genome.fa.s19.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  157  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48198390--48198484	29	3.2	28	71	20	79	28	20	6	45	1.75
48198591--48198627	7	5.3	7	87	12	58	29	10	29	29	1.91
48198905--48199052	59	2.5	59	79	7	158	53	10	13	22	1.70
48199474--48199500	2	13.5	2	100	0	54	48	0	0	51	1.00
48201093--48201135	16	2.6	17	82	7	54	53	4	0	41	1.21
48201651--48201679	3	9.7	3	100	0	58	65	0	0	34	0.93
48204651--48204722	23	3.1	23	81	0	81	45	20	16	16	1.85
48204710--48204819	23	4.8	23	83	0	121	47	22	11	18	1.81
48204650--48204819	69	2.5	69	78	4	182	46	21	14	18	1.83
48204716--48204819	46	2.3	46	87	0	145	47	23	11	18	1.81
48207177--48207231	22	2.4	23	78	6	67	72	0	23	3	1.00
48207251--48207302	26	2.0	26	85	11	70	67	3	19	9	1.35
48211835--48211884	17	2.9	17	85	8	57	64	2	0	34	1.05
48220431--48220470	19	2.0	20	85	4	55	37	12	2	47	1.55
48221181--48221248	33	2.1	33	97	0	127	32	17	16	33	1.92
48222694--48222741	25	1.9	25	95	0	87	27	39	10	22	1.87
48227109--48227148	18	2.2	18	86	0	53	27	2	5	65	1.27
48240256--48240294	19	2.1	19	100	0	78	25	25	10	38	1.87
48240822--48240854	14	2.4	14	100	0	66	48	6	30	15	1.69
48245376--48245531	25	6.2	24	72	8	107	31	20	27	20	1.97
48245440--48245554	50	2.3	50	85	5	160	35	20	25	19	1.95
48253375--48253450	35	2.1	36	87	2	109	44	27	13	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48266937--48266966	14	2.1	15	93	6	53	46	0	0	53	1.00
48267421--48267831	155	2.7	153	90	3	646	33	15	21	29	1.94
48269503--48269539	16	2.3	16	90	0	56	37	8	27	27	1.84
48273094--48273145	23	2.3	22	75	21	54	9	23	1	65	1.32
48273103--48273157	12	4.6	12	73	15	51	12	23	0	63	1.29
48273139--48273176	17	2.2	18	85	4	51	10	23	2	63	1.39
48276931--48276964	15	2.1	17	89	10	54	47	14	0	38	1.45
48281837--48281872	17	2.1	17	100	0	72	25	11	0	63	1.27
48284363--48284578	51	4.3	50	91	2	342	27	25	15	31	1.95
48289034--48289058	11	2.3	11	100	0	50	56	0	0	44	0.99
48292294--48292326	16	2.1	16	88	5	50	69	0	0	30	0.88
48291989--48292519	192	2.7	194	78	4	579	42	9	16	31	1.81
48292547--48292615	34	2.0	34	100	0	138	40	11	14	33	1.82
48297438--48297494	25	2.3	25	81	6	62	59	0	1	38	1.08
48297436--48297501	21	3.0	21	75	16	71	57	0	1	40	1.08
48302713--48302759	20	2.3	20	85	0	67	19	25	31	23	1.98
48302840--48302888	25	2.0	25	83	0	62	18	36	20	24	1.94
48306699--48306882	71	2.6	71	83	5	232	28	18	21	30	1.97
48306667--48306880	69	3.1	71	79	8	233	28	17	21	31	1.96
48321095--48321302	31	6.7	31	86	0	274	45	17	8	28	1.77
48324865--48324950	27	3.2	27	81	6	95	19	15	20	44	1.87
48330273--48330341	33	2.1	33	100	0	138	27	28	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48331751--48331824	26	2.8	27	83	2	96	20	16	21	41	1.90
48331751--48331848	27	3.7	27	81	6	103	20	16	22	40	1.91
48338057--48338221	31	5.3	31	87	0	231	44	15	9	30	1.78
48338046--48338217	93	1.9	92	88	1	263	44	15	8	30	1.77
48341604--48341640	19	1.9	19	100	0	74	45	5	10	37	1.62
48342061--48342131	34	2.1	34	94	0	124	33	14	5	46	1.67
48343735--48343891	77	2.0	77	90	0	242	29	15	10	44	1.79
48346280--48346304	13	1.9	13	100	0	50	84	0	0	16	0.63
48348868--48348892	11	2.3	11	100	0	50	28	16	32	24	1.96
48353172--48353241	27	2.5	28	80	15	90	50	17	2	30	1.60
48353172--48353303	29	4.5	31	72	15	93	46	18	5	30	1.71
48353172--48353264	29	3.3	29	78	14	95	48	20	2	29	1.61
48353810--48353851	20	2.3	19	88	12	61	28	0	4	66	1.12
48356301--48356363	18	3.5	18	77	18	60	26	3	0	69	1.03
48356303--48356362	15	3.9	14	73	26	50	28	1	0	70	0.97
48358301--48358683	50	7.7	49	65	10	193	26	22	20	30	1.98
48358227--48358735	100	5.1	100	83	2	540	25	23	20	30	1.98
48358253--48358735	200	2.4	201	83	4	600	25	23	20	30	1.99
48358274--48358794	200	2.6	199	80	6	457	24	24	20	30	1.99
48358660--48358793	50	2.7	50	90	0	196	20	29	22	27	1.99
48358874--48358980	50	2.1	48	77	9	106	25	25	22	27	2.00
48358987--48359159	88	2.0	88	87	0	247	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48372606--48372698	29	3.3	29	76	14	86	48	20	3	27	1.65
48373242--48373283	20	2.3	19	88	12	61	28	0	4	66	1.12
48385908--48385969	18	3.4	19	80	6	67	30	1	0	67	1.00
48399063--48399114	24	2.2	24	89	0	77	28	3	9	57	1.48
48404780--48404837	28	2.1	28	84	12	75	55	5	0	39	1.22
48406978--48407043	28	2.4	29	77	7	75	18	27	18	36	1.94
48406979--48407052	29	2.7	27	73	10	69	20	25	17	36	1.94
48421194--48421279	43	2.0	43	90	0	136	22	30	18	29	1.97
48436896--48437488	44	13.5	45	67	13	281	31	20	23	24	1.98
48436892--48437599	132	5.4	132	92	1	1109	31	20	24	24	1.98
48439628--48439674	19	2.3	21	86	13	64	38	4	4	53	1.40
48442462--48442519	28	2.1	28	96	0	107	46	10	13	29	1.77
48442467--48442520	10	5.8	10	75	16	62	48	11	11	29	1.73
48444475--48444499	12	2.1	12	100	0	50	64	8	0	28	1.22
48444821--48444905	45	1.9	44	83	7	109	29	16	16	37	1.91
48446530--48446563	17	1.9	17	88	5	50	14	44	29	11	1.81
48447230--48447258	13	2.1	14	93	6	51	72	0	17	10	1.11
48454667--48454695	12	2.3	13	94	5	51	65	6	6	20	1.40
48464350--48464406	30	1.9	30	92	0	96	26	19	8	45	1.79
48482787--48482857	33	2.2	33	89	0	106	29	4	29	36	1.76
48485537--48485565	15	1.9	15	100	0	58	68	3	13	13	1.33
48488342--48488394	18	2.8	19	75	11	56	60	1	0	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48488379--48488428	17	2.9	17	80	13	57	62	0	0	38	0.96
48488421--48488467	23	2.0	23	100	0	94	31	17	17	34	1.92
48503533--48503680	43	3.5	43	79	8	158	29	25	15	29	1.96
48508211--48508433	40	5.6	40	93	0	374	22	28	21	27	1.99
48516618--48516835	39	5.6	39	88	6	316	22	28	21	27	1.99
48516618--48516836	77	2.8	79	87	6	320	22	28	21	27	1.99
48527881--48528345	27	17.2	27	85	4	580	43	19	18	18	1.88
48528550--48528621	26	2.8	26	78	0	81	18	25	22	34	1.96
48528693--48528749	28	2.0	28	86	0	78	28	26	22	22	1.99
48531017--48531129	43	2.7	43	86	4	149	30	27	15	25	1.96
48530975--48531139	43	3.9	43	75	7	140	31	25	14	28	1.95
48533228--48533271	7	6.3	7	92	7	72	61	0	0	38	0.96
48533215--48533267	22	2.4	21	78	15	54	60	0	0	39	0.97
48544597--48544664	16	4.2	16	94	0	118	27	0	33	38	1.57
48544900--48544934	18	2.0	17	88	5	52	54	0	0	45	0.99
48548779--48548827	22	2.3	21	82	10	55	40	0	2	57	1.10
48555431--48555483	21	2.5	21	93	0	88	30	37	9	22	1.86
48558070--48558098	14	2.0	15	93	6	51	51	6	6	34	1.55
48569345--48569396	26	2.0	26	100	0	104	34	15	23	26	1.94
48570421--48570521	51	1.9	52	82	6	123	43	18	23	13	1.86
48571587--48572268	45	15.7	45	70	16	266	29	19	23	27	1.98
48571631--48572515	172	5.1	171	82	7	1024	29	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48571975--48572393	216	1.9	218	92	2	702	29	19	22	28	1.98
48572238--48572515	128	2.2	128	93	1	468	28	18	20	32	1.96
48571677--48572515	44	19.5	44	69	13	279	29	19	22	29	1.98
48575690--48575784	28	3.2	28	63	16	66	38	9	21	30	1.85
48575666--48575843	60	3.0	60	94	1	313	39	8	23	28	1.85
48575734--48575830	32	3.2	32	60	16	78	37	10	21	30	1.87
48583510--48583583	21	3.5	21	81	10	80	36	27	21	14	1.93
48583510--48583570	21	3.0	21	87	2	88	32	27	24	14	1.95
48584480--48584522	16	2.8	15	86	6	59	4	13	4	76	1.10
48584537--48584565	3	9.7	3	100	0	58	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207