genome.fa.s19.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  121  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35217368--35217489	23	5.3	23	81	3	156	31	24	19	23	1.98
35217368--35217489	46	2.7	46	90	0	181	31	24	19	23	1.98
35232789--35233007	108	2.0	108	96	0	402	35	12	13	38	1.83
35234826--35234881	28	2.0	28	100	0	112	46	7	7	39	1.59
35241431--35241477	23	2.1	22	92	4	76	31	17	25	25	1.97
35242241--35242286	16	2.6	17	80	19	51	45	0	32	21	1.52
35242638--35242674	9	4.1	9	89	0	56	32	10	10	45	1.74
35242726--35242765	9	4.4	9	93	0	71	40	22	12	25	1.89
35242767--35242914	74	2.0	71	92	3	242	22	19	14	43	1.87
35246446--35246488	22	1.9	23	85	4	61	34	9	2	53	1.46
35257625--35257696	26	2.8	26	85	4	83	30	19	26	23	1.98
35258315--35258484	43	4.0	42	80	6	182	31	26	15	26	1.96
35262290--35262371	23	3.6	23	78	15	98	39	0	2	58	1.11
35262345--35262384	16	2.6	15	84	7	53	35	0	0	65	0.93
35262324--35262417	22	4.5	22	67	23	69	39	1	0	59	1.04
35262464--35262530	22	3.2	22	85	10	79	41	0	1	56	1.08
35268278--35268379	30	3.4	30	76	2	107	23	21	24	30	1.99
35270686--35270745	23	2.5	24	91	2	95	26	5	31	36	1.78
35274897--35274951	19	2.8	20	81	13	60	7	18	1	72	1.16
35276698--35276722	13	1.9	13	100	0	50	56	36	0	8	1.29
35277448--35277508	23	2.6	24	87	10	90	27	4	31	36	1.78
35280241--35280289	15	3.5	15	79	17	52	57	2	0	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35280266--35280360	22	4.5	21	72	18	81	57	1	0	41	1.05
35280303--35280360	23	2.5	22	83	5	62	60	1	0	37	1.07
35280258--35280357	38	2.7	35	77	18	105	57	2	0	41	1.10
35280416--35280441	12	2.2	12	100	0	52	57	0	0	42	0.98
35280407--35280480	21	3.6	20	80	14	80	55	1	0	43	1.08
35280388--35280510	54	2.3	55	77	17	132	54	1	0	43	1.10
35280459--35280494	13	2.7	13	91	4	54	63	2	0	33	1.08
35280445--35280517	34	2.1	35	87	7	105	61	2	0	35	1.10
35280474--35280517	23	1.9	22	82	17	54	59	2	0	38	1.10
35280570--35280636	24	2.8	23	80	6	80	77	4	5	11	1.09
35282998--35283064	9	7.4	9	93	0	116	44	22	8	23	1.81
35283167--35283210	18	2.4	18	88	0	61	13	2	43	40	1.57
35287633--35287668	17	2.1	17	89	5	54	19	2	11	66	1.35
35287759--35287852	47	2.0	49	91	4	156	40	4	6	48	1.48
35292321--35292354	16	2.1	16	100	0	68	11	17	11	58	1.62
35296998--35297040	21	2.0	21	86	8	61	34	0	6	58	1.25
35297056--35297105	20	2.4	22	93	6	86	48	2	2	48	1.24
35297068--35297106	10	3.9	10	82	0	51	46	0	0	53	1.00
35297277--35297383	46	2.4	44	81	6	117	37	24	7	30	1.83
35298370--35298435	28	2.4	28	97	0	123	40	10	0	48	1.38
35298428--35298464	19	1.9	19	88	0	56	81	8	2	8	0.97
35298493--35298569	27	2.9	27	90	0	118	25	20	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35299150--35299233	18	4.7	18	72	10	64	34	14	1	50	1.51
35299142--35299226	35	2.4	37	86	8	129	37	14	1	47	1.52
35299304--35299468	82	2.0	82	97	0	312	38	7	9	44	1.65
35299549--35299614	19	3.5	19	79	4	89	50	1	10	37	1.47
35300010--35300072	26	2.4	27	91	2	110	50	0	7	41	1.31
35305773--35305800	3	9.3	3	100	0	56	67	32	0	0	0.91
35311833--35311879	11	3.8	13	88	8	55	70	2	8	19	1.24
35311846--35311879	11	2.9	12	91	8	61	73	0	8	17	1.08
35311850--35311887	11	3.6	11	93	6	62	81	0	7	10	0.87
35320648--35320676	12	2.3	13	94	5	51	68	0	0	31	0.89
35331037--35331070	6	5.7	6	89	0	50	67	14	5	11	1.39
35331492--35331517	13	2.0	13	100	0	52	69	0	15	15	1.20
35332746--35333338	87	6.8	87	90	0	920	30	22	22	24	1.99
35332746--35333338	259	2.3	261	91	0	938	30	22	22	24	1.99
35333503--35333704	44	4.7	42	71	9	131	31	21	19	27	1.97
35333543--35333732	44	4.5	41	71	10	139	28	24	18	27	1.98
35333457--35333739	129	2.2	128	90	1	433	31	22	19	26	1.98
35341265--35341298	17	2.0	17	88	0	50	47	8	2	41	1.50
35345094--35345276	98	1.9	98	91	2	305	30	14	16	38	1.88
35347906--35347938	14	2.4	14	94	0	57	36	15	9	39	1.79
35350009--35350052	21	2.0	22	86	4	63	77	4	13	4	1.08
35351313--35351357	21	2.1	21	87	0	63	17	31	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35351660--35351730	35	2.0	35	94	0	124	46	1	15	36	1.55
35353919--35353951	17	1.9	17	100	0	66	18	30	3	48	1.63
35356590--35356638	20	2.5	19	76	6	53	24	4	10	61	1.45
35357120--35357375	41	6.2	40	84	8	277	19	25	23	31	1.98
35357120--35357375	82	3.1	82	84	3	327	19	25	23	31	1.98
35357161--35357416	123	2.1	124	79	6	270	23	25	23	28	1.99
35358521--35358769	74	3.4	73	93	1	417	27	18	20	34	1.95
35361620--35361655	15	2.5	15	90	4	56	11	16	8	63	1.49
35362270--35362453	43	4.2	43	76	16	171	46	12	1	39	1.51
35362314--35362448	16	8.7	15	74	21	111	46	12	1	39	1.51
35362275--35362459	93	2.0	93	93	2	318	46	12	2	38	1.55
35362398--35362453	9	6.8	9	73	19	59	48	16	0	35	1.46
35362314--35362448	31	4.4	31	71	25	115	46	12	1	39	1.51
35362390--35362476	40	2.2	40	76	15	92	52	13	1	32	1.48
35367972--35368118	66	2.2	66	87	4	208	40	18	27	13	1.88
35368100--35368158	21	2.8	21	86	0	91	35	16	42	5	1.71
35368518--35368938	43	9.8	43	87	0	583	21	20	30	27	1.98
35370876--35370942	23	3.0	22	69	6	62	11	28	23	35	1.91
35374957--35375013	29	2.0	29	82	6	71	31	3	31	33	1.75
35378790--35378872	41	2.0	41	97	0	157	25	20	18	36	1.95
35378787--35378886	41	2.7	35	78	16	119	25	21	18	36	1.95
35386300--35386511	33	6.2	33	68	11	95	26	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35387697--35387754	29	2.0	28	80	9	64	46	18	0	34	1.50
35391044--35391077	8	4.1	8	85	7	50	61	0	0	38	0.96
35391044--35391077	17	2.1	16	88	5	50	61	0	0	38	0.96
35393199--35393305	42	2.5	43	83	4	119	34	28	15	21	1.94
35397098--35397145	23	2.0	24	84	8	62	25	8	8	58	1.55
35397252--35397304	20	2.5	23	82	14	69	35	0	0	64	0.94
35397835--35397878	21	2.1	21	87	8	63	38	43	0	18	1.50
35398382--35398430	15	3.3	15	82	8	64	46	30	0	22	1.52
35398770--35398877	40	2.7	40	91	2	173	25	23	22	29	1.99
35398897--35399076	94	1.9	93	89	3	281	21	21	22	34	1.97
35399007--35399116	39	2.8	39	88	2	159	22	24	25	27	2.00
35399144--35399231	40	2.2	40	93	0	149	23	25	21	29	1.99
35400311--35400354	18	2.3	20	88	11	67	59	0	4	36	1.18
35405206--35405334	40	3.2	39	84	8	170	29	20	21	27	1.98
35405655--35405748	7	13.6	7	83	4	93	15	1	32	50	1.52
35413727--35413778	26	2.0	26	88	7	79	15	19	25	40	1.90
35413789--35413847	25	2.4	25	80	5	66	27	28	15	28	1.96
35413805--35413856	25	2.1	25	85	7	70	25	28	15	30	1.96
35415161--35415205	23	2.0	23	100	0	90	31	26	24	17	1.97
35415293--35415321	8	3.6	8	100	0	58	34	27	13	24	1.93
35421442--35421709	67	4.0	67	86	3	353	22	23	15	39	1.92
35429866--35430283	40	10.6	40	92	3	706	27	20	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35429864--35430290	193	2.2	193	91	3	642	27	19	27	24	1.99
35433856--35434077	117	1.9	117	88	1	338	43	18	7	30	1.77
35435044--35435147	40	2.6	40	86	4	140	36	25	22	16	1.94
35435202--35435396	41	4.8	41	94	0	311	21	21	30	27	1.98
35435853--35435901	14	3.4	14	80	8	55	26	0	40	32	1.56
35436034--35436085	21	2.4	21	83	3	59	28	0	40	30	1.57
35436052--35436091	21	1.9	21	84	0	53	30	2	37	30	1.71
35436902--35436934	13	2.4	14	90	5	50	63	0	3	33	1.10
35437547--35437594	3	15.7	3	95	4	87	33	0	0	66	0.92
35445486--35445781	146	2.0	146	100	0	592	29	16	19	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230