genome.fa.s19.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  142  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43531445--43531513	30	2.2	32	87	5	106	60	0	5	33	1.20
43531497--43531548	17	3.0	17	72	25	54	63	1	9	25	1.35
43531584--43531637	10	5.4	10	75	20	51	55	1	5	37	1.34
43537149--43537187	5	7.6	5	94	5	69	79	0	20	0	0.73
43540395--43540496	43	2.4	43	84	0	132	34	8	11	45	1.72
43540435--43540552	56	2.2	56	81	4	134	33	7	13	44	1.72
43540494--43540616	43	2.9	43	82	0	156	30	10	11	47	1.73
43540390--43540595	99	2.1	99	92	0	340	33	8	12	45	1.73
43540914--43540998	9	8.8	9	73	23	66	38	1	1	58	1.13
43540916--43540989	11	7.3	10	71	19	55	37	1	1	59	1.14
43540911--43541106	20	9.9	19	74	13	130	37	1	1	59	1.16
43540945--43541086	38	3.7	36	77	13	115	35	2	1	61	1.17
43541009--43541106	10	9.7	10	75	16	51	34	1	1	63	1.08
43540945--43541108	39	4.2	37	76	14	111	36	1	1	60	1.15
43541021--43541118	40	2.4	40	83	5	108	38	0	1	60	1.04
43541043--43541106	31	2.1	30	85	8	85	39	0	0	60	0.97
43548211--43548585	185	2.0	186	95	0	671	24	21	13	40	1.90
43548868--43548929	32	1.9	32	93	0	106	30	27	12	29	1.93
43549146--43549251	53	2.0	53	88	0	158	27	27	12	33	1.92
43549271--43549644	202	1.9	202	97	0	703	27	27	14	31	1.95
43554187--43554425	51	4.7	51	79	2	248	38	17	8	36	1.80
43561223--43561285	30	2.1	30	96	0	117	57	15	3	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43576825--43576849	12	2.1	12	100	0	50	8	16	36	40	1.77
43577615--43577676	31	2.0	31	100	0	124	41	16	9	32	1.80
43578658--43579218	296	1.9	296	85	1	775	24	24	18	32	1.97
43585756--43586002	101	2.5	99	81	2	278	27	16	27	29	1.97
43585752--43585942	51	3.8	50	77	2	202	24	16	28	29	1.97
43589591--43589725	40	3.4	40	82	2	155	41	28	17	13	1.86
43589601--43589719	39	3.0	39	86	1	148	38	28	17	15	1.90
43590657--43590681	10	2.5	10	100	0	50	24	0	8	68	1.16
43608982--43609038	30	1.9	30	100	0	114	33	14	15	36	1.88
43614003--43614058	26	2.1	27	87	9	80	19	17	0	62	1.33
43614781--43614809	14	2.0	15	93	6	51	17	20	0	62	1.33
43616067--43616103	13	3.2	12	85	14	51	51	0	2	45	1.15
43620502--43620532	16	1.9	16	93	0	53	41	9	3	45	1.53
43621487--43621528	21	2.0	20	86	9	57	73	0	4	21	1.01
43621725--43621769	20	2.3	20	88	3	74	77	4	11	6	1.09
43631320--43631356	19	1.9	19	94	0	65	48	0	21	29	1.50
43632486--43632518	15	2.2	15	94	0	57	39	9	15	36	1.79
43633911--43633947	19	1.9	19	94	0	65	51	0	18	29	1.47
43642291--43642316	10	2.6	10	100	0	52	61	38	0	0	0.96
43646757--43646856	42	2.4	42	93	3	166	54	7	11	28	1.61
43646780--43646870	42	2.1	42	84	6	112	60	5	6	27	1.44
43646808--43647035	113	2.0	113	100	0	456	55	11	7	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43651497--43651723	120	1.9	121	84	4	307	40	28	2	28	1.68
43652152--43652260	41	2.7	41	91	1	184	30	24	22	22	1.99
43657711--43657765	21	2.6	21	82	0	65	27	3	30	38	1.74
43659851--43659919	35	2.0	35	88	5	104	31	7	17	43	1.76
43661749--43661796	10	4.5	10	78	14	51	66	14	8	10	1.43
43665775--43665812	18	2.1	18	100	0	76	36	21	18	23	1.95
43668978--43669162	40	4.7	40	80	5	178	26	27	20	25	1.99
43676833--43677015	40	4.6	39	82	4	197	25	27	21	25	1.99
43676947--43677024	40	1.9	41	82	10	97	26	28	21	23	1.99
43679615--43679640	13	2.0	13	100	0	52	38	23	7	30	1.83
43687059--43687154	45	2.2	44	88	5	140	30	4	28	37	1.76
43687296--43687930	120	5.3	120	92	1	1019	51	5	1	42	1.32
43687556--43687710	18	9.0	17	67	22	83	54	2	0	42	1.19
43687779--43687823	16	2.8	16	80	16	56	60	0	2	37	1.09
43687794--43687831	18	2.2	17	90	4	58	63	0	2	34	1.09
43687816--43687997	102	1.8	102	90	3	298	48	5	2	42	1.40
43692700--43693161	47	9.7	47	91	2	664	33	9	30	27	1.88
43695700--43695741	6	7.2	6	91	5	50	66	19	9	4	1.38
43695708--43695741	17	2.0	17	88	0	50	70	17	5	5	1.28
43695802--43695829	14	2.0	14	100	0	56	64	0	28	7	1.20
43704400--43704434	16	2.1	17	89	5	54	45	0	11	42	1.40
43705783--43705877	50	1.9	50	88	0	145	30	29	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43707471--43707861	50	7.8	50	83	4	452	21	31	20	26	1.98
43707471--43707861	150	2.6	150	86	1	532	21	31	20	26	1.98
43707471--43707861	100	3.9	100	86	1	507	21	31	20	26	1.98
43711097--43711290	50	3.9	50	86	0	271	22	29	21	25	1.99
43711628--43711685	30	1.9	30	82	6	73	31	22	8	37	1.84
43711798--43713207	738	1.9	734	83	5	1851	35	18	11	34	1.88
43715728--43715925	48	4.1	48	88	0	261	21	27	22	28	1.99
43718919--43719000	42	2.0	42	82	4	103	30	24	13	31	1.93
43721281--43721478	48	4.1	48	86	0	252	22	27	21	28	1.99
43722698--43722870	41	4.2	41	77	5	179	35	13	28	22	1.93
43731457--43731644	41	4.6	41	89	0	259	23	23	20	32	1.98
43739099--43739249	41	3.7	41	90	3	232	23	25	21	30	1.99
43739291--43739341	19	2.6	20	71	3	50	33	21	0	45	1.52
43748048--43748086	11	3.6	11	86	6	53	25	10	38	25	1.87
43762413--43762471	20	3.0	19	80	9	66	52	3	1	42	1.28
43762439--43762470	5	6.2	5	96	3	55	56	0	0	43	0.99
43762450--43762564	58	1.9	57	82	6	140	41	3	3	51	1.36
43775587--43775623	18	2.1	18	94	0	65	21	18	0	59	1.38
43775706--43775738	10	3.3	10	87	12	50	21	21	0	57	1.41
43776399--43776457	26	2.3	25	91	2	91	30	16	10	42	1.82
43776399--43776459	25	2.4	26	91	2	97	31	16	11	40	1.84
43788003--43788051	22	2.2	22	88	0	71	26	22	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43791016--43791250	119	2.0	119	95	0	425	29	11	20	38	1.87
43793398--43793581	59	3.1	58	80	5	208	40	12	17	29	1.87
43793429--43793601	59	2.9	58	83	1	202	41	12	17	28	1.86
43798395--43798449	20	2.8	19	75	8	56	41	1	1	54	1.21
43799150--43799212	30	2.1	30	90	0	99	23	3	14	58	1.50
43813409--43813459	22	2.3	22	83	12	61	29	15	9	45	1.79
43813849--43814230	190	2.0	190	92	0	629	28	9	24	36	1.88
43824324--43824375	22	2.3	22	83	3	59	13	17	25	44	1.85
43824334--43824396	22	3.0	22	83	6	76	9	17	28	44	1.80
43824345--43824410	20	3.2	21	87	8	91	10	19	27	42	1.84
43824407--43824473	25	2.7	25	78	0	71	20	13	20	44	1.85
43842737--43842797	9	6.5	10	92	3	67	26	1	0	72	0.94
43842751--43842799	3	16.3	3	95	0	89	30	0	0	69	0.89
43843197--43843244	21	2.5	20	75	24	50	22	0	12	64	1.27
43843212--43843257	22	2.1	22	84	8	58	19	0	8	71	1.11
43850854--43850891	18	2.2	18	90	4	60	39	18	18	23	1.92
43853517--43853803	50	5.8	50	82	6	334	27	19	32	20	1.97
43853521--43853799	97	2.8	98	82	6	312	27	19	32	20	1.97
43853517--43853845	147	2.2	148	90	1	500	27	20	31	20	1.98
43859073--43859097	8	3.1	8	100	0	50	36	0	12	52	1.39
43860561--43860606	22	2.0	23	83	4	58	50	4	13	32	1.61
43860768--43860809	20	2.1	20	86	0	57	26	0	30	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43865769--43865793	13	1.9	13	100	0	50	12	8	8	72	1.29
43869942--43869993	24	2.2	24	89	0	77	55	9	1	32	1.43
43870143--43870180	18	2.1	18	90	0	58	21	5	34	39	1.76
43875201--43875225	8	3.1	8	100	0	50	24	0	0	76	0.80
43875631--43875663	11	3.1	11	82	8	50	60	0	30	9	1.27
43877822--43878006	101	1.8	102	91	3	311	25	18	26	29	1.98
43877819--43878004	51	3.7	49	80	7	205	25	18	26	29	1.98
43878856--43878956	49	2.1	49	83	3	123	25	14	28	30	1.95
43880373--43880397	8	3.1	8	100	0	50	24	0	0	76	0.80
43881446--43881485	19	2.2	19	90	4	64	37	7	15	40	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207