genome.fa.s19.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  156  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47891638--47891697	31	2.0	30	87	6	86	40	6	1	51	1.38
47892191--47892627	109	4.0	109	95	1	736	31	17	17	33	1.94
47903913--47904513	44	13.8	44	66	13	238	29	18	24	27	1.98
47903908--47904578	131	5.1	131	91	1	1076	29	19	24	26	1.98
47906319--47906354	3	12.0	3	100	0	72	33	0	0	66	0.92
47906435--47906494	9	6.6	9	72	11	50	38	8	1	51	1.42
47906428--47906463	16	2.2	17	90	5	56	36	11	0	52	1.37
47910793--47910850	29	2.0	29	96	0	107	36	0	29	34	1.58
47911504--47911550	25	1.9	25	86	4	69	17	19	19	44	1.87
47911608--47911708	26	3.9	25	85	5	103	16	22	19	40	1.91
47911778--47911839	24	2.6	24	77	10	72	16	20	22	40	1.91
47920030--47920217	81	2.3	82	87	7	260	36	17	27	18	1.93
47920030--47920217	41	4.6	41	86	7	251	36	17	27	18	1.93
47920096--47920159	20	3.2	20	68	4	65	39	17	31	12	1.87
47932405--47932435	14	2.3	13	94	5	53	45	6	0	48	1.28
47932549--47932952	215	1.9	216	86	1	587	32	16	10	40	1.82
47935487--47935531	15	2.9	17	71	25	53	37	26	6	28	1.82
47940730--47940760	9	3.4	9	90	0	53	25	12	22	38	1.90
47941863--47941888	5	5.2	5	100	0	52	19	19	19	42	1.90
47947930--47947989	30	2.0	31	86	3	86	40	0	40	20	1.52
47948125--47948165	21	2.0	21	85	9	57	43	0	34	21	1.53
47948203--47948239	9	4.1	9	85	0	56	29	8	13	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47950522--47950633	27	4.2	27	78	5	111	32	12	22	33	1.91
47957411--47957442	2	16.0	2	93	0	55	53	0	46	0	1.00
47962835--47962892	18	3.2	18	78	11	73	41	3	0	55	1.17
47962842--47962897	18	3.0	19	81	5	78	33	3	0	62	1.12
47974447--47974499	12	4.5	12	90	4	90	15	15	16	52	1.74
47974552--47974577	4	6.5	4	100	0	52	0	0	23	76	0.78
47974582--47974633	12	4.2	12	76	11	52	30	15	11	42	1.82
47974593--47974656	24	2.7	23	88	7	85	32	12	15	39	1.85
47974622--47974668	23	2.0	23	84	8	60	40	10	17	31	1.83
47976328--47976391	27	2.4	28	80	15	73	62	0	6	31	1.20
47979614--47979677	33	1.9	34	84	9	87	34	21	9	34	1.86
47980157--47980215	18	3.3	18	65	25	52	23	23	3	49	1.65
47980152--47980226	36	2.1	36	97	0	141	28	22	2	46	1.65
47988355--47988415	25	2.6	23	78	5	59	59	9	3	27	1.45
47988577--47988668	6	14.8	6	70	10	51	59	3	7	29	1.41
47988598--47988644	21	2.2	21	85	7	60	59	2	12	25	1.45
47993315--47993485	86	2.0	86	94	2	299	39	16	12	31	1.85
47997742--47997793	22	2.4	22	83	0	68	46	15	17	21	1.84
47997783--47997926	32	4.5	33	77	10	138	40	19	18	22	1.92
47997783--47997923	64	2.2	64	84	5	187	40	19	17	22	1.91
47998093--47998150	24	2.4	24	91	0	89	48	27	6	17	1.72
47998131--47998179	24	2.0	24	88	0	71	42	26	8	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47998213--47998419	27	7.8	26	78	4	171	25	20	19	34	1.96
47998252--47998407	53	2.9	54	83	4	192	26	23	17	32	1.97
47998196--47998407	80	2.7	80	83	0	219	25	22	18	33	1.97
47998269--47998419	80	1.9	80	90	0	239	26	23	17	32	1.96
47998385--47998526	54	2.6	55	84	6	166	24	19	18	38	1.93
47998414--47998526	27	4.2	27	90	2	165	23	19	17	38	1.93
48000410--48000462	21	2.5	21	93	0	88	33	20	16	28	1.95
48000623--48000656	15	2.3	15	100	0	68	35	17	17	29	1.93
48000650--48000716	34	1.9	34	87	6	98	38	16	13	31	1.87
48003662--48004460	152	5.3	151	92	2	1252	30	9	7	52	1.61
48004464--48007273	143	18.8	150	81	8	2919	50	8	9	31	1.64
48004464--48007273	292	9.4	291	82	8	2704	50	8	9	31	1.64
48008045--48008089	11	4.1	11	85	0	63	20	31	2	46	1.62
48008045--48008105	22	2.8	22	85	5	70	22	31	1	44	1.63
48008045--48008107	33	1.9	33	90	6	101	23	30	1	44	1.63
48008067--48008166	51	2.0	51	89	0	155	26	26	2	46	1.64
48008040--48008153	22	4.8	22	67	19	59	22	28	1	47	1.61
48010381--48010501	49	2.5	49	97	0	224	45	2	9	42	1.49
48014825--48015055	127	1.8	126	88	0	354	29	19	17	33	1.95
48015461--48015599	45	3.1	45	70	8	131	26	28	19	25	1.99
48015477--48015611	44	3.1	44	71	12	141	25	27	20	25	1.99
48015447--48015619	88	2.0	88	90	0	274	24	26	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48016855--48016907	8	6.5	8	79	18	56	13	9	0	77	0.99
48016846--48016906	32	1.9	32	86	6	88	13	11	0	75	1.05
48016861--48016909	21	2.3	21	80	10	55	12	8	0	79	0.93
48023529--48023575	9	5.3	9	75	14	53	65	0	2	31	1.04
48023654--48023720	30	2.2	30	79	10	75	62	2	1	32	1.19
48023652--48023720	33	2.1	33	86	0	93	62	2	1	33	1.19
48023652--48023703	3	17.3	3	88	7	79	63	0	0	36	0.95
48025796--48025837	23	1.9	22	90	9	68	50	0	2	47	1.14
48025800--48025847	23	2.2	22	85	14	64	50	0	2	47	1.12
48031742--48031784	21	2.0	21	86	0	59	44	0	32	23	1.54
48036070--48036414	46	7.6	46	93	0	563	34	15	21	28	1.94
48038307--48038512	103	2.0	103	100	0	412	35	15	6	41	1.74
48048732--48048768	9	4.1	9	92	0	65	29	10	13	45	1.77
48050153--48050191	19	2.1	19	100	0	78	23	20	10	46	1.81
48052689--48052725	15	2.5	15	95	0	65	35	18	13	32	1.90
48053428--48053465	9	4.1	9	84	15	51	55	0	0	44	0.99
48055237--48055266	16	1.9	15	93	6	51	46	20	0	33	1.51
48059657--48059683	5	5.4	5	100	0	54	18	0	0	81	0.69
48061513--48061554	21	2.1	19	83	16	50	42	0	14	42	1.45
48062559--48062593	15	2.3	15	95	0	61	65	11	0	22	1.24
48062610--48062652	23	1.9	22	85	4	59	67	6	2	23	1.27
48063013--48063056	23	2.0	22	90	4	70	61	4	0	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48064884--48064936	16	3.4	15	75	17	54	33	0	0	66	0.92
48065021--48065053	18	1.9	17	88	11	50	57	9	3	30	1.45
48065456--48065508	20	2.7	19	77	11	54	54	1	0	43	1.11
48065486--48065566	31	2.7	29	79	12	74	46	0	3	49	1.19
48068187--48068236	13	3.9	12	77	12	55	36	28	10	26	1.88
48076006--48076034	13	2.1	14	93	6	51	27	6	6	58	1.50
48083792--48083822	16	1.9	16	100	0	62	58	6	0	35	1.24
48088702--48088740	17	2.3	17	86	8	53	48	0	2	48	1.15
48089080--48089116	12	2.8	14	80	16	51	51	0	13	35	1.41
48092387--48092499	37	3.1	37	78	17	105	42	3	3	50	1.36
48094261--48094298	20	1.9	20	84	10	51	47	13	10	28	1.76
48099124--48099280	43	3.7	42	76	14	162	29	29	18	22	1.97
48106555--48106711	43	3.7	42	76	14	162	29	29	18	22	1.97
48108439--48108474	15	2.5	15	90	4	56	25	5	13	55	1.60
48123888--48123936	22	2.3	22	89	3	82	38	8	26	26	1.84
48126795--48126824	4	7.2	4	92	7	51	53	0	0	46	1.00
48130241--48130273	11	3.1	11	91	8	59	27	0	39	33	1.57
48130698--48130778	26	3.1	26	80	7	67	18	18	20	41	1.90
48137455--48137608	26	6.1	25	76	8	127	16	23	22	37	1.94
48137489--48137616	24	5.2	24	75	7	105	19	25	21	33	1.97
48137525--48137672	73	2.0	72	82	6	174	19	24	20	35	1.96
48137467--48137616	24	6.0	24	76	7	104	18	24	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48138450--48138490	13	3.2	13	100	0	82	39	7	7	46	1.60
48154800--48154872	32	2.3	32	92	0	128	23	30	2	43	1.67
48156756--48156900	28	5.2	28	86	2	177	33	23	21	21	1.97
48157210--48157914	27	26.2	26	78	6	337	19	19	18	42	1.89
48157209--48157914	161	4.4	160	80	7	673	19	19	18	42	1.89
48162310--48162364	16	3.4	16	69	18	51	23	29	0	47	1.52
48162291--48162365	32	2.3	32	93	0	123	24	28	1	46	1.60
48189562--48189663	30	3.4	30	76	0	87	21	24	12	41	1.88
48193555--48193589	11	3.2	11	91	0	52	5	20	0	74	1.02
48198354--48198494	59	2.4	58	80	10	180	25	19	7	48	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207