genome.fa.s19.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  143  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42071265--42071303	12	3.2	12	85	0	51	20	23	5	51	1.67
42071552--42071742	50	3.8	50	84	2	195	22	30	20	26	1.98
42082241--42082316	37	2.1	37	92	0	125	65	2	14	17	1.37
42084619--42084713	25	3.8	25	81	5	120	23	21	26	29	1.99
42087397--42087434	10	3.5	11	86	13	53	34	0	2	63	1.09
42088770--42088864	46	2.1	46	97	0	181	50	14	20	14	1.78
42095337--42095633	26	11.5	26	91	0	407	38	20	15	24	1.92
42095337--42095633	78	3.8	78	90	2	454	38	20	15	24	1.92
42095817--42095881	27	2.4	27	87	7	89	18	23	23	35	1.96
42096026--42096104	28	2.8	28	74	0	77	26	17	22	32	1.96
42097084--42097132	6	8.0	6	82	13	64	2	16	0	81	0.78
42097091--42097141	25	2.1	24	92	3	84	1	15	0	82	0.76
42097122--42097212	9	10.6	8	84	6	83	9	2	7	80	0.99
42097138--42097202	9	7.5	8	94	5	85	10	0	10	78	0.97
42097138--42097212	18	4.2	18	96	1	134	10	0	9	80	0.92
42097917--42097953	17	2.1	18	90	5	58	45	0	24	29	1.53
42100843--42100873	16	1.9	16	93	0	53	38	0	38	22	1.54
42101107--42101142	18	2.0	18	100	0	72	61	0	0	38	0.96
42101061--42101193	55	2.4	54	79	13	135	50	4	0	44	1.27
42101424--42101486	20	3.2	20	100	0	126	38	4	4	52	1.44
42101686--42101768	26	3.2	26	63	13	62	49	2	4	43	1.37
42101614--42101805	52	3.8	52	89	3	295	48	5	3	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42101901--42101935	18	1.9	18	88	0	52	65	11	2	20	1.37
42113898--42114332	89	4.9	89	83	1	503	28	25	22	23	1.99
42114107--42114251	44	3.3	44	68	11	116	28	27	23	20	1.99
42114152--42114296	45	3.2	45	68	9	116	26	23	26	23	2.00
42116424--42116466	12	3.5	12	83	3	50	27	6	0	65	1.18
42119338--42119385	21	2.3	21	88	0	69	25	10	52	12	1.71
42120782--42120820	9	4.1	9	83	9	51	53	0	0	46	1.00
42128495--42128566	37	1.9	38	83	8	94	65	4	1	29	1.20
42131258--42131305	21	2.3	21	88	0	69	25	10	52	12	1.71
42140399--42140470	37	1.9	38	83	8	94	65	4	1	29	1.20
42143167--42143214	21	2.3	21	88	0	69	25	10	52	12	1.71
42166529--42166553	13	1.9	13	100	0	50	8	0	24	68	1.16
42168340--42168445	41	2.6	41	92	0	167	21	21	25	31	1.98
42181448--42181672	39	5.7	39	68	18	135	53	4	0	42	1.23
42181488--42181539	22	2.4	21	79	17	54	55	5	0	38	1.24
42181553--42181601	18	2.8	17	87	9	71	61	0	0	38	0.96
42181452--42181706	122	2.1	121	93	3	433	53	3	0	42	1.21
42181884--42181940	25	2.3	25	82	11	64	63	1	3	31	1.22
42191959--42192002	20	2.3	20	88	7	65	31	0	0	68	0.90
42191950--42191999	24	2.0	25	84	11	66	30	4	0	66	1.10
42192719--42192802	31	2.7	31	80	7	107	42	14	1	41	1.53
42199533--42199633	43	2.3	43	81	3	123	24	18	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42199566--42199648	43	1.9	43	85	0	112	26	15	25	32	1.96
42204303--42204351	25	2.0	25	87	0	71	59	0	30	10	1.31
42205611--42205644	11	3.2	10	84	15	50	61	0	2	35	1.11
42206700--42206802	52	2.0	52	96	0	188	17	20	23	38	1.93
42207721--42207776	25	2.2	24	76	17	60	60	1	1	35	1.17
42215879--42215936	28	2.0	31	83	10	77	43	0	6	50	1.29
42218066--42218107	20	2.0	20	82	13	50	26	28	0	45	1.54
42229433--42229484	23	2.3	23	89	0	77	40	21	9	28	1.84
42237417--42237514	50	2.0	50	89	0	151	32	16	10	40	1.82
42249814--42249885	29	2.4	29	81	4	81	44	18	13	23	1.85
42250795--42250865	35	2.0	35	100	0	142	28	22	11	38	1.88
42251818--42251911	46	2.0	46	89	0	143	27	14	14	42	1.86
42252818--42252936	60	2.0	60	91	0	193	52	13	0	33	1.47
42253077--42253144	29	2.3	30	80	10	77	55	4	0	39	1.20
42254484--42254527	13	3.4	13	75	12	54	31	18	11	38	1.86
42254478--42254527	26	1.9	26	95	0	91	32	18	12	38	1.87
42255301--42255349	24	2.0	24	92	0	80	36	18	10	34	1.85
42255666--42255767	51	2.0	52	86	5	145	26	22	16	34	1.95
42257950--42258010	20	3.2	18	81	6	68	29	1	3	65	1.18
42267832--42267861	15	1.9	16	93	6	53	0	10	3	86	0.67
42272433--42272474	21	2.0	21	85	4	57	64	4	2	28	1.26
42297351--42297448	3	32.7	3	97	0	187	1	0	31	67	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42305529--42305607	29	2.7	29	82	5	97	26	32	16	24	1.96
42307514--42307591	36	2.1	37	88	2	113	25	32	17	24	1.97
42307709--42308030	47	6.7	47	94	1	518	30	29	8	31	1.86
42324599--42324644	18	2.4	18	85	10	56	28	26	17	28	1.98
42326606--42326661	23	2.4	23	79	5	60	35	7	1	55	1.38
42328385--42328535	28	5.2	28	70	19	105	48	16	14	20	1.81
42328376--42328535	61	2.7	61	91	6	251	49	16	13	20	1.79
42330769--42330836	18	3.8	18	78	7	59	54	1	1	42	1.18
42331914--42331942	13	2.1	14	93	6	51	65	0	0	34	0.93
42332896--42332951	14	3.7	15	75	13	53	35	0	5	58	1.21
42335403--42335462	30	2.0	30	100	0	120	50	10	3	36	1.53
42338615--42338837	39	5.7	40	83	8	248	26	22	26	24	2.00
42338615--42338837	79	2.8	80	81	12	255	26	22	26	24	2.00
42338688--42338869	79	2.3	79	81	9	196	27	21	26	24	1.99
42345010--42345034	13	1.9	13	100	0	50	88	4	8	0	0.64
42346164--42346373	39	5.3	39	90	2	307	26	22	27	24	2.00
42346112--42346373	39	6.7	38	86	5	280	26	22	27	23	2.00
42348518--42348563	24	1.9	24	86	8	67	47	10	4	36	1.58
42350937--42351062	30	4.2	30	79	5	148	41	19	9	30	1.83
42350939--42351052	60	1.9	59	89	1	174	40	20	9	29	1.84
42351007--42351073	29	2.2	29	84	5	80	47	17	7	26	1.74
42359928--42359972	21	2.2	20	84	4	54	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42359926--42359971	20	2.3	19	82	10	56	47	0	2	50	1.13
42370523--42370568	19	2.4	19	85	7	58	23	17	2	56	1.52
42371659--42371756	37	2.6	37	80	4	108	30	13	18	37	1.89
42376089--42376250	41	3.9	41	85	0	198	22	17	22	37	1.94
42383122--42383173	28	1.9	26	88	7	77	48	0	7	44	1.31
42384078--42384235	41	3.9	41	85	0	190	19	20	24	36	1.95
42384078--42384235	82	1.9	82	85	0	217	19	20	24	36	1.95
42402173--42402340	40	4.2	40	80	9	139	27	27	20	24	1.99
42402210--42402340	40	3.3	39	86	4	181	29	27	19	23	1.99
42402173--42402391	80	2.8	79	78	11	214	27	27	20	24	1.99
42410075--42410242	40	4.2	40	82	8	148	27	27	20	24	1.99
42410110--42410295	80	2.3	80	83	9	229	27	27	20	23	1.99
42410112--42410295	40	4.6	40	83	7	205	27	27	21	23	1.99
42419052--42419094	19	2.3	18	84	7	59	74	2	0	23	0.93
42422170--42422234	25	2.6	25	83	11	73	49	0	1	49	1.10
42422437--42422497	23	2.7	22	69	18	54	31	9	4	54	1.55
42422648--42422679	6	5.3	6	100	0	64	84	0	15	0	0.63
42433642--42433720	30	2.7	30	84	5	90	43	26	18	11	1.84
42438049--42438227	27	6.6	27	83	3	189	26	16	28	28	1.97
42438050--42438227	54	3.3	55	83	5	218	26	15	28	28	1.96
42438051--42438206	82	1.9	81	86	3	224	26	16	28	28	1.97
42438047--42438227	82	2.2	81	82	2	220	27	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42446068--42446184	49	2.4	48	80	18	127	29	16	26	27	1.97
42446072--42446184	25	4.6	25	80	8	101	29	15	26	28	1.96
42446117--42446184	24	2.7	25	86	6	93	27	19	25	27	1.98
42446091--42446201	25	4.4	25	82	8	104	29	17	25	27	1.97
42446143--42446210	25	2.8	25	86	6	86	27	16	26	29	1.97
42458559--42458737	27	6.6	27	83	3	189	26	16	28	28	1.97
42458560--42458737	54	3.3	55	83	5	218	26	15	28	28	1.96
42458561--42458716	82	1.9	81	86	3	224	26	16	28	28	1.97
42458557--42458737	82	2.2	81	82	2	220	27	16	28	28	1.97
42460611--42460639	9	3.3	9	95	4	51	68	10	0	20	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230