genome.fa.s19.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  109  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32820957--32821200	50	4.9	50	83	1	267	28	22	27	21	1.99
32820793--32821101	167	1.9	166	86	2	449	26	22	30	20	1.98
32820722--32821157	217	2.0	216	97	1	820	27	22	28	21	1.99
32826638--32826797	80	2.0	80	96	2	295	34	21	15	29	1.93
32827566--32827622	24	2.4	24	81	0	60	43	21	15	19	1.87
32829765--32829804	17	2.4	17	87	8	55	2	20	2	75	1.04
32831557--32831677	7	15.9	7	67	26	52	41	3	3	52	1.34
32831653--32831759	49	2.3	46	80	13	123	42	2	3	50	1.34
32831710--32831753	23	1.9	23	81	9	54	38	4	2	54	1.33
32831850--32831882	16	2.0	16	94	5	57	48	0	0	51	1.00
32836763--32836787	12	2.1	12	100	0	50	44	8	8	40	1.63
32841524--32841567	18	2.5	17	82	7	52	29	0	2	68	1.02
32841551--32841592	21	2.0	22	85	4	59	50	0	0	50	1.00
32841564--32841617	19	2.8	19	80	5	56	44	0	1	53	1.11
32844066--32844347	100	2.8	100	86	2	402	36	20	10	32	1.87
32847039--32847090	27	1.9	27	84	7	70	36	3	11	48	1.58
32848987--32849763	388	2.0	388	99	0	1545	24	14	26	34	1.94
32850808--32850984	27	6.5	26	74	6	120	40	20	18	20	1.91
32850817--32850959	54	2.6	54	83	4	189	43	18	16	21	1.88
32854015--32854065	23	2.2	23	82	6	59	60	3	1	33	1.26
32856178--32856258	27	3.0	27	81	3	92	22	20	25	30	1.98
32865532--32865645	54	2.1	54	81	3	140	19	31	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32868684--32868754	26	2.7	26	89	4	99	22	26	22	28	1.99
32874287--32874457	50	3.3	51	82	4	175	26	21	28	23	1.99
32874334--32874471	50	2.8	50	81	4	170	27	20	29	22	1.98
32874730--32874768	20	2.0	20	90	10	62	56	5	23	15	1.59
32881963--32882104	50	2.9	48	85	3	149	27	23	28	21	1.99
32881979--32882156	50	3.6	49	79	11	152	28	21	28	21	1.99
32882358--32882396	20	2.0	20	90	10	62	56	5	23	15	1.59
32894542--32894589	19	2.7	18	76	20	55	52	4	2	41	1.32
32894558--32894643	37	2.3	38	82	9	97	52	5	3	38	1.43
32895049--32895088	19	2.1	19	86	9	55	32	2	5	60	1.32
32908752--32908792	21	2.0	21	90	0	64	29	21	2	46	1.64
32908944--32908994	19	2.6	20	78	6	59	29	1	1	66	1.13
32909939--32909971	7	4.7	7	100	0	66	27	0	15	57	1.38
32910940--32911068	59	2.1	61	88	5	192	34	4	7	52	1.51
32913200--32913225	3	8.7	3	100	0	52	0	34	0	65	0.93
32913624--32913698	35	2.1	35	97	0	141	25	16	30	28	1.96
32914150--32914221	25	2.9	25	77	8	74	23	23	0	52	1.47
32914289--32914943	123	5.4	125	81	8	665	28	16	16	39	1.90
32914650--32914877	112	2.1	107	83	5	278	28	17	15	38	1.90
32915026--32915086	28	2.2	29	88	5	90	45	18	0	36	1.49
32915041--32915166	33	4.4	28	75	14	105	38	14	0	46	1.50
32915068--32915134	33	2.0	33	91	0	107	43	10	0	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32915101--32915166	27	2.4	28	84	2	89	34	15	1	48	1.54
32918115--32918289	93	1.9	94	91	1	289	47	3	10	38	1.56
32918242--32918372	48	2.7	47	83	5	147	49	1	9	39	1.44
32918410--32918452	21	2.0	21	86	8	61	46	0	9	44	1.35
32919278--32919334	29	2.0	29	82	6	71	35	8	19	36	1.83
32934935--32934969	7	5.0	7	92	0	52	80	0	5	14	0.89
32934953--32934998	18	2.6	18	82	6	58	76	2	0	21	0.90
32935238--32935270	16	2.0	17	88	5	50	48	18	6	27	1.71
32938208--32938456	50	4.8	50	85	4	284	20	29	24	26	1.99
32938207--32938456	100	2.4	104	88	6	357	20	29	24	26	1.99
32938551--32938582	13	2.5	13	94	0	55	56	12	0	31	1.37
32938794--32938851	30	1.9	30	89	0	89	31	24	3	41	1.71
32945780--32946028	50	4.8	50	85	4	284	20	29	24	26	1.99
32945779--32946028	100	2.4	104	88	6	357	20	29	24	26	1.99
32946123--32946154	13	2.5	13	94	0	55	56	12	0	31	1.37
32946366--32946423	30	1.9	30	89	0	89	31	24	3	41	1.71
32951466--32951499	16	2.1	17	88	5	52	64	2	0	32	1.08
32957828--32957860	12	2.8	12	95	0	57	72	3	18	6	1.18
32959199--32959285	43	2.0	43	100	0	174	43	13	11	31	1.80
32959210--32959302	43	2.2	42	84	7	116	47	17	9	25	1.78
32959491--32959594	51	2.0	51	100	0	208	34	21	11	32	1.89
32962246--32962478	45	5.2	45	94	0	394	38	15	20	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32963253--32963388	68	2.0	68	100	0	272	48	11	14	25	1.78
32963759--32963827	26	2.7	26	84	4	86	24	21	27	26	1.99
32964782--32964815	13	2.6	13	100	0	68	35	17	0	47	1.48
32965217--32965259	5	8.8	5	97	2	79	41	0	16	41	1.48
32965219--32965268	10	4.1	12	74	23	50	40	2	18	40	1.62
32971745--32971780	18	2.0	18	89	10	56	44	0	22	33	1.53
32978765--32978801	13	2.6	14	91	8	58	83	0	16	0	0.64
32978845--32978884	21	1.9	21	89	0	62	45	5	30	20	1.72
32980684--32980725	22	2.0	21	90	4	66	35	0	11	52	1.38
32999023--32999077	21	2.7	21	78	15	71	61	5	0	32	1.19
33008868--33009078	84	2.5	84	92	0	350	36	24	15	23	1.94
33008826--33009078	42	6.0	42	77	8	244	35	24	16	23	1.95
33009078--33009224	49	2.9	50	82	6	165	30	29	17	22	1.96
33010471--33010562	25	3.7	25	74	18	84	26	21	22	29	1.99
33017242--33017292	24	2.1	24	85	3	66	27	21	23	27	1.99
33034220--33034287	25	2.7	25	95	0	127	22	27	29	20	1.98
33040308--33040354	19	2.5	19	75	6	51	42	6	0	51	1.27
33041133--33041196	31	2.1	31	96	0	119	45	15	18	20	1.86
33048460--33048569	56	2.0	56	94	0	193	22	26	16	34	1.95
33049396--33049476	42	1.9	42	87	0	117	19	29	23	27	1.98
33050168--33050457	40	7.3	40	84	1	359	33	16	28	21	1.95
33050168--33050457	120	2.4	120	83	2	395	33	16	28	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33052521--33052604	25	3.4	25	76	9	84	69	5	0	25	1.11
33052649--33052748	26	3.8	26	79	10	114	61	3	3	33	1.27
33056145--33056216	27	2.7	27	83	12	87	20	23	22	33	1.97
33056254--33056330	32	2.4	32	88	0	118	20	20	20	37	1.94
33056380--33056497	32	3.7	32	81	2	148	17	22	25	33	1.96
33056379--33056503	63	2.0	63	87	1	178	19	22	24	34	1.96
33056443--33056517	32	2.4	32	84	2	89	22	21	20	36	1.96
33057511--33057646	40	3.4	40	78	8	150	13	15	24	46	1.82
33073678--33073795	29	4.0	29	79	1	110	21	23	14	40	1.90
33074602--33074667	24	2.8	24	83	0	87	18	10	25	45	1.81
33080563--33080803	85	2.7	90	75	11	237	33	20	10	35	1.87
33080889--33080918	15	2.0	15	100	0	60	80	0	0	20	0.72
33080901--33081046	27	5.3	27	72	19	90	60	2	2	34	1.20
33080963--33081035	36	2.0	37	81	7	87	64	1	1	32	1.11
33081207--33081259	20	2.7	20	82	5	72	32	7	0	60	1.25
33103148--33103614	230	2.0	229	87	6	672	19	15	16	49	1.80
33104379--33104433	19	2.7	20	83	11	67	41	1	1	54	1.21
33105438--33105521	28	3.1	28	69	20	70	42	0	4	52	1.22
33105709--33105750	16	2.6	16	100	0	84	23	30	4	40	1.75
33107994--33108414	209	2.0	209	92	0	698	33	16	13	36	1.88
33115935--33115968	11	2.8	13	91	8	54	35	11	17	35	1.87
33117133--33117342	33	5.7	34	70	22	149	21	19	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33117129--33117341	75	2.8	76	90	4	340	21	18	27	32	1.97
33117930--33117971	9	4.7	9	100	0	84	47	9	9	33	1.68
33125299--33125352	25	2.2	25	86	0	72	16	18	18	46	1.85
33125437--33125578	76	1.9	76	88	2	214	43	18	11	26	1.84
33127275--33127299	12	2.1	12	100	0	50	32	16	36	16	1.90
33127975--33128133	30	5.4	28	72	10	77	37	13	27	22	1.92
33128001--33128192	30	6.4	30	75	6	131	39	14	26	20	1.90
33128031--33128202	90	1.9	90	81	2	211	36	14	26	22	1.93
33127999--33128192	60	3.2	60	69	6	160	39	13	25	21	1.90
33129298--33129406	42	2.6	42	86	0	119	21	19	36	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207