genome.fa.s19.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  107  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32226806--32227026	109	2.0	109	100	0	442	31	12	19	36	1.90
32232727--32232752	13	2.0	13	100	0	52	53	0	15	30	1.42
32242099--32242220	23	5.3	23	83	3	165	31	25	19	22	1.98
32242099--32242220	46	2.7	46	92	0	190	31	25	19	22	1.98
32247885--32247947	21	3.0	21	88	2	81	31	31	6	30	1.83
32248262--32248297	13	2.8	13	91	0	63	77	0	11	11	0.99
32248264--32248300	12	3.0	12	92	7	65	72	0	10	16	1.10
32252756--32252818	21	3.0	21	88	2	81	33	31	4	30	1.78
32263952--32264170	108	2.0	108	97	0	411	35	12	13	38	1.83
32265950--32266005	28	2.0	28	96	0	103	46	8	7	37	1.63
32272322--32272368	23	2.1	22	92	4	76	31	17	25	25	1.97
32273132--32273163	16	1.9	17	93	6	57	46	0	25	28	1.53
32273132--32273176	17	2.6	16	86	10	54	48	0	28	22	1.50
32273438--32273484	23	2.1	22	92	4	76	31	17	25	25	1.97
32274248--32274279	16	1.9	17	93	6	57	46	0	25	28	1.53
32274248--32274292	17	2.6	16	86	10	54	48	0	28	22	1.50
32274645--32274681	9	4.1	9	89	0	56	32	10	10	45	1.74
32274732--32274771	9	4.4	9	93	0	71	40	22	12	25	1.89
32274773--32274920	72	2.0	73	93	1	253	23	18	13	44	1.85
32278453--32278499	22	2.0	24	84	8	62	36	8	2	53	1.44
32282773--32282887	60	1.9	60	96	0	212	52	13	10	24	1.71
32291612--32291780	43	4.0	42	78	6	164	30	24	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32295589--32295670	23	3.6	23	78	15	98	39	0	2	58	1.11
32295644--32295683	16	2.6	15	84	7	53	35	0	0	65	0.93
32295623--32295716	22	4.5	22	67	23	69	39	1	0	59	1.04
32295763--32295829	22	3.2	22	85	10	79	41	0	1	56	1.08
32295966--32296018	13	3.7	13	75	22	52	60	1	1	35	1.19
32295991--32296018	13	2.2	13	100	0	56	60	0	0	39	0.97
32300294--32300395	30	3.4	30	80	0	123	23	22	24	29	1.99
32302701--32302760	23	2.5	24	91	2	95	26	5	31	36	1.78
32306953--32307001	14	3.6	14	81	13	50	6	24	2	67	1.24
32306993--32307037	19	2.3	20	84	3	56	8	8	2	80	1.00
32309528--32309588	23	2.6	24	84	10	81	29	4	29	36	1.78
32312321--32312369	15	3.5	15	79	17	52	57	2	0	40	1.10
32312346--32312564	21	10.1	21	64	17	67	54	2	0	41	1.21
32312491--32312558	21	3.2	20	83	10	82	55	1	0	42	1.08
32312523--32312600	33	2.3	33	86	6	104	58	2	0	38	1.12
32312558--32312632	23	3.3	22	71	12	62	53	6	0	40	1.27
32312526--32312610	32	2.6	31	83	10	100	56	4	0	38	1.20
32312653--32312719	24	2.8	23	80	6	80	77	4	5	11	1.09
32314802--32314911	50	2.2	50	81	0	139	27	23	28	20	1.99
32315081--32315147	9	7.4	9	93	0	116	44	22	8	23	1.81
32315250--32315293	18	2.4	18	88	0	61	13	2	43	40	1.57
32319724--32319759	17	2.1	17	89	5	54	19	2	11	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32324409--32324442	16	2.1	16	100	0	68	11	17	11	58	1.62
32329106--32329148	21	2.0	21	86	8	61	34	0	6	58	1.25
32329164--32329213	20	2.4	22	93	6	86	48	2	2	48	1.24
32329176--32329214	10	3.9	10	82	0	51	46	0	0	53	1.00
32330161--32330200	20	2.0	21	85	5	55	42	0	0	57	0.98
32330480--32330545	28	2.4	28	97	0	123	40	10	0	48	1.38
32330538--32330571	17	2.0	17	88	0	50	79	8	2	8	1.03
32330601--32330677	27	2.9	27	88	0	109	25	20	29	23	1.99
32331257--32331340	18	4.7	18	75	10	73	34	13	1	51	1.48
32331249--32331333	35	2.4	37	88	8	138	37	12	1	48	1.50
32331411--32331575	82	2.0	82	97	0	312	39	6	9	44	1.62
32331656--32331721	19	3.5	19	79	4	89	50	1	10	37	1.47
32332106--32332139	16	2.1	16	89	10	52	0	2	11	85	0.71
32332140--32332199	26	2.3	27	97	2	113	50	0	8	41	1.33
32337901--32337931	3	10.3	3	100	0	62	67	32	0	0	0.91
32341542--32341605	13	4.9	13	84	0	92	25	7	25	42	1.81
32341833--32341882	20	2.6	20	81	6	59	56	0	2	42	1.11
32348533--32348565	12	2.7	12	95	4	57	78	0	6	15	0.93
32357354--32357382	12	2.3	13	94	5	51	68	0	0	31	0.89
32367738--32367799	6	10.7	6	72	17	51	66	12	6	14	1.44
32368189--32368214	13	2.0	13	100	0	52	69	0	15	15	1.20
32369443--32370037	87	6.8	87	91	0	947	30	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32370155--32370438	129	2.2	128	88	1	408	30	22	19	26	1.98
32370202--32370404	44	4.7	44	69	8	155	31	22	19	27	1.98
32370242--32370431	44	4.5	41	70	10	121	28	24	18	28	1.98
32381788--32381970	98	1.9	98	91	2	305	30	14	16	38	1.88
32384599--32384631	14	2.4	14	94	0	57	36	15	9	39	1.79
32386646--32386675	5	5.8	5	92	7	51	36	0	0	63	0.95
32386704--32386747	21	2.0	22	86	4	63	77	4	13	4	1.08
32388354--32388424	35	2.0	35	91	0	115	45	1	16	36	1.57
32390619--32390651	17	1.9	17	100	0	66	18	30	3	48	1.63
32393271--32393319	20	2.5	19	76	6	53	24	4	10	61	1.45
32393586--32393676	41	2.2	41	82	7	105	36	23	25	15	1.94
32393790--32394056	41	6.5	41	79	8	274	20	24	21	33	1.97
32394027--32394120	41	2.3	41	79	3	109	27	22	26	23	1.99
32395089--32395120	17	1.9	16	93	6	55	43	0	3	53	1.16
32395090--32395127	19	2.1	18	90	5	58	44	0	2	52	1.14
32395208--32395363	73	2.1	74	92	1	260	26	16	20	36	1.93
32397342--32397377	15	2.5	15	90	4	56	11	16	8	63	1.49
32397979--32398174	43	4.5	43	77	16	197	47	12	1	38	1.50
32398035--32398169	16	8.7	15	74	21	111	46	12	1	39	1.51
32397996--32398180	93	2.0	93	94	2	327	46	12	2	38	1.54
32398119--32398174	9	6.8	9	73	19	59	48	16	0	35	1.46
32398035--32398169	31	4.4	31	71	25	115	46	12	1	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32398111--32398197	40	2.2	40	76	15	92	52	13	1	32	1.48
32402093--32402130	17	2.2	18	85	4	51	63	2	23	10	1.39
32402112--32402166	12	4.6	12	73	15	51	63	0	23	12	1.29
32403523--32403554	4	8.0	4	100	0	64	25	0	0	75	0.81
32408479--32408625	66	2.2	66	87	4	208	40	18	27	13	1.88
32408608--32408665	21	2.8	21	89	0	89	34	17	43	5	1.71
32409067--32409446	43	8.8	43	93	0	616	21	20	31	26	1.98
32415480--32415536	29	2.0	29	82	6	71	31	3	31	33	1.75
32419313--32419395	41	2.0	41	97	0	157	25	20	18	36	1.95
32419310--32419409	41	2.7	35	78	16	119	25	21	18	36	1.95
32426947--32427038	33	2.7	34	80	6	80	27	23	15	33	1.95
32428224--32428281	29	2.0	28	80	9	64	46	18	0	34	1.50
32431573--32431613	8	4.9	8	85	11	55	56	0	0	43	0.99
32433730--32433835	41	2.5	43	83	6	119	33	29	16	20	1.94
32437788--32437840	20	2.5	23	82	14	69	35	0	0	64	0.94
32438378--32438410	14	2.3	15	89	5	50	36	51	0	12	1.39
32438911--32438959	15	3.3	15	82	8	64	46	30	0	22	1.52
32439296--32439405	40	2.8	40	92	2	186	24	24	22	28	2.00
32439425--32439603	93	1.9	93	87	2	261	21	21	22	34	1.97
32439534--32439642	39	2.8	39	87	2	148	22	25	25	26	2.00
32439672--32439759	40	2.2	40	93	0	149	21	26	23	28	1.99
32439672--32439776	40	2.6	40	86	4	140	23	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32440846--32440889	18	2.3	20	88	11	67	59	0	4	36	1.18
32441068--32441110	20	2.2	20	87	4	61	41	2	2	53	1.26
32442986--32443016	7	4.4	7	100	0	62	70	0	0	29	0.87
32446131--32446224	7	13.6	7	80	4	84	17	1	31	50	1.53
32453434--32453485	26	2.0	26	88	7	79	15	19	25	40	1.90
32453496--32453554	25	2.4	25	80	5	66	27	28	15	28	1.96
32453512--32453563	25	2.1	25	85	7	70	25	28	15	30	1.96
32454861--32454913	23	2.3	23	93	0	97	30	26	22	20	1.98
32455000--32455028	8	3.6	8	100	0	58	34	27	13	24	1.93
32461157--32461415	67	3.9	67	88	3	369	22	24	15	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207