genome.fa.s19.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  43  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12607779--12607812	18	1.9	17	88	5	50	29	0	23	47	1.52
12620166--12620201	16	2.2	16	90	0	54	72	0	2	25	0.98
12628540--12628577	17	2.2	17	90	0	58	47	0	2	50	1.15
12629688--12629737	24	2.1	24	85	7	66	46	6	32	16	1.71
12635183--12635299	39	3.0	39	94	1	200	51	27	3	17	1.62
12635503--12635553	9	5.7	9	86	4	68	25	3	19	50	1.64
12635495--12635552	27	2.1	27	87	6	82	25	5	22	46	1.72
12637948--12638010	33	1.9	33	90	0	99	15	17	17	49	1.80
12637959--12638037	33	2.4	33	82	4	88	17	15	17	49	1.80
12639336--12639409	38	1.9	37	84	10	96	54	1	1	43	1.17
12644293--12644387	43	2.2	43	86	0	127	33	25	12	28	1.92
12645582--12645681	20	5.0	20	67	0	65	25	19	19	37	1.94
12645582--12645712	40	3.3	40	83	2	165	25	19	18	37	1.94
12645633--12645699	20	3.3	20	73	8	64	26	22	19	31	1.98
12651551--12651604	7	8.1	7	83	4	51	31	31	12	24	1.93
12662139--12662190	24	2.2	24	85	0	68	34	3	11	50	1.57
12666851--12666891	18	2.2	19	86	8	57	53	41	2	2	1.27
12668049--12668103	3	18.7	3	81	3	67	36	0	3	60	1.15
12668183--12668224	20	2.0	21	86	4	59	38	11	2	47	1.53
12669067--12669419	173	2.0	173	95	0	636	30	19	14	34	1.92
12678785--12678829	19	2.4	18	85	10	56	37	8	24	28	1.86
12679318--12679417	45	2.2	45	85	0	137	32	22	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12679435--12679961	99	5.3	98	86	1	676	29	22	21	25	1.99
12679484--12679964	50	9.7	49	70	4	302	30	22	21	25	1.99
12681663--12681710	3	16.0	3	82	0	60	31	0	6	62	1.20
12681783--12681830	24	2.0	24	87	0	69	41	10	4	43	1.58
12682679--12683031	173	2.0	173	95	0	627	30	19	14	35	1.92
12683485--12683514	15	2.0	15	93	0	51	0	0	83	16	0.65
12684618--12684943	168	1.9	168	100	0	652	37	8	7	46	1.63
12685507--12685558	24	2.2	24	85	0	68	25	25	5	44	1.76
12699227--12699251	13	1.9	13	100	0	50	44	8	8	40	1.63
12700113--12700149	14	2.6	14	91	0	56	32	8	0	59	1.27
12706339--12706380	19	2.3	18	84	12	50	45	0	0	54	0.99
12706685--12706748	27	2.4	26	89	2	101	40	4	3	51	1.38
12722294--12722332	18	2.2	18	86	9	53	20	0	12	66	1.24
12724947--12724974	13	2.2	13	100	0	56	57	7	7	28	1.52
12725465--12725491	13	2.1	13	100	0	54	33	14	14	37	1.88
12730060--12730120	30	2.0	30	100	0	122	24	6	36	32	1.81
12730965--12731075	41	2.7	40	79	9	116	28	25	18	27	1.98
12731243--12731585	30	11.4	30	90	0	490	43	19	8	28	1.80
12740893--12741014	54	2.3	54	94	2	210	33	9	14	41	1.79
12740966--12741004	19	2.1	19	90	0	60	30	7	10	51	1.64
12741319--12741402	41	2.0	41	100	0	168	30	21	16	30	1.95
12748303--12748330	9	3.1	9	100	0	56	32	10	10	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12749516--12749642	68	1.9	68	96	0	236	37	18	18	25	1.93
12752191--12752220	15	2.1	14	93	6	51	66	0	26	6	1.16
12757628--12757659	13	2.5	13	100	0	64	34	6	15	43	1.72
12762091--12762137	23	2.0	23	83	0	58	59	12	6	21	1.55
12766066--12766233	90	1.9	90	81	5	205	34	16	22	27	1.95
12766181--12766294	47	2.4	47	79	5	124	35	14	23	26	1.94
12767455--12767501	17	2.9	16	76	17	60	59	0	38	2	1.09
12773096--12773137	22	1.9	22	90	0	66	30	21	19	28	1.97
12775017--12775092	11	6.8	11	70	24	52	42	1	2	53	1.23
12784287--12784374	45	2.0	45	93	0	149	35	22	17	25	1.95
12784385--12784571	51	3.7	51	77	3	207	32	27	16	24	1.96
12784383--12784567	101	1.8	101	88	3	282	32	27	16	23	1.96
12786846--12786910	27	2.4	27	97	0	121	27	23	33	15	1.95
12787133--12787158	12	2.2	12	100	0	52	38	0	15	46	1.46
12787227--12787604	22	17.0	21	75	17	265	31	1	13	54	1.46
12787225--12787604	19	21.2	19	67	23	184	31	1	13	54	1.46
12787350--12787583	98	2.5	89	85	11	288	31	0	13	54	1.45
12787379--12787657	49	5.7	49	87	3	404	31	1	13	53	1.47
12787379--12787604	27	9.1	25	78	18	242	31	0	13	53	1.45
12787645--12787766	60	2.0	60	85	3	165	30	0	14	54	1.47
12787880--12787921	16	2.7	15	85	7	57	38	2	2	57	1.25
12790622--12790675	22	2.4	23	84	12	76	1	31	1	64	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12797416--12797450	2	17.5	2	100	0	70	48	0	0	51	1.00
12798134--12798193	30	2.0	31	86	3	86	20	40	0	40	1.52
12798293--12798339	20	2.3	20	82	7	51	23	31	0	44	1.54
12798450--12798496	17	2.8	17	79	20	62	36	2	6	55	1.37
12801839--12801888	23	2.3	23	86	6	68	68	2	24	6	1.23
12805099--12805129	9	3.4	9	90	0	53	25	12	22	38	1.90
12806526--12806572	23	2.0	23	84	8	60	59	19	14	6	1.56
12808014--12808044	12	2.7	11	90	9	53	29	0	0	70	0.87
12811636--12811689	15	3.5	15	78	9	56	68	3	18	9	1.32
12814130--12814167	3	12.7	3	100	0	76	68	31	0	0	0.90
12815519--12815556	19	2.0	19	85	10	51	21	42	0	36	1.53
12820094--12820128	16	2.1	16	89	5	52	65	2	5	25	1.28
12825922--12825950	15	1.9	15	100	0	58	24	41	6	27	1.80
12825941--12825989	6	8.7	6	76	13	50	12	51	0	36	1.40
12825946--12825998	21	2.5	21	87	0	79	13	47	1	37	1.54
12825952--12825980	15	1.9	15	100	0	58	10	48	0	41	1.37
12827778--12827824	17	2.8	17	78	18	53	80	10	4	4	0.98
12827811--12827866	28	2.0	28	100	0	112	46	21	14	17	1.84
12828765--12830359	278	5.7	280	85	3	1904	38	7	13	39	1.73
12833962--12834030	29	2.4	28	83	9	86	31	1	0	66	1.00
12835074--12835378	43	7.2	43	82	3	300	27	28	17	26	1.97
12835074--12835378	85	3.6	85	80	3	330	27	28	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12835626--12835712	43	2.0	43	86	0	120	44	10	11	33	1.74
12839343--12839430	25	3.6	25	71	20	69	31	6	2	59	1.36
12839345--12839393	25	2.0	24	88	7	73	26	4	4	65	1.29
12839345--12839389	23	2.0	22	83	8	56	28	4	4	62	1.34
12839378--12839420	16	2.6	17	75	10	54	27	9	0	62	1.25
12839850--12839884	4	8.8	4	87	12	54	25	0	0	74	0.82
12839843--12839883	15	2.7	15	92	7	66	26	0	0	73	0.84
12842149--12842202	14	3.9	14	76	7	56	38	35	0	25	1.57
12842153--12842213	29	2.1	29	82	11	72	36	37	0	26	1.57
12842697--12842886	41	4.6	41	86	1	229	31	25	22	21	1.98
12844174--12844252	29	2.7	30	74	7	81	32	17	7	41	1.78
12844292--12844387	46	2.1	46	84	0	120	43	19	2	34	1.63
12844338--12844479	65	2.2	65	87	0	194	48	22	0	28	1.56
12850188--12850246	19	3.2	18	77	20	59	59	3	0	37	1.14
12850198--12850256	9	6.2	9	77	16	57	57	5	0	37	1.21
12850201--12850257	10	6.0	10	76	13	50	57	5	0	36	1.21
12850459--12850540	43	1.9	43	94	0	146	31	23	8	36	1.85
12856525--12856568	17	2.5	18	81	3	54	72	4	18	4	1.19
12856548--12856588	20	2.1	19	86	4	55	75	4	17	2	1.08
12857555--12857586	5	6.8	5	92	7	50	59	0	0	40	0.97
12862474--12862523	24	2.1	24	100	0	100	36	8	16	40	1.77
12865009--12865099	41	2.2	41	98	0	173	48	15	12	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12866390--12866477	44	2.0	44	86	0	122	37	10	26	26	1.88
12869409--12869449	3	13.7	3	100	0	82	31	34	0	34	1.58
12870157--12870201	22	2.0	22	83	8	56	40	4	0	55	1.20
12870861--12870897	20	1.9	18	89	10	56	37	0	8	54	1.30
12875726--12875785	25	2.4	26	74	17	65	35	5	1	58	1.30
12877974--12878003	15	2.0	15	93	0	51	76	0	23	0	0.78
12886809--12886933	57	2.2	57	90	7	191	47	6	19	27	1.73
12894307--12894339	16	2.0	17	88	5	50	27	6	18	48	1.71
12894770--12895123	53	6.7	52	82	5	349	33	12	26	27	1.92
12894770--12895123	106	3.4	105	84	2	397	33	12	26	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207