genome.fa.s19.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  147  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43381675--43381744	22	3.3	22	64	28	60	38	15	11	34	1.84
43381646--43381751	42	2.5	42	98	1	203	40	14	12	33	1.83
43382955--43383010	12	4.4	12	76	12	58	16	23	0	60	1.35
43383057--43383089	12	2.8	12	95	4	59	24	15	15	45	1.84
43383160--43383203	20	2.2	20	84	12	54	0	18	4	77	0.94
43385079--43385135	20	2.8	20	81	2	69	24	12	35	28	1.91
43388768--43388810	12	3.6	12	87	0	59	13	20	2	62	1.42
43388904--43388960	17	3.9	15	79	20	50	3	21	3	71	1.15
43388919--43388960	14	3.1	13	86	10	57	2	21	2	73	1.06
43388925--43388960	13	2.6	14	91	4	56	2	19	2	75	1.06
43392071--43392412	47	7.2	47	91	2	540	31	9	30	28	1.88
43392071--43392412	95	3.6	94	92	2	540	31	9	30	28	1.88
43396158--43396204	20	2.3	21	71	10	53	38	19	21	21	1.94
43400342--43400376	12	2.9	12	82	0	52	45	2	5	45	1.41
43404579--43404676	30	3.3	30	72	4	90	27	26	16	29	1.97
43408146--43408191	10	4.5	10	81	5	56	15	23	19	41	1.89
43408143--43408191	21	2.4	20	89	3	71	14	22	20	42	1.88
43408453--43408549	30	3.2	30	76	2	97	29	27	14	27	1.95
43411188--43411218	12	2.6	12	100	0	62	45	12	16	25	1.83
43411221--43411255	18	1.9	18	88	0	52	68	0	14	17	1.21
43411243--43411302	30	2.0	31	83	9	79	58	3	25	13	1.50
43413508--43413604	30	3.2	31	73	5	101	27	28	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43415183--43415211	13	2.2	13	100	0	58	27	0	10	62	1.28
43417510--43417537	4	7.0	4	100	0	56	75	0	0	25	0.81
43418942--43418980	18	2.2	18	85	0	51	12	23	2	61	1.43
43425432--43425489	13	4.5	13	93	4	82	77	3	8	10	1.10
43436673--43436732	30	2.0	30	93	0	102	31	25	8	35	1.85
43443834--43443899	21	3.0	22	86	4	80	30	4	30	34	1.78
43447389--43447422	18	1.9	18	88	5	52	8	35	2	52	1.47
43447505--43447536	15	2.1	16	94	5	57	6	21	0	71	1.07
43448494--43448566	13	5.7	12	73	19	58	13	5	4	76	1.11
43448493--43448567	14	5.9	12	75	20	64	14	5	5	74	1.17
43448478--43448567	40	2.3	39	84	5	119	13	6	6	73	1.24
43448494--43448555	27	2.3	26	81	8	79	14	6	3	75	1.12
43452725--43452784	30	2.0	30	90	0	93	30	25	8	36	1.85
43457394--43457428	14	2.5	14	85	0	52	62	8	5	22	1.45
43458853--43458883	14	2.2	14	94	0	53	58	3	29	9	1.46
43460041--43460137	30	3.2	30	70	8	81	26	28	16	27	1.97
43461852--43461897	13	3.6	13	86	13	53	78	6	4	10	1.08
43461850--43461881	11	2.9	11	100	0	64	75	9	0	15	1.05
43461874--43461913	17	2.3	18	86	4	64	80	5	7	7	1.03
43462577--43462673	30	3.2	30	77	2	106	26	26	16	29	1.97
43479381--43479440	22	2.7	23	73	19	63	66	6	0	26	1.16
43479390--43479423	4	8.0	4	90	9	50	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43480823--43480861	18	2.2	18	85	0	51	15	23	2	58	1.49
43483189--43483248	22	2.7	23	73	19	63	66	6	0	26	1.16
43483198--43483231	4	8.0	4	90	9	50	73	2	0	23	0.97
43484770--43484834	20	3.3	19	73	16	51	38	16	21	23	1.93
43488179--43488219	18	2.3	18	87	4	57	7	12	7	73	1.25
43488224--43488276	14	3.6	14	76	18	54	16	5	3	73	1.17
43488255--43488286	11	2.6	13	90	9	50	9	3	6	81	0.97
43489901--43489965	20	3.3	19	73	16	51	38	16	21	23	1.93
43495654--43495713	22	2.7	23	73	19	63	66	6	0	26	1.16
43495663--43495696	4	8.0	4	90	9	50	73	2	0	23	0.97
43496752--43496848	30	3.2	30	73	2	97	27	15	27	28	1.96
43498687--43498734	14	3.4	14	85	0	60	18	31	6	43	1.75
43500619--43500701	30	2.7	30	81	9	89	13	22	1	62	1.37
43500652--43500707	18	3.1	18	76	5	51	7	19	1	71	1.18
43500677--43500701	12	2.1	12	100	0	50	8	16	0	76	1.02
43500704--43500734	12	2.6	12	100	0	62	25	16	12	45	1.83
43500782--43500838	5	11.0	5	75	20	55	3	17	1	77	1.00
43500782--43500838	16	3.7	14	82	15	60	3	17	1	77	1.00
43500782--43500849	21	3.2	21	76	15	61	2	17	2	76	1.04
43501702--43501749	15	3.3	15	73	5	53	29	0	27	43	1.55
43501696--43501739	14	3.1	14	74	6	52	27	0	34	38	1.57
43505026--43505070	14	3.3	14	84	6	65	48	13	0	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43505053--43505200	42	3.5	42	97	0	269	39	12	13	33	1.83
43508243--43508348	42	2.5	42	95	4	187	33	13	13	40	1.83
43508332--43508372	14	3.0	14	82	7	57	41	0	9	48	1.36
43509932--43510028	30	3.2	30	75	2	106	28	15	26	28	1.96
43512208--43512238	12	2.6	12	100	0	62	25	16	12	45	1.83
43512137--43512226	42	2.1	42	80	8	103	15	21	3	60	1.50
43512299--43512348	6	8.2	6	81	16	50	2	20	2	76	0.99
43512288--43512358	37	1.9	37	86	11	101	2	18	2	76	1.04
43512284--43512344	16	3.8	16	77	14	63	3	19	1	75	1.03
43513278--43513317	10	3.6	11	86	10	55	7	12	2	77	1.07
43513277--43513328	10	4.8	11	81	11	54	11	9	3	75	1.18
43515127--43515186	29	2.1	29	90	0	93	41	28	0	30	1.56
43515133--43515180	15	3.3	15	73	5	53	43	25	0	31	1.55
43517841--43517923	30	2.8	30	70	7	87	26	16	28	27	1.97
43521023--43521079	11	5.5	10	73	22	55	77	1	17	3	1.00
43521023--43521079	5	11.0	5	77	17	55	77	1	17	3	1.00
43521023--43521079	16	3.7	14	80	17	60	77	1	17	3	1.00
43521127--43521157	12	2.6	12	100	0	62	45	12	16	25	1.83
43523262--43523357	30	3.2	30	72	7	88	29	27	15	28	1.96
43523340--43523412	38	1.9	38	94	5	130	27	16	21	34	1.95
43525363--43525459	30	3.2	30	72	2	97	28	25	15	29	1.96
43527313--43527350	10	3.8	10	83	13	51	28	31	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43527312--43527349	20	1.9	20	94	0	67	28	34	18	18	1.95
43533725--43533830	48	2.2	47	83	12	128	15	24	1	58	1.47
43533762--43533890	18	7.4	17	68	20	61	17	27	3	52	1.59
43534856--43534891	10	3.8	9	89	10	54	2	8	2	86	0.77
43536349--43536395	20	2.3	20	85	0	67	21	12	36	29	1.91
43539008--43539055	14	3.4	14	85	0	60	43	6	31	18	1.75
43541962--43542044	30	2.7	30	80	9	80	13	21	1	63	1.35
43542047--43542077	12	2.6	12	89	0	53	22	16	16	45	1.85
43542125--43542181	5	11.0	5	75	20	55	3	17	1	77	1.00
43542125--43542181	16	3.7	14	82	15	60	3	17	1	77	1.00
43542125--43542192	21	3.2	21	76	15	61	2	17	2	76	1.04
43542614--43542711	30	3.3	30	70	7	83	27	27	16	28	1.97
43544741--43544787	13	3.6	13	74	8	51	21	6	2	70	1.20
43544741--43544789	24	2.0	25	88	8	73	22	6	4	67	1.30
43546338--43546384	20	2.3	20	85	0	67	29	36	12	21	1.91
43548934--43549062	18	7.4	17	66	20	61	52	3	27	17	1.59
43548994--43549099	48	2.2	47	83	12	128	58	1	24	15	1.47
43555554--43555600	20	2.3	20	85	0	67	29	36	12	21	1.91
43560413--43560441	14	2.1	14	100	0	58	72	6	6	13	1.26
43561154--43561187	15	2.3	15	89	0	50	35	29	32	2	1.73
43566811--43566851	15	2.7	16	74	11	50	7	26	0	65	1.18
43566958--43566996	15	2.4	15	87	12	51	10	20	2	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43569007--43569069	14	4.4	14	79	13	74	74	6	4	14	1.18
43569027--43569060	18	1.9	18	94	5	61	61	5	8	23	1.47
43569007--43569079	13	5.4	13	72	23	53	73	6	5	13	1.21
43569017--43569117	31	3.3	29	74	10	85	71	5	9	12	1.30
43569109--43569149	11	3.9	10	84	9	55	85	2	9	2	0.78
43569111--43569158	24	2.0	24	84	8	62	79	2	14	4	0.98
43570060--43570091	15	2.1	16	94	5	57	71	0	21	6	1.07
43570174--43570207	18	1.9	18	88	5	52	52	2	35	8	1.47
43573383--43573453	29	2.4	30	80	15	87	9	12	2	74	1.17
43573495--43573539	12	3.7	12	82	5	63	15	2	4	77	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230