Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  11  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3048617--3048831
107
2.0
106
85
4
290
31
16
17
33
1.93
3049185--3049243
21
2.9
21
97
2
111
54
15
5
25
1.61
3049325--3049767
159
2.8
152
76
12
409
31
11
6
50
1.64
3049743--3049767
13
1.9
13
100
0
50
32
8
4
56
1.47
3051364--3051491
49
2.6
49
82
2
139
33
24
13
28
1.93
3053203--3053400
41
4.8
41
92
0
315
33
28
19
18
1.95
3056510--3056611
18
5.6
18
67
18
59
0
30
0
68
0.96
3056522--3056633
31
3.7
29
74
12
102
0
29
0
68
1.01
3056510--3056599
36
2.4
36
83
9
101
0
31
1
67
0.98
3056588--3056627
4
9.5
4
84
10
53
2
20
0
77
0.88
3056895--3056964
9
7.6
9
84
6
86
37
32
7
22
1.82
3056894--3056964
18
3.8
18
81
7
97
38
32
7
22
1.81
3056971--3057030
17
3.4
17
70
17
50
50
13
1
35
1.52
3057045--3057107
17
3.4
17
72
19
63
52
14
3
30
1.57
3057057--3057122
22
3.2
22
69
20
70
46
16
6
30
1.71
3056959--3057122
37
4.2
40
83
11
202
46
15
4
32
1.67
3059918--3059973
17
3.5
16
92
7
96
55
0
10
33
1.35
3060163--3060195
15
2.2
15
100
0
66
51
0
12
36
1.39
3060178--3060272
42
2.2
43
88
7
140
41
4
16
37
1.68
3060250--3060297
25
1.9
25
100
0
96
35
6
25
33
1.81
3061996--3062029
14
2.3
15
90
5
52
17
0
2
79
0.86
3061945--3062047
38
2.8
36
71
21
95
20
1
10
66
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3066056--3066092
19
1.9
19
100
0
74
43
16
29
10
1.82
3073551--3073672
58
2.1
57
83
9
147
57
0
7
35
1.27
3073584--3073672
18
4.5
19
68
18
56
56
0
7
35
1.29
3077251--3077275
7
3.6
7
100
0
50
12
0
0
88
0.53
3077495--3077559
30
2.1
32
91
5
107
36
7
3
52
1.46
3081974--3082011
18
2.1
19
85
5
51
60
10
0
28
1.30
3083801--3083901
50
2.0
50
96
0
184
30
17
27
23
1.97
3088305--3089360
501
2.1
502
94
0
1864
24
17
20
37
1.94
3095938--3095971
4
8.0
4
90
9
50
23
0
2
73
0.97
3095921--3095980
22
2.7
22
73
19
61
26
0
6
66
1.16
3099745--3099778
4
8.0
4
90
9
50
23
0
2
73
0.97
3099728--3099787
22
2.7
22
73
19
61
26
0
6
66
1.16
3101698--3101722
4
6.2
4
100
0
50
52
24
0
24
1.48
3104917--3104963
21
2.2
22
88
3
69
23
19
36
21
1.95
3107254--3107303
21
2.5
20
81
12
57
74
0
6
20
1.03
3108100--3108143
21
2.1
21
87
8
63
59
2
0
38
1.10
3110948--3111069
58
2.1
57
83
9
147
57
0
7
35
1.27
3110981--3111077
18
4.9
19
68
17
63
55
0
7
37
1.27
3111209--3111283
30
2.6
28
78
14
80
45
2
12
40
1.55
3113543--3113589
6
7.7
6
92
2
76
14
12
0
72
1.13
3114399--3114444
11
3.9
11
81
15
56
10
4
0
84
0.75
3114405--3114476
18
3.9
18
73
10
56
12
2
6
77
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3114399--3114444
25
1.9
24
91
8
76
10
4
0
84
0.75
3114399--3114480
12
6.7
12
76
14
69
10
3
6
79
1.04
3119431--3119554
60
2.1
60
84
6
162
57
0
7
35
1.27
3119445--3119562
18
6.0
19
68
14
69
55
0
7
36
1.28
3122029--3122062
7
5.0
7
92
7
61
14
14
0
70
1.17
3122029--3122062
13
2.5
14
95
4
61
14
14
0
70
1.17
3122868--3122915
6
8.2
6
80
11
55
6
10
0
83
0.81
3122862--3122915
18
3.1
16
78
17
54
5
11
0
83
0.80
3122871--3122915
24
1.9
23
86
13
65
6
8
0
84
0.78
3126865--3126889
12
2.1
12
100
0
50
76
0
8
16
1.02
3127097--3127153
3
18.3
3
79
13
53
63
5
3
28
1.33
3127091--3127153
21
3.0
21
82
15
78
63
7
3
25
1.37
3128400--3128440
8
5.5
8
80
13
52
24
0
2
73
0.96
3128430--3128463
17
2.0
17
88
0
50
29
5
0
64
1.17
3128591--3128673
18
4.5
19
74
17
77
38
14
9
37
1.79
3128594--3128636
20
2.2
20
88
12
63
46
11
11
30
1.76
3128591--3128689
19
5.4
18
75
11
76
37
14
8
40
1.75
3128591--3128689
36
2.7
35
83
9
110
37
14
8
40
1.75
3128670--3128700
16
1.9
16
93
0
53
32
6
0
61
1.21
3149003--3149059
23
2.4
23
80
8
62
56
7
0
36
1.27
3149484--3149531
25
1.9
25
83
8
62
22
2
6
68
1.23
3152636--3152896
126
2.1
126
87
5
375
50
8
8
32
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3153857--3153883
4
6.8
4
100
0
54
51
25
0
22
1.48
3157045--3157074
2
15.0
2
100
0
60
50
50
0
0
1.00
3157399--3157445
15
2.8
17
78
18
53
40
8
6
44
1.60
3157408--3157448
15
2.5
17
84
11
59
39
4
4
51
1.45
3160252--3160302
24
2.2
22
78
21
52
49
13
3
33
1.61
3166778--3166828
22
2.3
23
96
3
95
43
31
3
21
1.71
3168078--3168157
40
2.0
40
87
4
117
28
10
12
48
1.73
3169387--3169436
20
2.5
21
81
15
61
36
0
0
64
0.94
3169979--3170028
21
2.5
20
80
3
55
38
6
6
50
1.52
3170483--3170527
23
2.0
22
83
12
56
42
11
15
31
1.82
3171174--3171313
71
2.0
69
89
6
214
26
6
7
60
1.48
3171212--3171344
71
1.9
71
80
3
160
30
4
6
57
1.44
3171572--3171623
15
3.2
15
73
19
50
44
0
1
53
1.11
3171655--3171691
16
2.3
16
86
13
58
40
0
0
59
0.97
3171677--3171712
18
1.9
18
88
5
54
58
0
0
41
0.98
3171719--3171759
9
4.8
9
85
11
59
43
0
0
56
0.99
3171705--3171759
16
3.2
16
80
16
58
45
0
1
52
1.11
3171763--3171849
38
2.3
40
76
15
94
54
0
1
44
1.07
3178502--3178570
30
2.3
31
82
7
79
47
2
21
27
1.65
3181936--3181966
14
2.2
14
94
0
53
61
12
6
19
1.53
3183698--3183759
30
2.1
30
100
0
124
32
12
16
38
1.86
3194568--3194672
47
2.2
49
89
8
180
23
6
16
53
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3197350--3197386
9
4.1
9
92
0
65
45
13
10
29
1.77
3197445--3197507
30
2.1
30
85
11
85
20
49
0
30
1.49
3197605--3197664
30
2.0
31
86
3
86
20
40
0
40
1.52
3205554--3205895
88
3.9
88
87
3
392
24
22
23
29
1.99
3205673--3205893
44
5.0
45
65
8
139
24
21
22
31
1.98
3205666--3205893
88
2.6
88
95
2
406
24
21
23
30
1.99
3208120--3208153
16
2.1
17
88
5
52
5
8
5
79
1.05
3210632--3210680
19
2.5
20
80
6
57
40
12
20
26
1.87
3214450--3214498
22
2.3
22
89
3
73
30
0
2
67
1.02
3214462--3214512
15
3.3
15
79
15
59
33
0
1
64
1.05
3214463--3214515
16
3.4
16
82
12
65
33
0
1
64
1.05
3220673--3220699
5
5.4
5
100
0
54
77
0
0
22
0.76
3220708--3220744
18
2.1
19
90
10
60
51
2
0
45
1.15
3221890--3222057
83
2.0
83
94
0
291
35
4
38
21
1.75
3235222--3235283
26
2.4
26
84
7
83
54
0
6
38
1.26
3236784--3236824
6
7.0
6
88
5
66
53
14
31
0
1.41
3251416--3251455
17
2.4
17
87
8
55
67
2
0
30
1.04
3251427--3251461
17
2.1
16
89
5
52
71
2
0
25
1.00
3253247--3253286
21
1.9
21
89
0
62
50
12
10
27
1.72
3256594--3256653
29
2.1
28
81
6
68
50
16
10
23
1.75
3263898--3263970
25
2.8
26
77
4
85
67
4
2
26
1.22
3263988--3264101
26
4.8
24
79
13
103
57
1
5
35
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3263929--3264101
48
3.8
47
75
11
164
58
2
4
34
1.31
3269294--3269433
40
3.6
39
75
8
115
31
22
19
26
1.98
3269851--3269879
15
1.9
15
100
0
58
0
13
0
86
0.58
3300354--3300446
42
2.2
43
86
1
125
29
23
20
26
1.99
3300882--3300950
21
3.3
21
87
0
102
1
40
20
37
1.61
3306426--3306471
7
6.0
7
90
9
56
30
0
17
52
1.45
3306433--3307395
9
107.7
9
72
15
616
32
2
15
48
1.58
3306954--3307006
8
6.0
8
79
16
52
30
0
11
58
1.33
3306946--3307058
20
5.7
20
72
19
76
33
0
12
53
1.38
3306962--3307084
20
5.6
23
75
16
68
34
1
13
50
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230