genome.fa.s19.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  171  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52865220--52865304	6	13.7	6	81	7	71	7	4	8	80	1.03
52874906--52874942	7	5.3	7	90	0	56	16	0	35	48	1.46
52876643--52876675	9	3.7	9	84	15	50	54	9	0	36	1.32
52876643--52876677	18	1.9	18	100	0	70	51	11	0	37	1.38
52879870--52879924	25	2.2	25	96	0	101	38	20	16	25	1.92
52883373--52883443	18	4.1	18	71	15	60	49	1	22	26	1.58
52884514--52884573	30	2.0	30	90	0	93	18	26	31	23	1.97
52885634--52885658	13	1.9	13	100	0	50	40	8	12	40	1.72
52886023--52886068	21	2.2	21	88	7	67	43	4	2	50	1.34
52890769--52890888	34	3.5	34	87	8	163	33	32	11	22	1.90
52898398--52898465	27	2.6	27	77	15	70	45	2	2	48	1.32
52898435--52898478	11	4.0	11	82	8	54	36	0	2	61	1.09
52906742--52906795	25	2.1	26	83	10	67	29	3	3	62	1.29
52912843--52912881	16	2.4	16	95	0	69	30	0	23	46	1.53
52920047--52920110	19	3.4	19	75	12	60	35	4	0	59	1.18
52920178--52920239	21	3.2	19	76	17	56	27	1	6	64	1.27
52920189--52920240	21	2.5	21	78	6	61	28	1	5	63	1.28
52924470--52924497	5	5.6	5	100	0	56	64	35	0	0	0.94
52930485--52930554	36	1.9	37	85	2	97	27	8	7	57	1.55
52936301--52936337	17	2.2	17	90	0	56	43	35	5	16	1.71
52937909--52938142	43	5.6	41	77	3	173	29	25	20	23	1.99
52937898--52938142	42	5.8	42	79	4	235	30	25	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52937946--52938142	85	2.3	85	78	3	218	28	27	20	23	1.99
52938576--52938626	21	2.4	21	90	0	75	1	45	17	35	1.60
52944768--52945043	46	5.6	47	83	11	217	34	15	21	28	1.94
52944733--52945054	98	3.3	97	84	10	438	34	14	22	28	1.93
52945018--52945163	37	4.0	37	93	1	242	36	16	21	24	1.94
52947295--52947392	20	5.0	21	75	15	102	42	5	5	46	1.47
52947261--52947380	57	2.1	57	92	0	195	42	4	7	45	1.51
52947295--52947411	20	6.0	20	72	15	93	41	4	5	48	1.45
52947274--52947393	57	2.1	57	96	0	222	41	4	6	47	1.49
52948241--52948275	13	2.7	13	100	0	70	40	17	8	34	1.80
52949595--52949630	15	2.3	16	90	4	56	36	2	0	61	1.11
52949756--52949830	21	3.6	21	79	0	78	45	34	2	17	1.62
52949768--52949830	7	9.0	7	73	0	54	44	36	1	17	1.59
52949909--52949984	21	3.6	21	73	16	75	52	30	0	17	1.44
52949909--52949951	22	2.0	21	90	4	68	53	30	0	16	1.43
52950692--52951143	227	2.0	229	86	2	633	24	20	20	35	1.96
52950686--52951183	114	4.4	113	84	5	601	23	21	20	35	1.96
52954537--52954821	43	6.7	43	79	9	282	27	29	18	24	1.98
52954537--52954822	86	3.3	84	82	4	333	27	29	18	24	1.98
52954570--52954848	128	2.2	128	83	1	353	27	30	17	24	1.97
52956086--52956129	22	2.0	22	90	0	70	9	18	27	45	1.79
52956251--52956376	44	2.9	43	85	2	171	22	19	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52956360--52956566	43	4.8	43	73	8	172	27	30	18	22	1.98
52956337--52956580	128	1.9	128	81	5	296	28	30	19	21	1.98
52956916--52957008	21	4.4	21	81	0	105	6	45	15	33	1.71
52957004--52957145	66	2.2	66	88	5	207	13	26	19	40	1.88
52957004--52957169	66	2.5	65	86	4	199	13	25	19	40	1.88
52962566--52963166	9	67.8	9	68	20	197	38	1	14	45	1.53
52962571--52962690	16	7.9	16	69	19	96	35	1	17	45	1.58
52962585--52962739	25	6.2	25	77	11	129	38	1	15	45	1.55
52962611--52962761	34	4.3	35	73	17	118	38	1	16	43	1.56
52962566--52962782	25	8.8	26	70	17	106	37	1	16	44	1.57
52962761--52963112	31	11.5	31	80	13	326	38	1	13	46	1.52
52962827--52962858	16	2.0	16	100	0	64	31	0	25	43	1.55
52963099--52963131	16	2.1	16	100	0	66	30	0	24	45	1.53
52963068--52963165	47	2.0	49	86	5	137	36	0	15	47	1.45
52963230--52963262	16	2.1	16	100	0	66	30	18	0	51	1.46
52964159--52964221	33	1.9	33	93	0	108	65	14	0	20	1.27
52964175--52964213	19	2.0	19	85	5	51	69	10	0	20	1.17
52965605--52965658	23	2.5	22	82	8	58	44	0	7	48	1.31
52967160--52967629	41	11.5	41	88	3	644	34	25	20	19	1.96
52968178--52968203	5	5.2	5	100	0	52	19	0	0	80	0.71
52969256--52969344	35	2.6	36	78	10	114	41	6	1	50	1.36
52969277--52969436	58	2.8	58	97	0	293	39	6	1	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52969711--52969751	14	2.9	14	82	13	57	31	43	0	24	1.54
52969989--52970027	14	2.7	14	84	4	51	38	38	5	17	1.72
52970056--52970082	14	1.9	14	100	0	54	37	37	0	25	1.57
52981383--52981420	15	2.5	15	84	12	51	50	0	0	50	1.00
52984541--52984574	14	2.4	14	90	0	50	73	2	0	23	0.97
52985125--52985198	34	2.2	34	83	7	98	31	2	16	50	1.59
53002029--53002228	35	5.6	35	70	14	113	30	21	12	36	1.90
53001992--53002220	108	2.1	108	85	0	305	31	20	11	36	1.88
53002363--53002454	36	2.6	36	84	6	123	36	9	13	40	1.77
53002100--53002412	135	2.3	135	84	0	401	33	18	10	37	1.85
53003585--53003634	25	2.0	25	100	0	100	56	8	0	36	1.29
53003683--53003776	27	3.5	27	85	5	120	26	27	26	19	1.99
53003856--53003892	11	3.5	11	88	7	58	70	0	29	0	0.88
53003918--53003956	19	2.0	21	85	10	55	23	0	10	66	1.22
53004032--53004063	3	10.7	3	100	0	64	0	0	31	68	0.90
53004253--53004305	26	2.0	26	96	0	97	43	0	7	49	1.31
53005793--53005868	27	2.8	27	85	0	107	14	30	28	26	1.95
53005910--53005961	26	2.0	26	92	0	86	34	0	11	53	1.37
53018419--53018760	64	5.2	64	64	20	179	33	15	11	38	1.85
53018345--53018821	131	3.6	131	85	1	616	32	16	12	38	1.87
53020766--53020795	2	15.0	2	100	0	60	50	0	0	50	1.00
53025665--53025722	30	2.0	29	86	10	82	32	3	1	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53037972--53038009	19	2.0	20	89	5	60	42	2	5	50	1.39
53039011--53039089	31	2.6	31	85	2	88	36	8	11	43	1.72
53039031--53039089	31	1.9	31	96	0	109	35	11	10	42	1.76
53040157--53040207	20	2.4	21	83	6	59	5	25	3	64	1.33
53043010--53043049	17	2.4	17	95	0	71	42	17	5	35	1.71
53047707--53047738	5	6.6	5	92	7	57	18	0	0	81	0.70
53047884--53047933	22	2.3	22	96	0	91	12	42	40	6	1.67
53048706--53048737	3	10.7	3	93	0	55	34	3	0	62	1.11
53052190--53052227	19	2.0	19	94	0	67	60	0	2	36	1.11
53052207--53052348	56	2.5	54	77	11	133	64	0	3	30	1.15
53052233--53052272	19	2.2	18	86	4	53	80	2	2	15	0.93
53052237--53052411	10	18.2	10	65	21	63	64	1	5	29	1.24
53052256--53052368	29	3.9	30	79	11	128	61	0	6	31	1.20
53052267--53052340	30	2.5	28	86	6	94	64	0	5	29	1.15
53052267--53052383	59	2.0	60	86	5	166	61	0	7	30	1.24
53052258--53052408	19	7.8	18	69	15	81	62	0	5	30	1.23
53052277--53052408	59	2.3	59	77	9	137	62	0	6	30	1.24
53052579--53052636	29	2.0	28	83	9	73	32	3	3	60	1.30
53054187--53054227	20	2.0	20	100	0	82	46	4	14	34	1.66
53066221--53066274	28	2.0	28	85	3	74	50	1	11	37	1.49
53068930--53069032	54	1.9	54	87	0	152	19	32	19	29	1.96
53081762--53081996	64	3.8	61	75	13	176	27	30	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53093637--53093722	43	2.0	42	88	2	127	30	20	22	26	1.98
53098574--53098598	13	1.9	13	100	0	50	32	4	8	56	1.47
53098697--53098995	50	5.8	50	88	2	391	26	23	28	21	1.99
53113357--53113485	55	2.3	56	74	16	124	54	3	0	41	1.19
53117547--53117598	24	2.2	24	86	6	70	30	5	7	55	1.52
53119208--53119256	24	2.0	24	92	0	80	34	2	8	55	1.41
53119727--53119766	20	2.0	20	90	0	62	27	10	12	50	1.72
53119712--53119778	34	1.9	35	87	3	100	32	8	11	46	1.72
53121772--53121805	17	2.0	17	94	0	59	44	50	0	5	1.26
53126409--53126442	17	2.0	17	88	0	50	44	52	0	2	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207