genome.fa.s19.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  54  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15804937--15805101	43	3.8	42	73	12	138	24	16	26	31	1.97
15816728--15817152	78	5.5	78	87	6	559	38	4	13	43	1.65
15817223--15817414	78	2.5	76	81	6	217	36	3	18	40	1.69
15817748--15818110	41	8.8	41	85	1	449	28	20	27	23	1.99
15818279--15818392	34	3.3	34	79	8	104	33	7	17	41	1.79
15821307--15821380	24	3.1	24	76	7	71	48	1	31	18	1.57
15821999--15822038	14	2.6	16	92	7	66	30	0	15	55	1.41
15822983--15823018	5	7.2	5	100	0	72	80	0	0	19	0.71
15825104--15825136	17	1.9	18	88	11	52	42	12	0	45	1.41
15825199--15825257	5	11.6	5	73	22	52	37	1	1	59	1.18
15825198--15825259	14	4.5	13	75	22	56	38	1	1	58	1.18
15829074--15829119	19	2.6	18	83	10	58	52	2	0	45	1.13
15838481--15838629	72	2.1	72	98	0	289	46	18	12	22	1.81
15840847--15840875	9	3.0	10	90	10	51	27	0	0	72	0.85
15850284--15850312	9	3.2	9	100	0	58	68	0	0	31	0.89
15850651--15850700	23	2.2	23	85	7	66	36	0	4	60	1.16
15855563--15855593	15	2.1	15	93	0	53	64	6	9	19	1.45
15855793--15855863	31	2.3	31	95	0	124	36	11	14	38	1.81
15856085--15856131	19	2.5	20	75	10	53	27	6	0	65	1.16
15868085--15868115	15	2.1	15	100	0	62	32	0	0	67	0.91
15869983--15870007	12	2.1	12	100	0	50	40	0	8	52	1.31
15870529--15870569	13	3.4	13	74	19	52	68	4	4	21	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15870530--15870573	23	1.9	23	100	0	88	72	4	4	18	1.19
15879703--15879775	29	2.4	30	82	11	87	52	2	0	45	1.15
15884553--15884607	28	2.0	28	85	7	76	23	10	9	56	1.62
15884797--15884838	22	1.9	23	85	9	61	16	38	40	4	1.70
15885134--15885175	23	1.9	21	85	9	57	21	7	7	64	1.43
15885449--15885506	24	2.5	23	78	10	57	29	0	5	65	1.14
15885449--15885498	24	2.1	24	88	0	73	28	0	6	66	1.15
15885508--15885560	16	3.4	16	74	10	56	35	3	7	52	1.48
15899020--15899062	23	1.9	23	85	4	61	20	6	6	65	1.41
15899338--15899395	24	2.5	23	78	10	57	29	0	5	65	1.14
15899338--15899387	24	2.1	24	88	0	73	28	0	6	66	1.15
15899397--15899442	10	4.8	10	76	10	51	34	2	8	54	1.43
15899397--15899447	14	3.6	14	74	10	50	35	3	7	52	1.49
15906131--15906215	9	9.4	9	85	0	116	44	21	8	25	1.79
15906310--15906353	18	2.4	18	88	0	61	13	2	43	40	1.57
15907549--15907605	30	1.9	30	85	7	80	71	3	22	1	1.10
15907956--15907987	7	4.4	7	96	4	55	12	0	0	87	0.54
15907976--15908071	45	2.1	46	84	5	124	25	6	11	57	1.57
15915899--15915923	3	8.3	3	100	0	50	32	0	0	68	0.90
15921104--15921139	11	3.3	11	88	0	54	13	0	5	80	0.88
15932537--15932702	39	4.3	39	87	0	224	34	18	31	15	1.93
15932558--15932661	20	5.3	20	71	13	90	31	18	34	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15935493--15935592	34	2.9	34	77	0	101	30	18	15	37	1.91
15939258--15939316	2	29.5	2	100	0	118	0	0	50	49	1.00
15940711--15940750	19	2.2	19	90	4	64	37	0	0	62	0.95
15940711--15940763	19	2.8	19	85	5	63	37	3	1	56	1.28
15943319--15943359	20	2.1	19	86	4	55	46	9	7	36	1.65
15952942--15952983	3	14.3	3	95	5	77	0	30	0	69	0.89
15955581--15955713	69	1.9	69	98	0	257	38	14	18	29	1.90
15961027--15961065	20	2.0	20	84	0	51	48	15	10	25	1.76
15961426--15961492	33	2.0	33	85	5	91	34	23	8	32	1.86
15971135--15971200	26	2.5	26	92	0	105	21	25	27	25	1.99
15974044--15974098	19	2.9	18	89	7	58	32	1	0	65	1.03
15974051--15974111	19	3.1	19	88	11	88	27	1	0	70	0.97
15980121--15980145	12	2.1	12	100	0	50	36	16	8	40	1.77
15981661--15981733	33	2.2	34	85	7	96	30	9	16	43	1.80
15987042--15987108	11	6.4	11	79	6	68	37	5	0	56	1.24
15987094--15987159	27	2.4	28	94	5	116	28	3	0	68	1.05
15987034--15987135	41	2.6	39	89	6	161	33	4	0	61	1.17
16000324--16000699	124	3.0	124	92	0	617	29	15	21	32	1.95
16003730--16003898	38	4.4	38	65	19	91	44	5	9	40	1.60
16003711--16004069	116	3.1	116	96	1	648	44	6	8	39	1.63
16003939--16004006	17	3.8	17	71	16	57	48	1	5	44	1.36
16004063--16004603	23	24.1	22	76	16	485	26	0	24	48	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16004460--16004540	38	2.1	38	90	4	128	27	1	22	49	1.57
16004516--16004544	15	2.0	15	93	6	51	20	0	27	51	1.47
16004078--16004606	68	7.9	67	78	14	481	26	0	24	48	1.55
16004649--16004696	25	1.9	25	100	0	96	39	14	0	45	1.45
16005129--16005164	18	2.0	18	94	0	63	38	8	27	25	1.84
16005815--16005839	7	3.6	7	100	0	50	60	12	0	28	1.32
16006939--16006981	11	3.8	12	81	6	54	58	0	0	41	0.98
16006988--16007029	11	3.8	11	90	0	66	50	7	21	21	1.72
16015754--16015839	23	3.9	22	79	8	95	38	23	19	18	1.93
16016763--16016804	13	3.3	13	80	6	50	50	7	0	42	1.30
16019304--16019338	14	2.5	14	90	0	52	54	0	17	28	1.43
16028253--16028564	168	1.8	166	83	4	399	37	14	14	33	1.87
16031229--16031264	17	2.1	16	90	10	54	44	0	5	50	1.25
16032434--16032478	22	2.2	20	88	8	63	28	4	2	64	1.25
16037076--16037107	16	1.9	17	93	6	57	40	6	0	53	1.26
16040194--16040245	12	4.4	11	76	13	50	78	1	1	17	0.93
16040480--16040504	13	1.9	13	100	0	50	32	8	48	12	1.69
16041696--16042222	44	12.0	43	65	17	156	28	22	18	29	1.98
16041708--16042074	94	4.1	89	70	8	255	28	22	17	31	1.97
16042014--16042210	44	4.5	44	76	12	169	27	24	19	27	1.99
16041837--16042129	89	3.3	88	69	8	256	27	23	20	28	1.99
16056666--16056699	18	2.0	16	88	11	50	58	0	8	32	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16059156--16059211	24	2.4	23	80	11	60	62	1	5	30	1.28
16062457--16062517	24	2.4	26	81	10	90	22	8	16	52	1.70
16064198--16064256	16	3.7	16	97	0	109	23	33	1	40	1.65
16064302--16064393	45	2.1	43	90	8	141	31	4	29	34	1.77
16064538--16064998	120	3.8	120	96	0	827	52	4	1	41	1.28
16067827--16067886	29	2.1	29	100	0	120	30	23	11	35	1.90
16068048--16068077	14	2.1	14	100	0	60	50	10	6	33	1.62
16070987--16071023	20	1.9	19	89	10	58	37	0	5	56	1.22
16071865--16071915	25	2.1	25	85	3	68	9	0	13	76	1.02
16079568--16079637	16	4.4	16	90	0	113	31	1	35	31	1.67
16079616--16079706	45	2.0	44	85	2	119	30	5	28	35	1.80
16079849--16079886	16	2.4	17	82	13	53	52	2	0	44	1.14
16079832--16079997	22	8.0	21	68	20	91	54	2	1	41	1.21
16079932--16079972	13	3.2	12	80	12	55	58	0	0	41	0.98
16079960--16079995	18	2.0	18	100	0	72	66	0	0	33	0.92
16080083--16080117	18	2.0	17	94	5	61	57	0	0	42	0.99
16079887--16080178	59	4.8	60	68	15	183	52	4	1	40	1.33
16079887--16080194	121	2.6	120	93	1	519	52	4	1	40	1.32
16081678--16081707	13	2.3	13	94	0	51	30	13	6	50	1.67
16092408--16092440	16	2.1	16	100	0	66	36	6	36	21	1.78
16092672--16092706	18	2.0	17	88	5	52	54	0	0	45	0.99
16092681--16092994	61	5.2	61	70	13	254	48	5	2	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16092748--16092936	59	3.2	58	72	16	197	49	3	3	43	1.36
16092652--16093023	120	3.1	120	94	1	647	48	5	2	43	1.37
16092910--16092946	16	2.2	17	86	13	51	54	0	2	43	1.14
16096175--16096212	16	2.4	16	90	0	58	31	0	34	34	1.58
16096191--16096285	45	2.1	44	88	1	136	34	5	27	32	1.79
16096447--16096481	18	2.0	17	88	5	52	54	0	0	45	0.99
16096405--16096477	27	2.7	27	76	8	76	52	2	0	45	1.15
16096594--16096628	18	2.0	17	88	5	52	54	0	0	45	0.99
16096366--16096640	147	1.9	149	96	1	509	46	3	2	47	1.33
16096614--16096792	55	3.1	54	64	22	128	49	7	2	41	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207