
39282184--39282280	40	2.4	40	87	1	140	29	21	19	28	1.98
39282325--39282417	40	2.3	40	86	0	141	24	23	20	31	1.98
39284778--39284870	12	7.4	11	73	18	60	47	9	18	24	1.78
39284772--39284896	28	4.7	26	87	5	137	46	9	17	26	1.79
39284805--39284884	12	5.7	14	72	21	78	48	11	17	22	1.78
39284793--39284896	28	3.8	28	92	2	158	46	10	17	25	1.80
39285368--39285392	9	2.8	9	100	0	50	12	0	0	88	0.53
39285397--39285437	21	2.0	21	95	0	73	36	2	0	60	1.10
39287613--39287653	16	2.5	17	84	4	57	48	0	0	51	1.00
39287762--39288529	98	7.8	98	76	14	657	29	0	14	54	1.47
39287909--39288063	81	1.9	80	87	6	224	29	0	14	54	1.45
39287753--39288530	278	2.7	275	80	13	809	30	0	14	53	1.47
39287979--39288530	197	2.7	197	86	6	721	30	0	14	54	1.46
39287979--39288530	100	5.4	103	78	12	604	30	0	14	54	1.46
39292583--39292621	17	2.3	17	86	0	51	53	10	5	30	1.56
39293434--39293573	41	3.4	41	94	2	244	21	25	25	28	1.99
39294245--39294301	7	8.0	7	76	18	55	26	0	31	42	1.56
39294240--39294301	21	2.9	21	79	18	65	25	0	30	43	1.55
39294397--39294458	21	2.9	21	77	13	65	24	0	37	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39295203--39295261	20	3.0	20	81	13	68	50	0	5	44	1.24
39295212--39295244	12	2.9	12	86	13	52	51	0	6	42	1.26
39295205--39295278	30	2.5	29	80	10	87	48	1	4	45	1.29
39295205--39295272	20	3.4	19	76	8	64	51	0	4	44	1.21
39296793--39296910	59	2.0	57	93	3	200	21	18	11	49	1.78
39300036--39300260	43	5.2	43	80	3	265	20	17	32	30	1.96
39300032--39300260	86	2.7	86	85	4	302	20	17	31	30	1.96
39303155--39303213	20	3.0	20	82	7	68	35	8	10	45	1.68
39306639--39306714	21	3.5	21	80	7	80	39	21	22	17	1.92
39307790--39307847	30	2.0	28	86	6	80	5	24	3	67	1.27
39309204--39309274	23	3.0	24	85	6	101	22	19	21	36	1.95
39309207--39309313	23	5.0	21	77	7	99	18	20	24	36	1.95
39315582--39315856	137	2.0	138	94	0	489	40	13	6	39	1.70
39319521--39319551	16	1.9	16	93	0	53	6	29	6	58	1.48
39328835--39328875	13	3.4	13	74	19	52	48	14	0	36	1.44
39328833--39328884	23	2.3	23	93	3	88	48	13	0	38	1.43
39332048--39332072	12	2.1	12	100	0	50	0	8	48	44	1.32
39332254--39332298	23	2.0	22	87	12	65	8	17	0	73	1.08
39336038--39336083	22	2.0	22	87	8	65	34	17	2	45	1.61
39336318--39336398	25	3.3	23	79	14	74	32	20	22	24	1.98
39351394--39351429	17	2.1	18	89	5	56	63	5	22	8	1.43
39354419--39354448	11	2.7	11	100	0	60	26	0	16	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39356859--39356908	17	2.8	18	78	9	57	22	0	10	68	1.19
39375144--39375248	54	1.9	54	84	7	142	43	23	16	16	1.87
39375153--39375249	27	3.6	26	85	9	124	41	23	17	17	1.90
39374876--39375574	370	1.9	369	91	0	1137	31	20	25	22	1.98
39375523--39375576	27	2.0	27	96	0	99	42	22	16	18	1.89
39375740--39375816	26	3.0	26	83	7	102	18	18	27	36	1.94
39383260--39383357	27	3.7	27	82	6	110	40	22	16	20	1.91
39383819--39383867	20	2.5	20	93	0	80	26	36	20	16	1.93
39385064--39385098	12	2.9	12	86	0	52	37	11	2	48	1.54
39395071--39395293	104	2.2	103	92	2	367	17	18	31	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207