genome.fa.s19.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  159  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48930767--48930831	32	2.0	32	100	0	130	21	15	18	44	1.86
48934570--48934604	18	1.9	19	88	11	56	45	8	14	31	1.75
48951224--48951269	23	2.0	23	100	0	92	60	17	4	17	1.51
48952420--48952469	24	2.1	24	81	7	57	78	0	10	12	0.98
48953241--48953267	14	1.9	14	100	0	54	33	0	0	66	0.92
48956815--48956871	22	2.6	22	86	2	80	35	0	3	61	1.13
48961872--48961919	18	2.6	18	83	3	60	41	45	2	10	1.50
48961896--48961920	13	1.9	13	100	0	50	40	48	0	12	1.40
48961961--48962009	6	8.0	6	88	4	71	65	14	2	18	1.37
48962016--48962074	9	6.6	9	86	7	66	30	10	16	42	1.82
48962016--48962074	18	3.3	18	81	9	75	30	10	16	42	1.82
48962019--48962071	27	2.0	27	88	0	79	28	11	18	41	1.85
48962580--48962775	30	6.6	30	82	2	198	16	17	27	38	1.91
48964717--48964745	9	3.2	9	100	0	58	31	0	20	48	1.50
48977993--48978303	83	3.7	84	76	13	232	36	21	16	25	1.94
48977960--48978329	29	13.2	28	79	7	305	36	22	15	25	1.94
48977898--48978329	28	15.5	27	76	9	254	34	22	16	25	1.95
48997199--48997258	20	3.0	20	73	24	54	31	1	1	65	1.13
48997976--48998016	18	2.3	18	91	0	64	53	4	0	41	1.22
49001129--49001225	6	15.7	6	68	6	59	69	2	19	9	1.26
49001129--49001225	18	5.2	18	71	6	68	69	2	19	9	1.26
49001235--49001273	18	2.3	18	86	8	55	69	0	17	12	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49003428--49003486	20	3.0	20	82	5	66	27	28	11	32	1.92
49009234--49009269	15	2.5	14	86	8	54	44	8	0	47	1.33
49013974--49014045	29	2.5	29	82	13	94	72	2	0	25	0.98
49013970--49014045	17	4.6	17	75	19	72	71	2	0	26	1.00
49013974--49014045	9	7.7	9	72	22	51	72	2	0	25	0.98
49017825--49017868	20	2.2	20	84	4	54	72	2	2	22	1.07
49020036--49020115	33	2.4	33	81	8	92	16	21	17	45	1.86
49020036--49020132	33	2.9	33	78	6	88	18	22	15	43	1.88
49034608--49034638	16	1.9	16	93	0	53	25	19	22	32	1.97
49037996--49038026	14	2.3	13	94	5	53	67	0	19	12	1.22
49039386--49040684	132	9.9	132	88	3	1867	28	19	24	27	1.98
49039946--49040530	44	13.3	44	64	15	167	28	19	25	27	1.99
49039609--49040441	44	18.9	44	64	15	208	28	19	24	27	1.98
49039386--49040684	396	3.3	395	92	2	2068	28	19	24	27	1.98
49043890--49043953	32	2.0	32	100	0	128	37	25	3	34	1.72
49048585--49048697	41	2.8	41	85	9	142	23	18	30	28	1.98
49049087--49049120	15	2.3	15	89	0	50	14	0	44	41	1.45
49049343--49049406	15	4.4	15	76	9	62	21	0	31	46	1.52
49049368--49049448	28	2.9	28	77	5	83	22	1	33	43	1.61
49049343--49049412	22	3.2	21	80	11	79	21	0	32	45	1.52
49049374--49049448	21	3.6	21	73	7	55	21	1	34	42	1.61
49051445--49051800	193	1.9	191	82	5	459	28	9	19	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49052819--49053067	87	2.9	86	83	3	286	26	18	24	29	1.98
49052819--49053063	43	5.7	43	82	1	294	26	19	25	28	1.98
49052819--49053053	130	1.8	130	85	3	330	27	18	25	28	1.98
49063815--49063872	30	1.9	30	89	0	89	74	5	20	0	1.01
49063826--49063880	5	10.8	5	83	13	60	74	3	20	1	1.06
49068562--49068621	27	2.2	28	85	8	79	46	1	5	46	1.34
49069040--49069095	21	2.7	21	91	0	94	16	8	41	33	1.79
49070244--49070276	17	1.9	18	88	11	52	42	0	15	42	1.46
49076486--49076524	15	2.7	15	92	4	62	23	0	2	74	0.94
49080450--49080509	30	1.9	32	83	16	81	75	1	20	3	1.04
49080448--49080517	19	4.0	17	70	26	56	75	1	20	2	1.00
49080467--49080520	28	2.0	27	88	3	81	74	3	18	3	1.12
49081152--49081289	71	1.9	71	100	0	276	33	15	14	36	1.88
49089662--49089755	38	2.5	38	83	0	125	22	17	28	31	1.96
49092850--49093261	23	17.6	23	71	12	216	43	16	12	27	1.84
49092847--49093152	47	6.5	47	70	13	180	43	16	12	27	1.84
49092836--49093263	70	6.1	70	93	1	667	42	17	12	28	1.84
49093986--49094054	28	2.5	28	87	0	93	30	26	13	30	1.93
49094110--49094148	14	2.7	15	84	8	53	30	20	0	48	1.50
49095299--49095365	30	2.2	30	91	0	107	16	37	26	19	1.93
49096344--49096417	18	3.7	18	70	27	60	25	25	0	48	1.51
49096349--49096432	43	2.0	43	90	4	134	23	25	1	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49101430--49101491	6	11.0	6	75	19	62	17	0	4	77	0.94
49101430--49101496	17	4.1	16	85	9	82	16	0	5	77	0.95
49101430--49101484	27	2.0	26	86	13	76	18	0	3	78	0.90
49101430--49101503	33	2.2	33	85	4	96	14	1	5	78	1.00
49101430--49101491	23	2.8	24	78	11	69	17	0	4	77	0.94
49105103--49105173	30	2.3	31	79	13	76	53	2	0	43	1.15
49105639--49105671	6	5.5	6	96	0	57	18	0	39	42	1.50
49115756--49115791	18	1.9	20	88	11	58	55	2	11	30	1.49
49128476--49128614	33	4.2	33	76	3	127	30	4	40	24	1.74
49137432--49137495	21	3.0	21	84	4	85	12	20	20	46	1.82
49150890--49150934	24	1.9	24	86	13	67	44	15	11	28	1.81
49160559--49160740	91	2.0	91	100	0	364	36	12	28	23	1.90
49172585--49172629	21	2.1	22	83	4	56	68	0	2	28	1.01
49172606--49172646	18	2.2	19	87	12	59	65	0	4	29	1.13
49172606--49172652	17	2.6	18	87	12	62	63	0	4	31	1.13
49173021--49173060	16	2.5	17	80	19	50	37	2	0	60	1.11
49175672--49176145	263	1.8	263	87	1	700	34	9	27	29	1.87
49190095--49190125	3	10.3	3	92	0	53	70	0	29	0	0.87
49201359--49201477	37	3.0	40	73	9	127	34	21	16	26	1.95
49202010--49202040	15	2.0	16	93	6	55	41	6	0	51	1.27
49207954--49208031	28	2.9	27	86	3	95	29	37	23	10	1.88
49208740--49208771	14	2.1	16	88	11	50	43	21	0	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49208771--49208813	22	2.0	21	90	4	68	23	25	6	44	1.78
49208977--49209073	40	2.5	38	76	5	97	32	25	16	24	1.96
49218068--49218101	16	2.1	16	88	0	50	0	5	14	79	0.91
49228310--49228465	36	4.1	36	78	15	177	35	14	21	28	1.92
49228347--49228599	46	5.8	45	83	10	323	33	15	22	28	1.95
49228277--49228599	82	3.9	81	85	8	420	34	14	22	28	1.94
49234158--49234204	17	2.7	17	75	15	51	51	8	4	36	1.52
49235897--49235937	20	2.2	18	87	12	57	36	2	24	36	1.69
49239220--49239255	15	2.4	15	100	0	72	33	36	0	30	1.58
49242558--49242600	20	2.2	20	95	0	77	37	4	16	41	1.69
49245168--49245222	22	2.3	23	78	9	58	58	3	1	36	1.26
49245275--49245316	21	2.0	22	90	4	68	64	4	2	28	1.26
49246855--49246965	44	2.5	43	80	8	109	32	21	18	27	1.97
49246894--49247489	44	13.6	45	72	13	313	27	22	20	29	1.99
49246801--49247630	218	3.8	218	90	0	1266	27	22	20	30	1.98
49259594--49259636	22	2.0	22	86	9	61	55	4	2	37	1.33
49259701--49259742	21	2.0	22	90	4	68	64	4	2	28	1.26
49261278--49261388	44	2.5	43	78	8	109	33	21	18	26	1.97
49262294--49262336	20	2.2	20	95	0	77	37	4	16	41	1.69
49265015--49265056	21	2.0	22	90	4	68	64	4	2	28	1.26
49268537--49268598	31	2.0	31	83	0	79	41	12	8	37	1.73
49272636--49272729	23	4.1	23	85	0	134	22	25	4	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49277140--49277233	23	4.1	23	85	0	134	22	25	4	47	1.69
49281561--49281609	16	3.1	15	79	2	53	36	0	6	57	1.24
49281639--49281685	16	2.8	17	81	9	53	70	0	2	27	0.99
49286125--49286208	5	16.8	5	73	9	55	38	20	7	34	1.80
49286143--49286232	25	3.6	24	77	16	78	42	21	6	30	1.78
49297477--49297516	20	2.0	20	95	0	71	27	20	22	30	1.98
49302493--49302577	21	4.0	22	87	3	120	51	12	31	3	1.57
49305572--49305624	23	2.3	23	90	3	79	16	0	9	73	1.08
49305572--49305623	6	8.8	6	93	4	79	17	0	9	73	1.09
49305568--49305625	6	9.8	6	88	3	64	15	0	8	75	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207