genome.fa.s19.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  42  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12262370--12262414	23	2.0	23	86	0	63	37	13	24	24	1.91
12262484--12262537	23	2.4	22	84	9	72	33	14	20	31	1.93
12265440--12265488	24	2.0	24	88	0	71	44	24	6	24	1.76
12265449--12265513	24	2.6	27	83	9	75	41	20	12	26	1.87
12265509--12265693	27	6.8	27	81	4	203	23	23	21	32	1.98
12265520--12265693	82	2.1	82	85	3	235	23	22	22	31	1.98
12277425--12277587	43	3.8	43	71	18	124	25	19	26	28	1.98
12277770--12277806	18	2.0	19	85	15	51	43	5	18	32	1.73
12282377--12282422	22	2.1	22	100	0	92	50	8	23	17	1.74
12282718--12282750	13	2.4	14	90	10	50	42	3	0	54	1.15
12284511--12284562	24	2.2	24	82	0	59	50	9	5	34	1.59
12285738--12285772	6	5.8	6	100	0	70	0	65	0	34	0.93
12292679--12292809	13	9.8	13	72	17	90	35	16	2	45	1.60
12292667--12292743	40	1.9	39	85	12	104	36	19	1	42	1.60
12292695--12292776	27	3.0	28	87	8	116	34	15	2	47	1.59
12292667--12292817	67	2.3	67	84	10	202	33	16	1	47	1.58
12295444--12295521	21	3.7	21	89	0	111	29	32	25	12	1.93
12300575--12300707	57	2.3	57	89	0	194	47	15	9	27	1.76
12311601--12311661	30	2.0	32	83	6	81	39	1	39	19	1.62
12311876--12311912	9	4.1	9	89	0	56	32	10	10	45	1.74
12312252--12312289	18	2.1	18	85	9	51	55	21	2	21	1.56
12312931--12312994	25	2.6	24	80	2	83	35	21	26	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12312931--12313001	24	2.9	24	74	17	74	35	23	25	15	1.94
12324440--12324487	24	2.0	24	84	8	62	22	22	22	31	1.99
12324444--12324505	24	2.6	23	77	10	61	20	24	24	30	1.99
12326626--12326650	13	1.9	13	100	0	50	44	0	0	56	0.99
12329676--12329708	15	2.1	17	88	11	52	72	3	0	24	0.98
12335478--12335512	17	2.1	17	89	10	54	37	5	28	28	1.80
12337014--12337052	16	2.5	15	84	8	51	38	2	2	56	1.27
12337020--12337067	21	2.2	21	85	3	60	37	4	2	56	1.30
12340086--12340158	22	3.5	22	68	25	68	45	21	4	28	1.70
12340028--12340165	39	3.5	39	88	0	186	44	21	4	29	1.71
12342041--12342094	21	2.6	21	85	8	76	33	22	12	31	1.92
12342041--12342108	21	3.3	20	80	10	75	36	20	13	29	1.91
12351792--12351893	33	3.1	33	82	2	116	41	3	37	17	1.68
12357997--12358037	21	1.9	22	85	5	57	26	14	14	43	1.84
12360302--12360473	50	3.3	50	81	4	155	27	22	27	22	1.99
12373883--12374059	69	2.6	69	84	1	221	33	29	12	24	1.93
12374023--12374241	68	3.2	67	79	3	251	34	31	15	19	1.92
12402472--12402556	43	2.0	43	88	4	127	23	24	1	50	1.56
12403780--12403818	15	2.5	15	91	4	60	43	5	0	51	1.24
12425988--12426051	32	2.0	32	93	0	110	32	1	29	35	1.67
12426492--12426541	14	3.8	13	82	10	57	30	2	10	58	1.42
12426492--12426541	12	3.9	12	79	20	57	30	2	10	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12426492--12426550	26	2.2	28	85	8	79	30	3	8	57	1.45
12428983--12429058	34	2.3	34	90	2	118	42	7	15	34	1.76
12429012--12429113	45	2.3	45	94	0	177	39	11	17	31	1.86
12443349--12443477	44	3.0	43	75	13	122	23	17	27	32	1.96
12443954--12444000	24	1.9	25	86	4	69	40	0	31	27	1.57
12444419--12444626	81	2.6	81	87	1	283	41	17	21	19	1.90
12444419--12444643	27	8.3	27	82	4	222	41	16	21	20	1.90
12444818--12444890	25	2.8	26	89	2	103	16	23	21	38	1.93
12444829--12444890	26	2.4	25	91	2	97	14	25	22	37	1.92
12448110--12448157	21	2.3	21	78	7	53	25	0	16	58	1.38
12449414--12449480	35	1.9	35	90	0	107	46	8	4	40	1.56
12451946--12452101	43	3.7	43	73	10	151	30	28	16	24	1.97
12451946--12452101	84	1.9	84	81	10	194	30	28	16	24	1.97
12453372--12453475	13	7.8	13	86	3	127	53	7	4	33	1.50
12453372--12453459	40	2.2	40	93	0	149	50	7	5	36	1.56
12454741--12454782	7	6.1	7	77	5	50	35	0	50	14	1.43
12455052--12455144	28	3.3	28	64	16	75	32	9	2	55	1.44
12455037--12455146	56	2.0	56	100	0	220	31	9	2	56	1.45
12455866--12456191	139	2.3	140	82	5	401	35	18	19	26	1.95
12459023--12459104	20	4.2	19	77	13	76	39	17	30	13	1.88
12459021--12459097	40	1.9	39	84	2	100	40	16	28	14	1.88
12467519--12467561	15	2.9	14	80	13	50	69	9	2	18	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12474626--12474679	27	2.0	27	100	0	108	48	14	3	33	1.62
12478278--12478322	13	3.4	14	76	14	51	42	22	2	33	1.66
12479729--12479965	40	5.9	40	93	0	384	17	30	18	32	1.94
12479758--12479862	20	5.2	21	68	9	92	16	29	20	34	1.94
12479885--12479950	20	3.3	20	66	8	62	18	37	16	27	1.92
12493473--12493520	18	2.7	17	84	9	60	31	10	0	58	1.32
12493584--12493673	47	1.9	46	82	6	110	32	8	1	57	1.37
12494820--12494859	18	2.2	18	86	8	55	55	0	0	45	0.99
12496160--12496199	14	2.9	14	84	0	53	32	7	17	42	1.77
12496327--12496373	18	2.5	19	75	10	51	42	2	0	55	1.12
12496946--12496990	21	2.1	21	83	0	54	13	4	24	57	1.54
12503697--12503748	22	2.4	22	90	0	77	17	17	17	48	1.82
12503747--12503803	20	2.8	20	86	0	69	8	26	22	42	1.83
12503776--12503813	20	1.9	20	88	0	58	7	31	18	42	1.79
12510545--12510604	26	2.3	26	88	8	86	45	15	18	21	1.86
12510545--12510604	27	2.3	27	88	8	88	45	15	18	21	1.86
12510839--12510919	26	3.1	26	80	3	92	19	20	24	34	1.96
12510921--12511051	58	2.3	58	90	0	199	11	10	39	38	1.76
12511079--12511257	28	6.4	28	88	3	265	22	24	24	29	1.99
12520684--12520747	32	2.0	32	93	0	110	39	21	15	23	1.92
12525557--12525707	74	2.0	74	97	0	284	35	17	18	28	1.93
12529950--12529984	17	2.1	16	89	5	52	20	14	14	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12533848--12533904	26	2.2	26	87	0	78	43	14	19	22	1.86
12542317--12542391	19	3.8	19	86	6	105	41	9	14	34	1.78
12542330--12542414	19	4.0	22	79	14	90	38	8	15	37	1.77
12542934--12543009	36	2.1	36	80	11	84	38	9	1	51	1.42
12543100--12543143	23	2.0	22	90	4	70	34	6	2	56	1.38
12544344--12544373	3	10.0	3	100	0	60	33	0	0	66	0.92
12545708--12545801	31	3.0	32	70	13	88	45	12	3	38	1.58
12545708--12545829	61	2.0	61	85	0	163	50	9	2	37	1.49
12545806--12545850	17	2.6	18	80	16	51	60	0	0	40	0.97
12549263--12549395	43	3.1	43	78	6	137	33	27	14	25	1.94
12564843--12564894	26	2.0	26	96	0	95	28	34	23	13	1.92
12564708--12564972	103	2.6	104	90	3	410	30	30	20	18	1.96
12567829--12567871	23	1.9	21	81	13	50	39	2	23	34	1.67
12572479--12572539	17	3.4	18	79	20	74	42	1	6	49	1.38
12581312--12581372	30	2.0	32	83	6	81	60	1	6	31	1.32
12581507--12581538	15	2.1	15	94	0	55	46	0	0	53	1.00
12581882--12581910	15	1.9	15	100	0	58	31	0	0	68	0.89
12581867--12581922	16	3.5	16	82	7	60	30	0	3	66	1.09
12592516--12592650	42	3.2	42	84	3	164	21	18	18	41	1.90
12592699--12592796	43	2.3	43	94	0	178	23	13	17	45	1.83
12594674--12594727	16	3.4	16	94	0	90	33	0	35	31	1.58
12594706--12594800	45	2.1	44	90	1	145	32	5	27	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12594960--12594994	18	2.0	17	88	5	52	54	0	0	45	0.99
12595087--12595128	15	2.7	16	82	14	52	52	2	0	45	1.13
12595096--12595137	15	2.9	15	82	10	52	52	0	0	47	1.00
12594881--12595153	147	1.9	147	96	1	512	47	3	2	46	1.34
12595085--12595382	120	2.5	121	92	4	496	50	5	2	42	1.37
12595319--12595395	28	2.9	27	70	18	70	55	0	2	41	1.13
12595325--12595605	91	3.0	93	80	10	286	48	2	3	44	1.35
12595398--12595605	91	2.3	91	87	2	292	47	3	4	45	1.39
12595448--12595586	47	3.0	46	68	17	126	48	4	2	43	1.37
12597007--12597037	15	2.1	15	93	0	53	45	9	9	35	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207