genome.fa.s19.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  168  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49912606--49912701	20	4.9	20	71	16	85	42	6	7	43	1.57
49912574--49912738	57	2.9	57	91	0	269	40	4	9	45	1.58
49912683--49912820	37	3.7	37	96	0	240	35	5	9	49	1.59
49912755--49912890	56	2.4	57	87	2	202	38	4	7	49	1.51
49915362--49915402	18	2.2	18	86	4	55	21	2	46	29	1.64
49916442--49916526	20	4.2	20	72	11	64	47	41	1	10	1.46
49916456--49916539	20	4.1	20	70	11	62	52	38	0	9	1.34
49917528--49917633	41	2.6	41	84	0	149	30	24	25	19	1.98
49917602--49917814	113	1.9	113	87	1	309	26	23	23	27	2.00
49917795--49917922	40	3.2	39	80	9	118	16	21	23	39	1.92
49921624--49921668	21	2.1	21	87	0	63	57	0	4	37	1.19
49924397--49924428	14	2.3	14	94	0	55	37	15	0	46	1.46
49937207--49937249	21	2.0	21	86	0	59	51	18	6	23	1.70
49949645--49949721	38	2.0	38	97	0	145	20	14	20	44	1.86
49951983--49952062	25	3.2	25	84	7	92	30	20	20	30	1.97
49955992--49956026	16	2.2	16	89	0	52	17	11	22	48	1.79
49956484--49956528	19	2.3	20	85	7	58	33	20	6	40	1.78
49959603--49959641	11	3.5	11	86	6	60	76	0	23	0	0.78
49961929--49962028	51	2.0	51	93	0	173	33	16	22	29	1.95
49963410--49963587	27	6.6	27	84	3	205	29	28	15	26	1.96
49963431--49963586	82	1.9	81	88	3	233	29	28	15	26	1.96
49971440--49971614	27	6.4	27	84	3	181	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49971461--49971614	82	1.9	81	87	4	229	29	27	14	27	1.96
49971440--49971614	54	3.2	54	81	6	201	30	28	14	26	1.95
49973324--49973426	51	2.0	51	88	0	152	33	12	25	29	1.92
49973550--49973688	51	2.7	51	79	0	143	27	19	25	28	1.99
49973424--49973802	138	2.9	128	79	7	365	29	15	26	28	1.96
49973308--49973807	261	1.9	261	87	0	741	30	15	25	29	1.95
49973699--49973797	51	1.9	51	85	0	135	29	14	27	29	1.95
49973776--49973818	21	2.0	21	90	0	68	39	4	30	25	1.76
49973781--49973834	21	2.6	21	84	0	63	44	5	27	22	1.75
49973962--49974062	51	2.0	51	90	3	159	31	15	24	27	1.96
49975827--49975960	23	5.6	25	72	11	93	36	5	2	55	1.37
49976219--49976266	24	2.0	24	95	0	87	35	4	2	58	1.29
49988231--49988291	26	2.4	26	83	8	72	77	1	4	16	1.03
50006612--50006701	44	2.0	44	95	0	162	37	8	16	36	1.80
50013638--50013693	29	1.9	29	88	0	85	26	7	19	46	1.76
50026504--50026528	13	1.9	13	100	0	50	56	4	0	40	1.18
50030834--50030858	12	2.1	12	100	0	50	36	16	8	40	1.77
50031737--50031788	21	2.5	21	83	0	68	46	15	5	32	1.70
50036998--50037192	40	4.9	40	88	1	284	17	29	17	34	1.94
50036998--50037181	20	9.2	20	66	11	108	17	30	18	33	1.95
50045423--50045508	21	4.1	21	74	5	75	43	17	6	32	1.76
50050149--50050202	27	2.0	27	92	0	90	33	3	9	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50054130--50054198	22	3.1	22	81	4	68	43	15	21	18	1.88
50056158--50056213	27	2.1	27	100	0	112	17	21	14	46	1.84
50061095--50061190	27	3.6	27	84	4	77	32	23	28	15	1.95
50061113--50061192	27	3.0	27	92	0	124	32	22	28	16	1.95
50061866--50061928	19	3.3	19	68	0	63	41	9	3	46	1.52
50061963--50061997	17	2.0	17	88	5	52	48	0	17	34	1.47
50062352--50062408	27	2.1	27	93	6	98	17	26	24	31	1.97
50062352--50062417	27	2.4	27	87	9	82	18	28	24	28	1.98
50062473--50062530	28	2.1	28	87	6	82	51	0	5	43	1.24
50063140--50063167	7	4.0	7	100	0	56	42	14	0	42	1.45
50063234--50063320	40	2.2	40	83	6	104	54	1	5	39	1.32
50063248--50063334	40	2.1	43	85	8	117	50	1	4	43	1.30
50063301--50063355	18	3.1	18	75	12	60	50	0	1	47	1.11
50063425--50063482	6	9.7	6	100	0	116	51	0	0	48	1.00
50069123--50069164	15	2.7	16	85	3	59	26	2	0	71	0.98
50074769--50074833	3	21.0	3	72	12	51	58	3	0	38	1.14
50075095--50075139	19	2.4	19	85	7	56	66	6	8	17	1.40
50077115--50077181	31	2.2	30	89	5	100	34	10	10	44	1.73
50077114--50077209	31	3.2	30	81	11	90	34	10	10	44	1.73
50078050--50078084	18	1.9	18	88	0	52	77	5	0	17	0.96
50078401--50078455	20	2.8	20	83	10	60	52	9	1	36	1.44
50079743--50079779	9	4.1	9	85	0	56	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50079990--50080047	29	1.9	30	86	6	82	20	41	0	37	1.53
50085215--50085261	11	4.3	11	78	10	60	42	10	6	40	1.65
50085354--50085571	45	4.8	45	84	1	242	19	21	16	42	1.89
50086728--50086771	17	2.5	17	88	3	61	13	4	2	79	0.98
50107761--50107818	28	2.1	28	87	3	82	12	17	29	41	1.85
50111605--50111796	96	2.0	96	93	0	330	34	15	30	19	1.93
50121334--50121407	29	2.5	29	76	14	71	44	14	14	25	1.84
50121617--50121671	24	2.3	24	84	6	67	47	7	3	41	1.49
50123532--50123572	3	13.7	3	94	0	73	0	34	0	65	0.93
50126363--50126455	46	2.0	45	87	6	134	23	5	27	43	1.76
50129362--50129412	12	4.1	12	72	18	50	49	1	1	47	1.24
50129365--50129406	21	2.0	21	85	0	57	52	2	2	42	1.27
50129889--50129928	19	2.1	19	85	0	53	35	2	7	55	1.42
50138219--50139160	187	5.0	188	94	0	1566	28	24	15	31	1.96
50138219--50139160	375	2.5	376	93	0	1566	28	24	15	31	1.96
50148294--50148332	19	2.0	20	90	5	62	48	23	5	23	1.70
50152996--50153020	4	6.2	4	100	0	50	76	0	0	24	0.80
50158907--50158940	9	3.8	9	92	0	50	47	14	11	26	1.79
50158904--50158940	18	2.1	18	94	0	65	48	13	10	27	1.75
50165019--50165066	24	2.0	23	88	4	69	35	0	2	62	1.07
50170904--50170941	15	2.5	15	91	8	60	39	7	2	50	1.46
50181655--50181679	6	4.2	6	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50181662--50181715	25	2.2	25	83	9	67	50	0	1	48	1.11
50185170--50185203	13	2.6	13	100	0	68	26	8	8	55	1.59
50190222--50190336	43	2.7	43	88	1	167	26	14	25	33	1.94
50197286--50197370	32	2.7	32	96	0	152	37	14	11	36	1.82
50199389--50199442	25	2.2	24	83	6	72	44	1	0	53	1.11
50199435--50199472	18	2.1	19	85	5	51	44	2	0	52	1.14
50201447--50201494	23	2.1	22	88	3	69	47	6	6	39	1.54
50207079--50207103	9	2.8	9	100	0	50	12	8	8	72	1.29
50207257--50207332	29	2.7	27	78	11	71	56	7	0	35	1.28
50207304--50207342	17	2.4	17	91	4	62	58	2	0	38	1.12
50211144--50211198	26	2.1	26	83	6	67	52	5	3	38	1.42
50211539--50211583	19	2.4	18	78	7	54	77	4	4	13	1.07
50214893--50214919	2	13.5	2	100	0	54	51	0	0	48	1.00
50215742--50215785	19	2.3	19	84	7	54	27	2	4	65	1.23
50215735--50215792	28	2.0	28	83	9	73	25	3	3	67	1.22
50215754--50215792	19	2.1	18	85	4	51	28	2	2	66	1.18
50216228--50216274	19	2.6	18	75	24	53	59	0	6	34	1.23
50223851--50223994	49	2.9	49	92	1	225	23	13	29	32	1.94
50231436--50231473	3	12.7	3	94	0	67	36	0	28	34	1.58
50236664--50236790	21	6.0	21	70	3	76	18	23	16	40	1.90
50236653--50236788	42	3.2	42	80	2	139	17	23	16	41	1.89
50237403--50237432	14	2.1	14	100	0	60	60	6	0	33	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50239236--50239891	50	13.2	50	74	4	571	31	21	21	25	1.98
50239230--50239891	100	6.7	100	86	2	872	31	21	21	25	1.98
50241509--50241549	3	13.7	3	84	0	55	31	0	2	65	1.05
50243351--50243404	18	2.8	20	75	13	60	61	0	0	38	0.96
50243375--50243458	30	2.7	31	80	15	102	57	2	0	40	1.12
50243612--50243754	58	2.5	58	78	8	143	25	6	2	64	1.33
50243647--50243698	9	5.7	9	76	13	52	26	3	1	67	1.18
50243685--50243756	18	3.8	18	81	7	90	26	5	2	65	1.28
50243612--50243791	56	3.2	55	77	15	158	27	6	2	64	1.29
50243790--50243814	10	2.5	10	100	0	50	44	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230