genome.fa.s19.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  103  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29438478--29438531	22	2.6	21	83	13	67	46	0	25	27	1.53
29450640--29450684	22	2.0	22	100	0	90	35	17	13	33	1.89
29454692--29454729	20	1.9	20	88	0	58	47	10	0	42	1.38
29455070--29455110	21	2.0	21	85	0	55	56	7	9	26	1.58
29456259--29456297	16	2.4	16	91	4	60	58	15	0	25	1.37
29456564--29456729	43	3.9	43	92	0	260	32	26	17	23	1.97
29458924--29459002	20	4.0	20	67	16	58	69	11	13	5	1.33
29461100--29461139	16	2.6	16	88	7	57	45	0	35	20	1.51
29461459--29461557	47	2.1	48	96	1	182	46	0	7	46	1.30
29461543--29461595	25	2.1	26	82	3	63	18	3	5	71	1.21
29461542--29461595	19	2.8	18	78	10	54	20	3	5	70	1.23
29461912--29461962	14	3.6	14	83	2	57	31	47	0	21	1.51
29461904--29461982	21	3.7	21	75	8	79	32	41	1	24	1.63
29462244--29462297	26	2.1	26	85	0	72	31	44	0	24	1.54
29462243--29462309	14	4.9	14	78	7	66	34	41	0	23	1.55
29462260--29462309	7	7.4	7	80	8	50	36	42	0	22	1.54
29462332--29462364	14	2.3	15	94	5	59	36	33	0	30	1.58
29462930--29463735	146	5.5	145	94	1	1389	24	16	14	43	1.86
29463731--29463899	73	2.3	72	85	4	223	26	23	23	26	2.00
29463967--29463992	12	2.2	12	100	0	52	46	30	15	7	1.74
29473569--29473882	22	14.2	21	78	8	304	40	18	11	28	1.86
29473578--29473885	66	4.7	66	85	0	418	40	18	11	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29474711--29474819	44	2.5	44	86	5	143	30	26	19	23	1.98
29474679--29474819	42	3.3	42	82	5	140	30	26	18	24	1.98
29477466--29478107	115	5.6	113	77	7	552	32	18	21	27	1.97
29477465--29478119	230	2.9	224	80	6	730	31	18	21	27	1.97
29478646--29478684	21	1.9	21	94	5	71	20	2	35	41	1.66
29479490--29479556	23	2.9	23	79	16	75	19	38	1	40	1.61
29481075--29481107	15	2.2	15	100	0	66	39	0	6	54	1.25
29481056--29481167	45	2.6	43	86	2	152	37	4	7	50	1.50
29481275--29481341	17	4.2	17	79	14	88	34	5	8	50	1.58
29481401--29481449	24	2.0	24	88	0	71	48	16	2	32	1.57
29481468--29481678	9	24.8	9	71	12	79	49	20	1	27	1.59
29481507--29481678	16	10.1	17	78	12	151	47	22	1	29	1.61
29481507--29481689	25	7.2	25	85	4	217	47	21	1	29	1.60
29487152--29487215	21	3.0	21	93	0	110	31	12	46	9	1.73
29487652--29487946	85	3.5	84	80	4	326	25	23	19	31	1.98
29487652--29487965	43	7.3	43	82	4	327	26	23	19	30	1.98
29488692--29488720	15	1.9	15	100	0	58	41	6	10	41	1.66
29491846--29491875	11	2.6	12	94	5	53	40	0	0	60	0.97
29491972--29492059	44	2.0	44	95	0	158	44	17	23	14	1.86
29496918--29496980	9	6.8	9	82	7	81	33	1	41	23	1.64
29496918--29496980	19	3.4	19	86	2	92	33	1	41	23	1.64
29497234--29497292	29	2.1	29	83	3	75	40	16	11	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29499495--29499606	56	2.0	56	98	0	215	29	17	33	19	1.95
29502064--29502118	20	2.4	25	77	22	68	58	5	5	30	1.44
29502821--29502851	14	2.2	14	94	0	53	77	3	12	6	1.08
29507011--29507062	27	2.0	26	84	3	68	53	0	0	46	1.00
29507866--29508000	40	3.3	41	85	2	175	34	2	0	62	1.16
29507900--29507974	18	4.0	17	71	20	60	36	1	0	62	1.04
29507876--29507985	11	10.5	11	70	22	69	37	3	0	59	1.15
29508356--29508399	14	2.8	16	80	16	56	52	0	0	47	1.00
29508993--29509044	24	2.2	24	92	0	86	55	7	1	34	1.39
29510955--29511006	24	2.2	24	89	0	77	55	9	1	32	1.43
29512738--29512978	43	5.6	43	83	2	270	31	24	18	26	1.98
29512742--29512977	129	1.8	129	86	3	341	31	23	17	26	1.97
29515748--29515819	31	2.3	32	86	9	96	36	0	2	61	1.11
29521740--29521804	25	2.6	25	82	7	69	20	15	7	56	1.63
29522756--29522838	3	27.7	3	96	0	148	68	0	30	1	0.97
29523997--29524111	50	2.3	50	80	0	122	25	21	24	28	1.99
29524184--29524450	50	5.3	50	66	11	152	29	19	25	25	1.99
29524192--29524700	100	5.1	100	90	0	705	29	20	22	27	1.98
29524242--29524601	50	7.2	50	65	5	197	30	20	22	26	1.98
29524492--29524648	50	3.1	50	64	7	129	30	18	22	28	1.97
29524707--29525005	44	6.9	44	73	11	231	28	19	24	28	1.98
29526518--29526587	33	2.2	32	84	2	86	34	0	2	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29526525--29526654	8	16.1	8	65	12	52	35	1	4	58	1.28
29528387--29528748	9	38.6	9	73	12	210	33	1	19	44	1.62
29531547--29531609	7	8.6	7	74	10	54	47	31	0	20	1.51
29531555--29531641	8	11.5	8	70	20	53	49	27	0	22	1.50
29531547--29531624	22	3.5	22	82	6	86	48	29	0	21	1.50
29531547--29531632	30	2.9	29	86	8	111	48	29	0	22	1.50
29531950--29532084	40	3.4	40	81	5	175	26	19	20	34	1.96
29531932--29532116	80	2.3	80	82	2	221	25	20	21	31	1.98
29531941--29532116	40	4.4	40	78	6	153	27	20	21	31	1.98
29532166--29532272	40	2.7	40	83	0	124	30	22	15	30	1.95
29532352--29532516	40	4.1	40	71	3	134	24	22	19	33	1.97
29533567--29533622	27	2.2	25	79	14	62	23	5	5	66	1.34
29534368--29534442	29	2.5	30	80	4	80	21	13	16	49	1.79
29535416--29535565	75	2.0	75	100	0	300	34	12	13	40	1.81
29535879--29535909	16	1.9	16	93	0	53	22	0	38	38	1.54
29536929--29536995	21	3.0	21	70	19	64	47	2	5	43	1.43
29536910--29536995	45	1.9	45	88	4	129	48	3	5	41	1.44
29540421--29540502	28	3.0	28	92	1	130	36	10	24	28	1.89
29540426--29540575	27	5.5	27	79	7	128	36	14	22	27	1.92
29541647--29541740	46	2.0	46	91	0	152	40	6	14	38	1.72
29541948--29542064	28	4.2	27	81	5	126	21	18	4	55	1.59
29544825--29545131	154	2.0	154	95	0	551	35	15	20	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29546044--29546085	19	2.2	19	86	0	57	4	26	0	69	1.08
29550035--29550059	13	1.9	13	100	0	50	40	16	0	44	1.47
29551697--29551731	18	1.9	18	94	0	61	65	17	2	14	1.38
29551743--29551768	7	3.7	7	100	0	52	73	0	0	26	0.84
29554977--29555008	17	1.9	17	93	6	57	46	9	0	43	1.35
29557505--29557594	39	2.3	39	82	0	108	35	15	31	17	1.92
29560145--29560202	27	2.1	27	87	6	82	25	31	20	22	1.98
29560161--29560246	27	3.2	27	74	9	68	25	26	22	25	2.00
29568329--29568410	8	10.0	8	81	6	85	45	1	0	53	1.08
29568323--29568410	17	5.3	17	78	9	83	45	1	0	53	1.07
29568652--29568975	130	2.5	130	89	1	479	33	7	17	41	1.77
29572049--29572203	52	3.0	52	85	6	208	38	13	16	31	1.88
29572243--29572284	20	2.2	19	83	12	50	59	4	2	33	1.31
29572243--29572285	21	2.2	19	83	8	50	60	4	2	32	1.30
29572432--29572581	57	2.7	56	83	5	171	26	7	2	63	1.34
29574291--29574327	7	5.3	7	90	0	56	45	0	35	18	1.50
29586455--29586496	19	2.4	18	88	11	61	40	0	40	19	1.51
29591760--29591812	23	2.4	22	76	20	56	9	18	1	69	1.25
29595853--29595920	34	2.0	35	88	2	102	55	7	7	29	1.54
29596330--29596524	43	4.5	43	79	3	205	26	28	16	28	1.97
29596784--29596874	43	2.1	42	84	4	119	43	10	10	34	1.75
29603714--29603759	20	2.2	21	84	3	58	30	4	19	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29618907--29619042	68	2.0	67	84	4	175	37	17	22	22	1.94
29618973--29619289	40	7.9	40	81	1	341	32	16	27	23	1.95
29618974--29619247	120	2.3	120	88	1	397	32	17	27	22	1.96
29622293--29622469	95	1.9	95	86	2	257	36	17	14	31	1.90
29623754--29623809	22	2.6	21	76	18	60	69	5	1	23	1.18
29629207--29629249	19	2.3	19	95	0	77	46	6	23	23	1.76
29630698--29631084	191	2.0	192	98	0	749	33	17	14	33	1.91
29631332--29631410	38	2.1	38	100	0	158	18	7	31	41	1.79
29631343--29631403	19	3.2	19	65	17	54	18	9	29	42	1.82
29635195--29635772	190	3.0	194	87	2	858	46	13	15	24	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230