genome.fa.s19.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  129  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37645106--37645191	29	2.8	32	77	10	97	19	15	26	38	1.91
37645241--37645313	30	2.4	30	88	0	101	19	12	27	41	1.87
37645239--37645389	76	2.0	76	97	0	284	21	12	26	39	1.89
37645327--37645431	30	3.5	30	88	0	147	20	14	24	40	1.90
37646635--37646675	20	2.0	22	85	9	59	26	19	4	48	1.69
37647034--37647101	33	2.0	33	85	8	91	39	35	0	25	1.56
37650577--37650653	14	5.0	15	72	20	61	41	15	9	33	1.79
37650593--37650632	20	2.0	20	90	0	62	50	12	10	27	1.72
37651345--37651389	23	2.0	23	95	0	81	28	26	20	24	1.99
37655407--37655618	54	4.0	54	76	4	234	34	14	24	26	1.94
37655398--37655549	51	2.9	52	83	3	207	33	14	24	27	1.94
37655398--37655602	105	2.0	105	85	0	275	35	15	22	27	1.94
37655865--37655915	24	2.1	25	92	3	86	54	35	3	5	1.43
37656937--37656966	11	2.6	12	94	5	53	36	0	3	60	1.14
37656917--37656966	23	2.2	23	82	7	57	38	0	2	60	1.09
37659269--37659448	91	2.0	91	95	0	324	37	15	24	22	1.92
37661111--37661165	27	2.0	27	82	6	67	74	7	5	12	1.20
37661121--37661197	23	3.5	21	72	10	64	74	7	7	10	1.23
37662151--37662189	7	5.7	7	87	6	62	66	0	17	15	1.25
37663434--37665938	129	18.9	129	92	3	3434	32	17	21	29	1.96
37665111--37665953	142	6.0	142	92	1	1372	33	16	20	29	1.95
37665958--37666117	85	1.9	85	80	5	189	29	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37665958--37666164	44	4.8	43	71	7	141	30	19	20	28	1.97
37666043--37666243	44	4.7	44	69	11	128	32	20	20	26	1.97
37666636--37666686	24	2.1	25	88	3	77	54	37	1	5	1.36
37667712--37667741	11	2.6	12	94	5	53	36	0	3	60	1.14
37667846--37667924	28	2.8	27	70	16	70	37	10	3	48	1.55
37670358--37670396	20	1.9	21	84	5	53	46	0	12	41	1.42
37674110--37674143	15	2.3	15	100	0	68	26	50	11	11	1.73
37677162--37677339	27	6.6	27	83	3	196	29	28	15	26	1.96
37677183--37677338	82	1.9	81	86	3	224	28	28	16	26	1.97
37679968--37680177	40	5.3	40	88	0	269	24	30	21	23	1.99
37679966--37680229	120	2.2	118	77	4	269	24	29	21	23	1.99
37684768--37684904	36	3.9	34	76	16	109	54	1	8	35	1.39
37684912--37684990	31	2.6	30	80	5	79	45	0	12	41	1.42
37690091--37690216	50	2.5	50	96	0	225	36	11	25	26	1.90
37690090--37690171	27	3.2	27	61	25	68	35	10	26	26	1.90
37693277--37697504	847	5.0	847	99	0	8316	28	23	16	31	1.96
37698015--37698192	27	6.6	27	78	3	97	28	28	15	26	1.96
37698015--37698192	54	3.3	55	77	10	186	28	28	15	26	1.96
37707492--37707525	18	1.9	18	88	5	52	61	14	0	23	1.33
37726480--37726583	54	1.9	54	84	3	138	18	32	19	29	1.95
37728215--37728254	20	2.1	19	85	4	53	30	15	0	55	1.41
37732417--37732467	26	1.9	27	92	4	86	31	17	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37732517--37732547	16	1.9	16	100	0	62	35	25	12	25	1.92
37734580--37734804	40	5.7	40	86	5	296	24	22	28	25	2.00
37734580--37734837	119	2.2	119	81	6	283	25	21	27	24	1.99
37742629--37742853	40	5.7	40	85	5	278	24	21	27	26	1.99
37742629--37742886	80	3.2	80	81	7	224	25	21	27	25	1.99
37742629--37742886	119	2.2	119	79	6	265	25	21	27	25	1.99
37744748--37744780	17	1.9	17	100	0	66	42	6	12	39	1.67
37744861--37745032	43	4.0	43	78	11	167	30	28	16	24	1.97
37752038--37752228	50	3.8	50	83	0	220	28	20	28	22	1.98
37757630--37757659	15	2.1	15	93	6	53	76	0	20	3	0.92
37765168--37765331	43	3.8	43	75	12	140	32	25	16	26	1.96
37767373--37767417	20	2.2	20	96	4	81	28	17	8	44	1.79
37767485--37767549	27	2.4	27	84	0	85	38	21	12	27	1.89
37773873--37773928	15	3.7	15	73	19	53	16	23	0	60	1.35
37773845--37773923	32	2.5	32	87	4	106	12	25	1	60	1.40
37791199--37791228	14	2.1	15	93	6	53	43	30	6	20	1.77
37799252--37799428	27	6.5	27	82	1	165	26	14	28	30	1.95
37799248--37799428	82	2.2	81	80	2	202	27	14	27	30	1.95
37807257--37807432	27	6.5	26	81	3	138	26	14	27	30	1.95
37807253--37807432	82	2.2	81	79	3	193	27	15	27	30	1.96
37808812--37808884	27	2.8	25	84	8	92	39	17	2	39	1.64
37811053--37811175	50	2.4	50	79	5	140	37	14	13	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37811265--37811299	19	1.9	17	88	11	52	54	5	8	31	1.54
37813107--37813166	16	3.6	16	82	11	59	10	23	1	65	1.32
37813107--37813150	18	2.5	17	75	7	52	9	22	2	65	1.32
37813146--37813200	20	2.7	20	75	10	58	10	21	1	65	1.33
37815290--37815410	50	2.4	52	81	5	149	38	13	14	33	1.84
37817975--37818031	27	2.1	27	96	0	105	36	38	10	14	1.80
37824916--37824965	17	2.9	17	81	0	64	10	26	0	64	1.25
37824916--37824981	35	1.9	34	84	3	87	9	28	0	62	1.26
37828571--37828648	29	2.7	28	84	11	104	25	15	30	28	1.96
37828601--37829102	174	2.9	174	97	0	941	29	14	24	31	1.94
37841861--37841936	29	2.6	28	84	12	93	28	30	15	25	1.96
37844558--37844639	18	4.6	18	92	3	114	18	32	29	19	1.95
37861803--37861859	28	2.0	28	89	0	87	22	14	22	40	1.90
37874072--37874139	34	2.0	34	94	0	118	39	19	16	25	1.91
37875361--37875420	22	2.7	21	85	10	84	0	15	11	73	1.10
37875358--37875409	13	4.4	12	77	20	56	0	15	9	75	1.05
37875947--37876011	32	2.1	32	97	2	123	47	12	9	30	1.72
37876691--37876734	20	2.3	20	84	7	56	34	25	4	36	1.76
37877800--37877836	18	2.1	18	100	0	74	51	5	10	32	1.60
37879396--37879565	40	4.3	40	89	0	225	27	28	20	24	1.99
37879394--37879618	80	2.8	79	80	4	211	27	28	20	24	1.99
37879550--37879627	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37886038--37886094	23	2.5	23	86	13	82	12	38	8	40	1.74
37888624--37888662	18	2.1	19	85	4	53	30	10	20	38	1.86
37889239--37889319	17	4.7	16	71	25	51	37	3	3	55	1.35
37899023--37899200	27	6.6	27	82	3	196	26	15	28	29	1.96
37899024--37899179	82	1.9	81	86	3	224	26	16	28	28	1.97
37903426--37903472	2	23.5	2	95	0	85	2	48	0	48	1.13
37910804--37910992	5	37.8	5	92	0	297	39	2	19	38	1.65
37933544--37933586	22	1.9	23	90	4	70	37	32	4	25	1.77
37934728--37934858	62	2.1	62	90	2	201	32	12	28	26	1.93
37936617--37936650	15	2.3	15	89	0	50	35	29	32	2	1.73
37939550--37939680	62	2.1	62	90	2	201	32	12	28	26	1.93
37949008--37949047	21	1.9	21	85	10	55	10	20	2	67	1.31
37949064--37949111	21	2.3	21	79	10	55	8	27	2	62	1.35
37949871--37949967	30	3.2	30	75	2	97	28	25	15	29	1.96
37952722--37952765	22	2.0	22	95	0	79	25	36	4	34	1.76
37953103--37953138	15	2.5	15	95	4	65	77	0	11	11	0.99
37956524--37956561	15	2.6	14	88	12	51	76	0	18	5	0.97
37960683--37960735	21	2.5	21	90	3	79	33	33	1	30	1.69
37963272--37963332	20	3.0	20	75	17	63	31	26	9	32	1.89
37966194--37966258	20	3.3	19	73	16	51	38	16	21	23	1.93
37967524--37967557	18	1.9	18	88	5	52	8	35	2	52	1.47
37967640--37967671	15	2.1	16	94	5	57	6	21	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37968582--37968654	30	2.6	28	81	10	85	9	13	6	69	1.34
37968633--37968670	12	3.2	12	84	0	58	15	7	2	73	1.17
37970196--37970260	20	3.3	19	73	16	51	38	16	21	23	1.93
37970949--37971013	20	3.3	19	73	16	51	38	16	21	23	1.93
37973948--37973991	22	2.0	22	95	0	79	25	36	4	34	1.76
37976821--37976876	29	1.9	29	85	0	76	69	7	8	14	1.35
37976826--37976906	14	5.8	13	72	17	56	76	4	8	9	1.14
37976854--37976909	15	3.7	15	77	17	62	80	5	7	7	1.02
37976954--37976986	1	33.0	1	100	0	66	100	0	0	0	0.00
37977697--37977730	15	2.3	15	89	0	50	35	29	32	2	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230