genome.fa.s19.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  80  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23272395--23272513	18	6.5	18	77	12	91	31	1	2	64	1.16
23278246--23278399	63	2.4	63	84	4	204	27	25	24	22	2.00
23278992--23279036	18	2.5	18	92	0	72	75	0	22	2	0.91
23281164--23281238	10	7.1	11	71	22	54	78	1	14	5	0.99
23281162--23281238	24	3.3	24	77	10	63	77	1	15	5	1.00
23286584--23286618	2	17.0	2	88	5	52	45	5	0	48	1.26
23293311--23293465	33	4.7	33	87	0	222	13	34	29	21	1.92
23296654--23296744	35	2.6	35	80	3	94	21	18	28	30	1.97
23299518--23299592	30	2.7	27	80	13	89	60	2	1	36	1.20
23299519--23299591	38	1.9	37	84	13	96	60	2	1	35	1.20
23299516--23299591	9	8.2	9	80	16	93	61	2	1	34	1.18
23300120--23300158	20	2.1	19	85	9	53	38	2	2	56	1.27
23300134--23300208	29	2.8	28	78	11	77	33	1	1	64	1.11
23300163--23300204	17	2.5	17	82	14	52	28	0	2	69	1.01
23300823--23300865	16	2.7	16	77	0	50	39	0	6	53	1.28
23319311--23319346	15	2.4	15	90	0	54	33	2	0	63	1.08
23324490--23324535	20	2.3	20	88	3	67	58	2	2	36	1.22
23324476--23324579	38	2.7	39	81	15	110	56	1	3	37	1.28
23331368--23331401	13	2.6	13	80	0	50	41	0	0	58	0.98
23334640--23334675	11	3.3	11	92	0	54	75	2	0	22	0.94
23335837--23335873	18	2.1	18	94	0	65	29	5	13	51	1.63
23336220--23336271	3	17.0	3	77	18	54	61	3	1	32	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23336220--23336274	11	4.8	11	78	13	58	61	3	1	32	1.24
23336238--23336275	14	2.8	14	84	4	51	63	5	2	28	1.30
23336224--23336284	22	3.1	19	76	19	54	60	4	3	31	1.34
23337748--23338050	100	3.0	100	91	0	464	24	24	22	29	1.99
23337772--23338045	50	5.5	50	67	3	192	23	25	22	28	1.99
23338945--23338978	16	2.1	16	100	0	68	17	23	5	52	1.66
23339634--23339704	14	4.7	15	81	14	76	14	1	9	74	1.13
23340479--23340544	25	2.6	25	85	9	80	57	6	16	19	1.60
23344639--23344709	11	6.8	10	73	23	58	59	2	4	33	1.31
23344655--23344706	3	17.0	3	77	18	54	61	3	1	32	1.25
23344639--23344730	22	4.2	21	77	15	73	58	4	4	32	1.37
23344653--23344709	8	6.8	8	78	21	55	61	3	1	33	1.23
23344655--23344706	14	3.9	13	82	12	54	61	3	1	32	1.25
23344670--23344706	14	2.6	14	91	0	56	62	5	2	29	1.31
23345929--23346005	31	2.5	31	81	4	95	36	11	11	40	1.78
23350258--23350567	43	7.2	43	86	1	415	30	31	18	20	1.96
23350953--23351028	37	2.1	37	100	0	152	43	13	18	25	1.86
23354263--23354653	142	2.8	141	88	5	542	33	10	15	40	1.82
23355632--23355718	40	2.2	40	77	4	95	36	40	1	21	1.61
23357626--23357744	62	1.9	62	83	10	154	59	1	6	31	1.33
23357677--23357739	33	1.9	33	83	0	81	58	1	9	30	1.39
23357736--23357843	9	11.6	9	68	19	53	64	3	2	28	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23357626--23357760	62	2.2	61	81	9	150	60	1	6	31	1.31
23357739--23357843	18	5.6	17	70	22	61	63	3	2	29	1.26
23357737--23357845	17	5.9	17	70	20	60	64	3	2	29	1.25
23366505--23366622	41	2.9	41	87	0	146	27	16	24	31	1.97
23366735--23366952	63	3.2	67	81	8	255	30	10	16	43	1.80
23366773--23366876	31	3.3	30	68	17	77	29	9	15	45	1.78
23373280--23373365	17	5.1	16	69	20	52	32	4	1	61	1.24
23373359--23373397	17	2.3	17	86	0	51	38	2	2	56	1.27
23373469--23373514	19	2.3	20	96	3	85	32	4	0	63	1.14
23374505--23374549	23	2.0	23	90	0	72	57	4	6	31	1.44
23374598--23374849	24	10.8	24	70	13	150	55	4	5	34	1.44
23374620--23374881	69	3.8	69	76	8	194	53	4	6	34	1.48
23374687--23374889	70	2.9	68	76	9	176	55	4	6	33	1.46
23375678--23375725	22	2.2	22	85	7	62	33	16	6	43	1.73
23376014--23376108	44	2.1	45	86	1	129	27	23	18	30	1.98
23376258--23376749	169	2.9	167	84	3	653	27	26	17	28	1.98
23376982--23377117	45	3.0	46	80	4	168	28	24	19	27	1.98
23377289--23377322	16	2.0	18	88	11	54	26	8	11	52	1.67
23378394--23378418	6	4.2	6	100	0	50	16	16	0	68	1.22
23381844--23381870	8	3.4	8	100	0	54	25	11	11	51	1.70
23382427--23382471	23	2.0	23	90	0	72	57	4	6	31	1.44
23382584--23382771	24	8.0	24	73	11	124	54	4	6	34	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23382609--23382802	70	2.8	68	76	8	167	54	5	6	34	1.48
23384572--23384623	20	2.6	20	73	11	52	44	9	13	32	1.76
23384768--23384814	21	2.2	22	78	17	55	17	0	17	65	1.27
23389211--23389282	36	2.0	36	84	10	94	38	4	4	52	1.40
23390488--23390580	32	2.9	32	98	0	177	51	18	3	26	1.61
23390489--23390607	32	4.0	27	89	7	78	52	18	3	26	1.61
23390486--23390625	59	2.3	62	81	8	171	52	18	2	26	1.59
23393743--23393795	17	3.4	17	72	20	60	54	18	11	15	1.70
23393738--23393796	30	2.0	30	93	0	100	54	18	11	15	1.71
23394382--23394475	8	11.2	8	70	16	66	68	4	0	27	1.08
23394392--23394475	27	3.0	27	75	18	73	69	3	0	27	1.05
23394387--23394443	19	3.0	19	82	7	80	70	5	0	24	1.08
23394394--23394454	19	3.6	17	75	20	56	70	3	0	26	1.02
23394413--23394473	30	2.0	32	83	6	81	67	3	0	29	1.07
23399147--23399252	18	5.5	19	72	18	76	32	0	7	60	1.25
23399204--23399252	9	5.1	9	78	11	53	30	0	8	61	1.25
23399147--23399248	30	3.5	28	74	18	93	31	0	6	61	1.22
23399263--23399316	17	2.9	19	79	20	69	33	0	3	62	1.12
23418065--23418089	13	1.9	13	100	0	50	28	8	8	56	1.57
23422628--23422677	25	2.0	25	100	0	100	40	8	16	36	1.77
23425342--23425380	21	1.9	20	94	5	69	25	23	25	25	2.00
23426197--23426287	28	3.2	28	77	7	94	47	17	13	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23428972--23429001	15	1.9	16	93	6	53	46	0	0	53	1.00
23438198--23438261	33	1.9	33	83	0	83	28	26	25	20	1.99
23438617--23438859	27	9.1	27	82	6	264	23	13	18	44	1.85
23438617--23438859	54	4.6	54	83	7	293	23	13	18	44	1.85
23439065--23439107	19	2.4	17	80	7	50	18	41	23	16	1.89
23441661--23441723	25	2.5	25	84	5	74	31	17	14	36	1.90
23442067--23442105	18	2.1	19	86	13	55	30	10	2	56	1.46
23444041--23444071	13	2.3	14	94	5	55	67	0	22	9	1.19
23448494--23448553	30	2.0	30	93	0	102	43	15	20	21	1.88
23449903--23449934	16	2.0	16	93	0	55	40	6	15	37	1.73
23452020--23452116	49	2.0	48	87	2	140	27	16	24	30	1.96
23453924--23454033	42	2.6	43	85	1	150	24	18	24	32	1.97
23453924--23454041	43	2.8	42	84	3	148	23	17	25	33	1.97
23460818--23460842	13	1.9	13	100	0	50	32	4	24	40	1.73
23461949--23462051	42	2.4	43	81	1	118	30	14	21	33	1.93
23461910--23462069	43	3.7	43	76	9	121	26	14	25	33	1.94
23469028--23469133	54	2.0	53	81	10	126	21	17	20	39	1.92
23469056--23469227	54	3.2	54	84	4	206	21	16	19	42	1.89
23469056--23469227	81	2.1	81	85	2	229	21	16	19	42	1.89
23469053--23469227	27	6.5	26	81	7	183	21	17	19	41	1.90
23472537--23472680	27	5.4	27	89	1	229	17	18	21	43	1.88
23478203--23478385	41	4.5	41	91	2	287	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23481450--23481529	41	2.0	40	90	7	126	20	18	8	52	1.71
23481589--23481722	70	1.9	70	87	3	198	30	20	23	25	1.99
23484695--23484789	37	2.6	37	88	5	131	18	10	30	40	1.85
23496852--23496876	6	4.2	6	100	0	50	32	0	68	0	0.90
23498727--23498761	18	1.9	18	88	11	54	54	34	2	8	1.46
23508154--23508276	44	2.8	43	79	8	131	37	0	34	28	1.58
23508198--23508266	19	3.3	19	71	21	57	39	0	31	28	1.57
23509863--23509904	20	2.1	20	95	0	75	47	0	7	45	1.30
23509931--23509982	3	17.0	3	76	11	52	30	5	1	61	1.30
23514172--23514250	37	2.1	37	88	4	115	25	30	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207