genome.fa.s19.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  34  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9705257--9705341	46	1.9	43	85	7	116	25	16	24	32	1.96
9705475--9705506	16	2.0	16	93	0	55	59	0	15	25	1.36
9708818--9708868	16	3.2	16	75	10	59	33	0	11	54	1.37
9710493--9710824	27	12.3	26	80	6	287	44	20	15	19	1.87
9710516--9710821	107	2.9	107	81	8	311	44	20	16	19	1.87
9711154--9711230	28	2.8	28	95	0	136	24	20	23	31	1.98
9712423--9712459	19	2.0	20	89	10	60	35	10	2	51	1.51
9712588--9712645	20	3.1	19	73	19	59	44	17	13	24	1.85
9712983--9713016	15	2.3	15	89	0	50	32	14	8	44	1.76
9714746--9714788	17	2.5	17	85	11	52	53	13	2	30	1.53
9727711--9727813	42	2.5	42	82	3	109	17	21	17	43	1.88
9750961--9750997	18	2.0	19	89	5	58	40	8	5	45	1.56
9754886--9754910	2	12.5	2	100	0	50	52	0	0	48	1.00
9789888--9789938	22	2.3	22	89	0	75	33	15	15	35	1.90
9797297--9797454	27	5.9	27	84	3	201	39	19	17	22	1.92
9797859--9798039	28	6.5	28	88	3	267	23	25	23	27	2.00
9827271--9827303	14	2.3	15	89	5	50	60	9	0	30	1.27
9828253--9828496	27	9.0	27	80	5	197	18	18	19	43	1.88
9828253--9828496	54	4.5	54	85	3	276	18	18	19	43	1.88
9828253--9828496	81	3.0	80	80	7	260	18	18	19	43	1.88
9831760--9831786	12	2.2	12	100	0	54	7	22	40	29	1.81
9833940--9833996	26	2.2	26	90	3	89	24	19	12	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9845465--9845633	84	2.0	84	97	0	320	43	10	12	33	1.77
9848489--9848553	20	3.2	20	65	8	51	23	36	13	26	1.92
9848453--9848577	40	3.1	40	85	0	160	24	30	15	29	1.95
9861002--9861045	23	1.9	23	81	9	54	45	22	2	29	1.65
9864702--9864971	41	6.6	41	78	3	274	20	28	16	34	1.95
9864702--9864972	123	2.2	123	80	5	323	21	28	16	33	1.95
9865930--9865968	11	3.6	11	79	6	53	61	2	10	25	1.41
9865930--9865971	21	2.0	21	100	0	84	61	4	9	23	1.45
9866888--9866974	21	4.1	21	80	0	84	14	22	19	42	1.88
9872928--9872982	27	2.0	27	100	0	110	41	10	29	18	1.84
9886445--9886480	19	2.0	17	89	10	54	75	0	2	22	0.94
9886447--9886498	23	2.2	24	86	10	72	78	0	3	17	0.89
9886444--9886500	17	3.4	17	79	13	64	78	0	3	17	0.88
9889391--9889428	16	2.3	17	86	4	51	60	13	0	26	1.33
9894968--9895009	19	2.3	19	91	4	68	26	19	33	21	1.97
9898541--9898611	36	2.0	36	88	0	106	36	8	23	30	1.85
9903745--9903782	12	3.1	12	88	7	58	13	15	2	68	1.32
9903747--9903782	13	2.8	13	91	4	56	11	16	2	69	1.29
9909652--9909688	19	1.9	19	88	0	56	70	2	2	24	1.14
9910783--9910833	4	12.8	4	100	0	102	25	0	23	50	1.49
9913622--9913658	18	2.0	19	89	5	58	0	21	16	62	1.33
9937295--9937335	6	6.7	6	85	2	55	14	29	2	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9939784--9939872	45	2.0	45	95	0	160	32	24	17	24	1.97
9942737--9942818	42	2.0	42	80	9	96	32	20	13	32	1.91
9945362--9945461	50	2.0	49	90	1	155	29	29	18	24	1.98
9947414--9947473	30	2.0	30	83	3	75	41	0	38	20	1.52
9947553--9947612	30	2.0	30	90	0	93	35	0	45	20	1.51
9947751--9947781	9	3.4	9	90	0	53	38	22	12	25	1.90
9948510--9948550	5	8.4	5	94	5	75	36	0	21	41	1.54
9958700--9958751	7	6.8	8	77	14	56	26	0	0	73	0.84
9958699--9958740	7	5.9	7	83	5	57	28	0	0	71	0.86
9960190--9960221	16	2.0	16	100	0	64	25	31	6	37	1.81
9965893--9965941	19	2.5	20	77	12	57	36	20	0	42	1.52
9966110--9966214	45	2.3	44	80	7	131	39	17	19	24	1.92
9968866--9968930	25	2.6	25	87	0	103	38	18	18	24	1.93
9971039--9971080	18	2.3	19	83	4	50	40	16	21	21	1.91
9971060--9971160	45	2.3	45	86	5	143	40	17	17	23	1.91
9988312--9988552	116	2.1	116	92	0	401	25	29	23	21	1.99
9992135--9992405	147	1.8	148	84	0	373	29	19	15	35	1.93
9999904--10000115	42	4.9	42	77	8	178	33	16	19	30	1.94
10000023--10000111	47	1.9	46	86	6	126	30	19	19	31	1.96
10000959--10001035	30	2.7	28	88	7	127	31	23	23	22	1.99
10000995--10001130	72	1.9	72	98	0	263	22	19	24	33	1.97
10005925--10006041	57	2.1	57	82	6	139	28	18	5	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10006030--10006059	8	3.8	8	90	0	51	16	33	0	50	1.46
10007514--10007539	12	2.2	12	100	0	52	7	0	7	84	0.77
10025023--10025049	6	4.5	6	100	0	54	48	0	0	51	1.00
10026552--10026596	9	5.3	9	84	7	51	15	0	28	55	1.41
10027925--10027964	16	2.5	16	91	0	62	47	2	7	42	1.45
10027931--10028055	66	2.0	66	84	13	174	40	4	8	47	1.52
10027953--10028098	75	2.1	68	85	11	188	40	5	8	45	1.57
10028034--10028072	16	2.4	16	91	0	60	35	0	7	56	1.28
10028103--10028147	18	2.5	18	100	0	90	31	4	6	57	1.44
10028103--10028155	18	3.1	17	91	5	63	37	5	5	50	1.50
10028327--10028393	20	3.4	20	93	2	109	68	5	4	20	1.29
10028437--10028477	20	2.0	20	90	0	64	65	4	7	21	1.37
10028425--10028528	51	2.1	49	86	12	142	53	9	14	22	1.69
10028554--10028586	16	2.1	16	100	0	66	69	12	0	18	1.18
10030721--10030801	29	2.7	29	80	5	90	46	16	7	29	1.73
10031346--10031379	18	1.9	18	88	5	52	38	2	8	50	1.49
10032654--10032685	16	1.9	17	93	6	57	15	0	34	50	1.45
10034415--10034469	26	2.2	26	83	3	67	23	0	9	67	1.19
10034427--10034474	24	2.0	24	88	12	71	25	0	12	62	1.30
10035512--10035566	25	2.2	25	81	12	60	49	5	1	43	1.36
10037204--10037235	15	2.1	15	94	0	55	68	9	6	15	1.36
10037558--10037619	30	2.1	30	96	0	115	24	3	14	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10045917--10046072	43	3.7	42	73	8	118	23	17	21	38	1.93
10052169--10052208	8	5.2	8	82	11	57	12	0	25	62	1.30
10054696--10054722	11	2.5	11	100	0	54	22	7	18	51	1.70
10056132--10056339	91	2.3	91	91	0	326	45	3	3	47	1.37
10056254--10056314	28	2.2	28	85	5	81	45	0	3	50	1.17
10056172--10056358	47	4.1	43	71	18	121	45	2	3	48	1.32
10056366--10056674	66	5.2	57	66	20	184	41	2	4	50	1.38
10056355--10056767	120	3.4	120	97	0	765	42	2	5	50	1.37
10056428--10056735	61	5.1	61	68	17	257	42	1	6	49	1.39
10056480--10056531	15	3.6	15	80	12	56	44	0	1	53	1.11
10056600--10056651	15	3.6	15	80	12	56	44	0	1	53	1.11
10056729--10056770	15	2.7	16	82	14	52	45	0	2	52	1.13
10056720--10056761	15	2.9	15	82	10	52	47	0	0	52	1.00
10056896--10057005	45	2.6	43	79	13	122	32	28	4	34	1.77
10056984--10057029	16	2.9	16	93	0	74	26	30	2	41	1.68
10056982--10057035	16	3.4	16	78	19	67	25	29	1	42	1.66
10057390--10057434	18	2.5	18	86	10	65	44	0	2	53	1.13
10057413--10057466	28	2.0	27	85	10	74	44	0	1	53	1.11
10059372--10059443	37	1.9	37	97	0	135	41	15	4	38	1.66
10061946--10061998	3	17.7	3	76	7	54	60	3	5	30	1.37
10070084--10070160	35	2.2	37	86	9	115	29	3	14	51	1.59
10071412--10071488	33	2.4	32	78	4	82	44	18	11	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10075053--10075389	182	1.9	182	85	1	469	28	18	23	29	1.98
10081576--10081601	12	2.2	12	100	0	52	38	0	15	46	1.46
10083074--10083124	26	1.9	26	84	11	68	21	11	9	56	1.63
10084528--10084580	24	2.2	24	90	6	81	52	7	1	37	1.41
10085479--10085563	44	1.9	44	92	0	143	48	5	10	35	1.62
10092211--10092265	25	2.2	23	78	15	56	54	7	3	34	1.46
10093974--10094092	44	2.7	43	76	5	123	29	23	18	28	1.98
10097084--10097156	26	2.8	26	81	6	87	17	23	20	38	1.93
10097082--10097222	26	5.6	25	66	16	78	20	19	21	38	1.94
10097790--10097826	16	2.3	16	95	0	65	18	13	37	29	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207