genome.fa.s19.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  99  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29490606--29490674	9	7.2	9	77	18	52	57	0	1	40	1.07
29493292--29493331	20	1.9	19	85	14	53	25	35	0	40	1.56
29500458--29500483	9	2.9	9	100	0	52	76	0	0	23	0.78
29501348--29501382	17	2.0	18	88	5	54	42	11	11	34	1.77
29504167--29504308	71	2.0	71	100	0	284	32	15	7	45	1.73
29526840--29526905	28	2.4	27	77	7	78	33	22	22	21	1.97
29527116--29527382	32	8.4	32	79	3	252	36	21	20	20	1.95
29527425--29527489	27	2.5	26	83	14	80	35	20	23	21	1.96
29527553--29527601	23	2.1	24	88	3	73	46	24	8	20	1.77
29527632--29528154	27	19.6	26	84	6	484	24	22	18	34	1.96
29527651--29528154	81	6.3	80	81	6	536	24	21	18	34	1.96
29528063--29528168	26	4.0	26	87	2	140	18	20	23	36	1.95
29532944--29533007	33	1.9	33	100	0	128	43	9	18	28	1.81
29542852--29542950	20	4.9	20	77	3	110	12	29	20	38	1.88
29542850--29542950	40	2.5	40	90	0	157	11	28	20	38	1.88
29559672--29559740	10	7.4	9	73	16	61	23	1	1	73	0.99
29559697--29559738	22	2.0	21	90	4	66	23	0	2	73	0.94
29559870--29559931	3	20.7	3	77	12	65	29	6	1	62	1.29
29559924--29560003	33	2.4	33	82	14	85	13	1	8	76	1.08
29559941--29560008	21	3.3	21	75	15	70	13	1	10	75	1.12
29571710--29571901	50	3.7	50	81	3	195	23	27	21	27	1.99
29573819--29573880	29	2.1	31	82	11	76	40	6	19	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29580416--29580462	21	2.2	21	84	0	58	25	36	25	12	1.92
29580699--29580818	64	1.9	63	94	3	215	34	28	15	21	1.94
29591105--29591145	19	2.2	19	86	4	57	41	9	4	43	1.59
29591672--29591716	20	2.3	20	84	3	65	15	15	20	48	1.80
29591722--29591746	13	1.9	13	100	0	50	40	8	8	44	1.63
29596067--29596138	25	2.8	26	83	6	103	27	23	19	29	1.98
29600474--29600502	12	2.4	12	100	0	58	55	24	6	13	1.63
29603605--29603710	40	2.7	40	97	1	196	28	27	17	26	1.98
29608119--29608294	27	6.6	27	82	6	187	29	28	14	27	1.95
29608140--29608293	80	1.9	81	84	6	206	29	28	14	27	1.96
29616224--29616400	27	6.6	27	84	3	205	29	28	14	27	1.95
29621076--29621262	29	6.4	30	72	16	99	40	10	25	24	1.86
29621091--29621144	27	2.0	27	86	10	76	42	14	24	18	1.88
29621132--29621288	30	5.3	30	79	8	117	40	8	24	26	1.84
29621020--29621288	116	2.3	116	81	5	319	40	11	23	24	1.88
29621185--29621262	29	2.7	30	86	6	106	44	8	25	20	1.80
29621020--29621271	30	8.6	29	72	14	94	40	11	24	23	1.88
29623847--29623904	20	2.9	20	77	10	64	12	29	20	37	1.89
29640507--29640571	27	2.4	27	89	0	94	38	21	15	24	1.92
29640794--29640857	26	2.5	26	92	0	101	26	20	14	39	1.90
29640793--29640870	26	3.0	26	84	0	66	28	20	12	38	1.89
29640981--29641069	28	3.2	28	90	1	135	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29646178--29646202	7	3.6	7	100	0	50	60	0	12	28	1.32
29649095--29649142	20	2.4	20	100	0	96	52	10	29	8	1.65
29652523--29653216	338	2.0	342	96	3	1270	42	13	26	17	1.86
29654631--29654655	11	2.3	11	100	0	50	56	20	8	16	1.65
29657141--29657208	29	2.3	29	85	5	93	27	30	13	27	1.94
29657030--29657357	174	1.9	174	97	0	620	30	24	14	29	1.95
29657310--29657388	29	2.7	30	82	13	110	29	30	15	25	1.96
29660901--29661010	24	4.6	24	81	0	103	26	8	20	45	1.78
29661182--29661370	64	3.0	64	79	1	200	23	16	19	41	1.90
29661182--29661370	32	5.9	32	76	7	143	23	16	19	41	1.90
29661192--29661371	96	1.9	96	81	2	218	22	17	18	41	1.90
29661376--29661422	22	2.1	22	88	0	67	25	17	10	46	1.79
29664326--29664373	22	2.2	23	82	14	57	56	6	0	37	1.25
29667068--29667100	14	2.3	15	89	5	50	24	3	3	69	1.16
29667067--29667110	12	3.5	12	79	11	52	25	9	2	63	1.35
29667144--29667192	6	8.5	6	82	14	50	12	12	0	75	1.05
29667144--29667192	23	2.1	23	85	7	64	12	12	0	75	1.05
29667139--29667192	12	4.8	11	82	10	56	12	11	0	75	1.04
29667159--29667222	23	2.6	25	76	18	62	14	9	3	73	1.20
29673675--29675720	341	6.0	341	98	0	3914	38	13	15	32	1.86
29676434--29676480	23	2.0	23	88	8	69	14	14	14	55	1.70
29677711--29677739	7	4.1	7	100	0	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29678637--29678679	12	3.5	12	81	6	50	27	9	2	60	1.40
29678637--29678669	13	2.6	13	85	4	50	24	6	3	66	1.28
29678714--29678774	6	9.7	6	79	10	68	13	3	6	77	1.09
29678810--29678834	6	4.2	6	100	0	50	16	0	0	84	0.63
29689910--29690030	42	2.8	42	80	8	120	31	25	16	26	1.96
29694693--29694779	37	2.3	37	78	5	86	33	18	2	45	1.62
29694980--29695159	51	3.5	51	81	5	213	30	27	17	24	1.97
29694975--29695161	101	1.8	101	89	3	295	29	27	17	25	1.97
29697688--29697956	58	4.6	58	82	6	276	37	12	25	24	1.91
29697688--29697942	29	8.8	29	80	6	248	36	12	25	24	1.92
29697771--29697942	87	2.0	87	90	2	274	36	12	25	25	1.91
29697977--29698062	29	2.9	29	81	3	100	37	12	25	24	1.91
29697688--29698048	29	12.4	29	75	9	198	37	12	25	24	1.91
29701552--29701595	22	1.9	23	86	9	63	65	13	2	18	1.36
29703308--29703357	27	1.9	25	84	8	64	8	32	2	58	1.39
29704296--29704330	15	2.4	14	86	9	52	25	17	5	51	1.67
29704366--29704400	11	3.1	11	88	8	52	17	8	11	62	1.52
29704368--29704397	12	2.5	12	94	0	51	10	6	10	73	1.25
29715212--29715262	20	2.5	20	90	6	77	27	13	17	41	1.87
29734962--29735000	21	1.9	19	85	10	51	23	5	15	56	1.59
29740193--29740316	61	2.0	62	90	4	198	28	13	12	45	1.79
29742132--29742157	7	3.7	7	100	0	52	26	30	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29742129--29742164	14	2.6	14	86	0	54	25	33	2	38	1.70
29742080--29742212	64	2.1	65	86	1	187	27	24	13	34	1.93
29744673--29744732	29	2.0	31	93	6	106	40	30	3	26	1.72
29745540--29745622	36	2.3	36	83	6	96	40	20	4	33	1.74
29746837--29746892	29	2.0	28	82	10	69	50	7	0	42	1.30
29749481--29749591	27	4.2	26	75	12	100	19	14	19	45	1.84
29751611--29751687	39	1.9	39	84	2	100	35	22	20	22	1.96
29751741--29752056	41	7.8	41	79	5	311	23	21	25	29	1.99
29751756--29751980	122	1.9	121	86	4	328	24	21	23	30	1.99
29751755--29752054	163	1.8	162	86	3	433	24	21	24	30	1.99
29752383--29752502	22	5.6	21	72	11	75	25	0	30	43	1.60
29752441--29752489	21	2.3	21	75	0	53	28	0	30	40	1.57
29752467--29752533	7	9.1	7	72	15	55	19	0	37	43	1.51
29752495--29752531	8	4.9	8	83	9	51	16	0	37	45	1.47
29752495--29752533	15	2.6	15	95	0	69	17	0	38	43	1.50
29754609--29754654	21	2.2	21	88	0	65	15	8	26	50	1.73
29756589--29756616	14	2.0	14	100	0	56	28	14	7	50	1.69
29756603--29756685	43	1.9	43	85	0	112	31	10	9	48	1.70
29756966--29756991	5	5.2	5	100	0	52	80	0	0	19	0.71
29757048--29757254	43	4.8	43	76	8	170	27	16	23	31	1.96
29775067--29775516	147	3.1	147	86	6	542	42	4	9	42	1.59
29775067--29775441	146	2.5	148	89	5	544	43	4	9	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29775346--29775385	21	1.9	21	84	0	53	45	0	15	40	1.46
29775066--29775521	146	3.1	146	84	7	534	43	4	9	42	1.59
29777834--29777866	14	2.4	14	95	5	59	81	0	6	12	0.85
29777858--29777893	16	2.2	16	100	0	72	77	5	11	5	1.10
29779535--29779586	27	1.9	27	96	0	95	13	25	32	28	1.93
29779459--29779681	103	2.2	104	92	2	369	17	19	31	31	1.95
29779600--29779751	71	2.1	72	92	1	252	23	17	29	30	1.97
29786659--29786696	5	7.6	5	100	0	76	81	0	18	0	0.69
29786834--29786909	37	2.1	37	94	0	134	48	7	7	35	1.61
29787364--29787433	33	2.1	34	81	7	81	45	10	4	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207