genome.fa.s19.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  116  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855147--34855183	18	2.1	18	94	0	65	37	21	8	32	1.83
34857735--34857856	23	5.3	23	90	0	199	20	20	26	32	1.97
34857986--34858058	38	1.9	37	86	8	103	45	1	21	31	1.61
34861329--34861400	25	2.9	25	95	0	126	15	29	31	23	1.95
34861330--34861397	12	5.5	12	68	6	55	13	27	33	25	1.93
34864422--34864508	25	3.5	25	85	0	93	26	25	18	29	1.98
34864447--34864517	25	2.9	25	85	2	72	25	25	19	29	1.99
34877287--34877327	18	2.3	19	79	12	50	7	31	14	46	1.72
34878531--34878606	39	1.9	39	97	0	143	35	18	3	42	1.69
34881128--34881218	24	3.8	23	78	10	85	32	5	7	53	1.52
34884815--34884839	11	2.3	11	100	0	50	24	0	12	64	1.27
34885433--34885481	26	2.0	24	85	14	66	28	16	32	22	1.95
34890403--34890456	21	2.5	21	77	14	56	20	31	7	40	1.80
34905125--34905185	32	1.9	32	86	6	88	29	18	21	31	1.96
34908429--34908453	11	2.3	11	100	0	50	72	0	0	28	0.86
34908755--34908881	40	3.2	40	88	0	191	32	18	29	20	1.96
34908818--34908881	20	3.2	20	65	8	58	28	20	32	18	1.96
34917306--34917408	41	2.5	41	78	6	109	31	22	23	23	1.99
34919418--34919548	27	4.9	27	71	1	102	26	21	12	39	1.88
34919418--34919591	53	3.3	53	85	0	222	26	22	11	39	1.88
34919663--34919833	54	3.2	52	67	24	147	26	30	16	26	1.96
34919635--34919860	108	2.1	108	97	0	425	27	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34919687--34919854	54	3.1	54	67	24	163	26	30	15	27	1.96
34919700--34919922	27	8.3	27	70	16	117	26	28	14	30	1.95
34926430--34926480	23	2.2	23	85	0	66	29	11	19	39	1.87
34927981--34928263	50	5.6	50	77	8	243	24	28	19	27	1.98
34928037--34928134	49	2.1	45	81	12	110	21	31	21	25	1.98
34927981--34928263	99	2.8	100	78	6	259	24	28	19	27	1.98
34931298--34931348	23	2.2	23	78	0	57	29	9	21	39	1.85
34945887--34945963	38	2.0	38	94	0	136	40	11	12	35	1.80
34945902--34945962	19	3.2	19	67	17	54	40	14	13	31	1.84
34950083--34950126	16	2.8	16	85	0	61	38	2	27	31	1.69
34954151--34954291	58	2.4	59	84	8	173	53	0	2	43	1.20
34954177--34954277	27	3.3	32	70	17	88	54	0	0	43	1.13
34954265--34954311	16	3.3	14	77	13	51	53	0	0	46	1.00
34954151--34954311	58	2.7	58	83	9	159	53	0	2	43	1.18
34957363--34957412	22	2.3	22	89	6	75	34	10	12	44	1.75
34958246--34958292	20	2.4	19	83	16	60	23	2	2	72	1.06
34958447--34958507	30	2.0	30	87	0	86	34	4	18	42	1.71
34963507--34963573	34	1.9	35	90	3	109	44	13	8	32	1.75
34967525--34967582	25	2.4	25	80	8	66	12	10	27	50	1.72
34972356--34972567	40	5.3	40	85	3	259	23	19	27	28	1.98
34978045--34978108	25	2.6	25	79	0	92	23	25	25	26	2.00
34982799--34982833	16	2.1	17	89	5	54	37	0	51	11	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34983985--34984039	29	2.0	27	82	13	67	61	10	12	14	1.56
34988091--34988130	19	2.1	19	85	0	53	80	5	5	10	1.02
34989549--34989656	44	2.5	44	80	6	112	28	20	20	30	1.97
34989676--34990472	51	15.9	51	79	5	746	27	23	18	30	1.97
34990218--34990404	92	2.0	93	86	1	259	25	24	18	32	1.97
34991675--34991814	48	2.9	47	78	7	138	11	21	20	46	1.82
34992246--34992307	7	8.6	7	81	8	54	8	0	11	80	0.90
34992240--34992335	27	3.6	26	80	13	106	8	1	11	79	0.99
34992241--34992318	19	4.3	19	78	16	85	7	0	12	79	0.93
34996752--34996785	16	2.1	16	94	0	59	47	20	11	20	1.81
34998260--34998310	23	2.2	24	79	10	61	54	5	3	35	1.43
34998318--34998372	27	2.1	25	83	12	67	60	1	7	30	1.35
34998526--34998599	21	3.5	20	75	21	62	56	8	8	27	1.56
35008270--35008304	16	2.1	17	89	5	54	37	0	51	11	1.38
35018131--35018353	119	1.9	120	84	6	301	25	27	22	24	2.00
35018129--35018353	40	5.7	40	84	6	287	25	28	22	24	2.00
35026269--35026493	40	5.7	40	87	5	314	25	28	22	24	2.00
35026271--35026493	119	1.9	120	85	6	319	25	27	22	24	2.00
35033723--35033801	6	12.8	6	80	7	61	69	3	3	22	1.21
35033720--35033800	25	3.3	25	84	1	101	70	3	3	22	1.19
35033735--35033801	19	3.6	19	77	2	73	71	1	4	22	1.12
35043965--35044488	27	19.6	26	80	8	440	42	20	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35043972--35044448	240	2.0	239	86	2	670	43	21	15	19	1.88
35068982--35069032	23	2.2	23	82	3	57	43	17	19	19	1.89
35077270--35077658	51	7.7	50	80	7	405	28	15	26	29	1.96
35080343--35080371	3	9.7	3	100	0	58	68	0	0	31	0.89
35086076--35086111	14	2.6	14	91	4	56	27	8	0	63	1.23
35100116--35100618	44	10.8	43	66	19	192	32	18	22	27	1.97
35100116--35100669	142	3.9	142	92	0	894	32	18	21	27	1.97
35100540--35100661	44	2.8	44	79	7	115	35	18	18	27	1.94
35102106--35102168	29	2.2	29	100	0	126	22	15	11	50	1.75
35104521--35104656	69	2.0	69	92	0	227	42	10	19	27	1.84
35106151--35106397	50	4.8	51	78	4	205	23	27	21	27	1.99
35108837--35108870	12	2.9	12	95	4	61	35	0	0	64	0.94
35116065--35116233	74	2.3	75	89	1	259	34	13	8	42	1.76
35121526--35121781	136	1.9	136	82	3	327	30	26	21	21	1.98
35125101--35125151	22	2.3	21	80	9	57	50	0	0	49	1.00
35128313--35128402	46	2.0	46	88	0	135	23	6	10	60	1.52
35131017--35131049	16	2.1	16	88	5	50	48	0	6	45	1.27
35132480--35132505	6	4.3	6	100	0	52	84	0	0	15	0.62
35134502--35134577	27	2.8	27	92	4	118	30	27	22	19	1.98
35134503--35134653	27	5.9	25	81	6	92	31	23	23	21	1.98
35134558--35134659	25	4.1	25	78	7	100	34	20	24	20	1.97
35142240--35142306	25	2.7	25	79	2	73	32	20	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35152201--35152246	21	2.2	21	92	0	74	17	13	32	36	1.88
35156400--35156461	28	2.2	28	85	5	81	45	9	14	30	1.77
35158392--35158445	24	2.3	23	78	12	56	11	16	3	68	1.33
35164045--35164100	20	3.1	18	83	16	64	25	0	1	73	0.93
35164058--35164109	14	3.6	15	79	7	63	21	0	1	76	0.87
35164084--35164117	17	1.9	18	88	5	52	14	0	5	79	0.91
35170707--35170784	17	4.3	17	73	22	61	74	1	0	24	0.89
35170706--35170749	6	7.5	6	80	14	56	81	2	0	15	0.78
35170706--35170783	23	3.5	22	74	11	77	75	1	0	23	0.87
35170749--35170773	9	2.8	9	100	0	50	60	0	0	40	0.97
35186773--35187077	40	7.4	40	72	7	254	28	22	22	26	1.99
35186809--35187116	42	7.5	42	73	8	283	28	23	21	26	1.99
35186765--35187121	82	4.3	82	97	1	653	28	22	22	26	1.99
35187394--35187506	43	2.7	41	79	8	122	28	27	23	21	1.99
35192698--35192725	12	2.3	12	100	0	56	0	14	7	78	0.95
35196054--35196365	105	3.0	105	96	1	565	31	30	19	18	1.96
35202828--35203324	43	11.9	40	68	13	212	28	20	22	28	1.98
35202829--35203441	43	14.5	42	67	12	202	28	21	22	27	1.99
35202814--35203441	127	5.0	127	89	2	949	29	21	21	27	1.99
35202831--35203441	83	7.2	84	68	12	284	28	21	22	27	1.99
35204118--35204200	41	2.0	41	100	0	166	28	4	21	44	1.73
35204750--35204809	3	19.7	3	74	16	52	33	1	3	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35204764--35204809	14	3.4	14	83	16	53	32	0	2	65	1.05
35205111--35205152	20	2.1	20	91	8	68	26	0	2	71	0.98
35205143--35205183	8	5.2	8	80	14	50	12	0	4	82	0.81
35205125--35205174	14	3.6	14	83	0	64	20	0	2	78	0.86
35205123--35205183	28	2.1	29	84	3	79	18	0	3	78	0.88
35210098--35210142	20	2.2	20	84	0	54	33	13	26	26	1.93
35211555--35211603	21	2.3	22	89	3	73	20	10	24	44	1.82
35217534--35217894	54	6.7	53	80	5	352	42	19	19	18	1.89
35217534--35217910	81	4.6	82	76	8	315	42	19	19	18	1.90
35217534--35217905	27	13.8	26	74	12	216	42	19	19	18	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207