genome.fa.s19.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  127  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38893594--38893631	20	1.9	20	88	0	58	10	28	15	44	1.80
38893588--38893638	20	2.5	20	72	12	50	11	31	17	39	1.86
38895175--38895222	15	3.3	14	80	8	51	52	12	0	35	1.40
38900358--38900533	50	3.5	49	71	6	138	21	17	24	36	1.94
38900354--38900632	100	2.9	98	78	6	275	21	18	25	34	1.96
38900674--38900781	44	2.6	41	73	10	101	30	21	17	30	1.96
38900763--38900986	44	4.9	44	70	19	136	26	18	20	34	1.95
38900701--38901128	142	3.0	142	90	1	655	26	20	17	35	1.95
38901035--38901157	44	2.8	43	79	9	124	28	22	17	31	1.96
38903516--38903553	6	6.3	6	90	0	58	15	0	15	68	1.22
38911373--38911717	27	12.8	27	79	6	351	43	17	14	25	1.86
38911942--38912009	26	2.6	26	80	0	91	17	17	25	39	1.91
38912117--38912198	30	2.8	29	87	3	103	21	26	20	30	1.98
38912117--38912211	30	3.2	30	79	2	95	22	25	20	32	1.97
38916755--38916830	36	2.1	36	79	16	86	32	2	46	18	1.63
38917865--38918209	27	12.8	27	77	9	294	42	19	15	22	1.89
38917864--38918209	54	6.4	54	78	8	339	42	19	15	22	1.89
38917865--38918209	81	4.3	81	79	7	387	42	19	15	22	1.89
38918419--38918473	26	2.1	26	86	0	74	21	21	21	34	1.97
38918568--38918651	30	2.9	29	85	3	98	22	22	20	34	1.97
38918597--38918675	30	2.6	30	81	0	86	22	24	22	30	1.99
38922677--38922716	19	2.0	21	85	9	57	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38922711--38922752	12	3.7	12	75	12	52	30	0	0	69	0.89
38922717--38922762	10	4.4	10	84	10	56	30	0	0	69	0.89
38928911--38929025	46	2.5	46	94	0	194	40	22	19	17	1.91
38929229--38929471	27	9.0	27	80	5	233	22	15	17	44	1.86
38935027--38935057	16	2.0	15	93	6	53	38	32	16	12	1.86
38935025--38935117	38	2.4	38	82	3	116	39	29	17	13	1.88
38935091--38935139	22	2.2	22	88	0	71	44	28	14	12	1.81
38935048--38935160	60	1.9	60	87	3	165	43	25	16	14	1.86
38939466--38939521	27	2.0	28	96	3	105	10	10	19	58	1.60
38939469--38939528	27	2.1	28	90	6	95	11	11	18	58	1.63
38940414--38940651	44	5.2	44	71	13	174	26	21	19	33	1.97
38940377--38940646	142	1.9	142	93	0	468	26	20	18	34	1.96
38941071--38941104	16	2.1	16	100	0	68	14	23	17	44	1.86
38944850--38945072	40	5.6	39	83	5	232	24	20	28	26	1.99
38944925--38945107	79	2.3	80	81	1	217	25	20	28	25	1.99
38952708--38952925	40	5.6	39	73	16	148	26	19	27	27	1.99
38960236--38960281	19	2.4	19	85	7	58	41	10	23	23	1.86
38962847--38962925	37	2.1	37	90	0	122	25	31	18	24	1.98
38963043--38963200	49	3.2	48	95	2	273	31	30	7	31	1.85
38967046--38967145	50	2.0	50	98	0	191	42	12	9	37	1.74
38968977--38969048	36	2.0	36	97	0	135	50	6	8	34	1.60
38976962--38977101	75	1.9	76	86	1	201	36	25	20	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38977080--38977124	16	2.8	16	96	0	81	31	28	26	13	1.94
38976962--38977108	38	3.9	38	87	1	197	36	25	21	17	1.94
38979844--38979911	25	2.7	25	83	0	82	30	26	17	25	1.97
38979830--38979923	25	3.8	25	70	16	68	30	23	20	25	1.98
38982254--38982297	22	2.0	22	100	0	88	40	13	9	36	1.76
38986892--38986972	23	3.5	23	64	21	60	43	1	20	34	1.60
38986876--38986970	47	2.0	47	100	0	190	45	2	16	35	1.60
38986973--38987020	24	2.0	24	100	0	96	33	16	0	50	1.46
38989242--38989300	20	2.9	21	77	10	68	38	1	5	54	1.33
38989946--38989994	25	1.9	26	88	12	75	53	10	4	32	1.54
38994535--38994576	21	2.0	21	81	9	50	45	2	4	47	1.36
38997138--38997280	74	1.9	74	87	2	207	37	30	15	16	1.90
38997122--38997284	37	4.4	37	75	11	120	38	30	14	16	1.88
38998832--38999158	145	2.3	144	86	0	447	31	22	20	25	1.98
39000185--39000223	14	2.7	15	92	4	62	46	5	0	48	1.24
39000621--39000650	13	2.2	14	94	5	53	26	0	16	56	1.40
39011542--39011659	56	2.1	56	82	3	139	26	25	26	22	2.00
39012528--39012632	50	2.1	50	82	3	122	37	17	24	20	1.94
39012543--39012632	25	3.6	25	76	8	85	37	17	22	22	1.94
39012774--39012826	20	2.5	22	77	20	60	47	11	5	35	1.63
39015658--39015705	21	2.3	21	96	0	87	16	10	20	52	1.73
39021264--39021363	27	3.6	27	80	9	105	29	29	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39029279--39029377	28	3.5	29	81	12	107	29	28	15	27	1.96
39032440--39032521	23	3.7	23	75	14	82	48	20	13	17	1.80
39038288--39038365	26	3.2	26	70	15	76	41	26	11	20	1.87
39038288--39038387	47	2.1	46	85	10	132	40	26	12	22	1.88
39038358--39038397	21	1.9	21	84	0	53	40	25	12	22	1.89
39067370--39067486	62	1.9	59	81	5	135	41	4	5	48	1.45
39070194--39070232	20	2.0	20	89	0	60	17	20	0	61	1.34
39070446--39070684	50	4.7	50	76	5	189	23	27	20	28	1.99
39073734--39073975	38	6.4	38	73	10	201	40	17	11	30	1.86
39077708--39077766	29	2.0	29	90	0	91	33	18	18	28	1.95
39077738--39077989	38	6.6	38	76	7	183	38	20	14	26	1.91
39077749--39077956	114	1.8	114	88	0	317	37	21	14	25	1.92
39078627--39078695	21	3.2	21	62	22	52	21	2	21	53	1.59
39078604--39078704	44	2.3	44	96	0	184	19	1	24	53	1.56
39089812--39089851	16	2.4	17	79	4	55	77	0	10	12	0.99
39093672--39093705	2	17.0	2	87	0	50	44	0	2	52	1.16
39093916--39093946	15	2.1	15	93	0	53	12	3	3	80	0.95
39095843--39095885	19	2.3	19	84	8	52	25	27	11	34	1.91
39099543--39099591	25	2.0	25	91	0	80	26	30	6	36	1.81
39104257--39104287	15	2.1	15	100	0	62	51	19	12	16	1.76
39107979--39108019	21	2.0	20	85	4	55	48	7	7	36	1.59
39109382--39109407	11	2.4	11	100	0	52	38	23	7	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39113609--39113661	23	2.3	23	83	3	61	32	0	1	66	1.03
39115690--39115733	24	1.9	24	90	9	74	61	2	0	36	1.09
39117921--39118035	27	4.2	28	85	5	164	32	21	22	23	1.98
39118391--39118545	27	5.7	27	86	0	193	17	18	21	41	1.90
39118923--39118986	28	2.3	28	91	2	112	35	21	18	23	1.95
39119340--39119496	27	5.8	27	89	0	224	17	17	22	42	1.89
39117969--39119871	951	2.0	951	98	0	3698	32	23	14	29	1.94
39120796--39120857	20	3.1	20	75	9	72	37	24	29	9	1.87
39120763--39120884	40	3.1	38	84	6	154	36	22	26	14	1.93
39122287--39122322	18	1.9	19	94	5	65	33	16	5	44	1.71
39122724--39122829	40	2.7	40	96	0	194	29	14	26	30	1.95
39138940--39139483	9	59.1	9	69	15	235	45	18	1	34	1.59
39138897--39139390	29	17.8	27	68	17	117	46	18	1	33	1.60
39139085--39139215	47	2.7	47	87	4	174	48	19	0	31	1.55
39139063--39139494	165	2.6	163	89	5	633	45	18	1	34	1.57
39139198--39139378	47	3.7	47	81	8	188	44	20	1	33	1.62
39139076--39139483	9	45.0	9	72	14	236	46	19	0	33	1.57
39142126--39142238	21	5.4	21	81	4	129	41	16	39	1	1.59
39142512--39142821	42	7.3	42	80	5	277	26	17	23	32	1.96
39142512--39142817	84	3.6	84	82	4	330	26	17	23	32	1.97
39143268--39143350	9	9.2	9	84	5	105	30	10	18	40	1.84
39150683--39150770	28	3.1	28	73	9	70	40	10	3	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39150855--39150930	27	2.8	27	75	18	77	32	6	2	57	1.38
39151003--39151091	3	29.7	3	100	0	178	33	0	0	66	0.92
39151196--39151245	20	2.4	21	83	12	68	28	16	2	54	1.53
39152261--39152314	26	2.0	27	92	3	92	38	7	14	38	1.75
39154717--39154759	6	7.2	6	86	0	50	34	0	9	55	1.32
39155116--39155207	39	2.4	39	82	10	102	19	22	30	27	1.98
39157360--39157432	29	2.7	26	74	19	69	57	1	2	38	1.22
39157412--39157454	21	2.0	21	90	0	68	62	0	2	34	1.08
39157490--39157569	21	4.0	21	77	11	69	61	2	1	35	1.18
39157529--39157564	17	2.1	18	89	5	56	66	2	0	30	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207