genome.fa.s19.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  151  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44528141--44528174	6	5.5	6	86	6	50	41	0	0	58	0.98
44528137--44528174	18	2.1	19	95	5	69	42	0	0	57	0.98
44528138--44528175	7	5.9	7	87	12	55	42	0	0	57	0.98
44531654--44531728	30	2.5	30	80	2	89	29	18	12	40	1.87
44535080--44535160	43	1.9	43	89	2	128	53	2	22	22	1.58
44539962--44540044	6	14.5	6	70	12	50	74	7	2	15	1.14
44539964--44539998	16	2.3	15	90	5	52	77	5	0	17	0.96
44539962--44540044	24	3.7	22	75	9	78	74	7	2	15	1.14
44540009--44540046	17	2.3	17	86	4	51	76	5	2	15	1.08
44547890--44548033	72	2.0	72	94	0	252	31	15	12	40	1.84
44548080--44548142	26	2.4	26	97	2	117	15	28	3	52	1.58
44554260--44554306	25	2.0	24	84	12	62	40	0	21	38	1.53
44554290--44554338	20	2.5	20	83	6	64	48	2	24	24	1.61
44555060--44555107	18	2.7	20	72	21	52	50	2	0	47	1.12
44555268--44555307	21	2.0	20	85	5	53	37	40	10	12	1.77
44555268--44555318	20	2.5	21	83	3	59	39	33	9	17	1.83
44555361--44555465	35	3.1	35	77	10	110	19	3	34	42	1.69
44563767--44563799	15	2.2	15	94	0	57	51	0	6	42	1.26
44564566--44564631	16	4.4	16	67	27	54	54	0	25	19	1.44
44565808--44565903	49	2.0	48	91	2	156	43	5	26	25	1.75
44571168--44571231	15	3.9	16	77	18	69	43	1	7	46	1.42
44571994--44572079	43	2.0	43	93	0	145	48	2	24	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44574161--44574199	20	2.0	20	94	0	69	43	15	12	28	1.83
44576172--44576226	23	2.3	23	84	3	74	30	12	29	27	1.93
44576216--44576267	24	2.2	24	85	0	68	26	21	25	26	1.99
44579209--44579241	14	2.2	16	89	10	52	30	3	0	66	1.06
44581579--44581622	21	2.1	21	83	8	54	11	0	34	54	1.36
44581841--44582257	126	3.3	126	89	1	622	33	18	20	27	1.96
44585259--44585469	116	1.8	116	84	0	287	45	4	7	42	1.51
44585648--44585688	21	2.0	21	85	0	55	4	21	41	31	1.74
44585945--44585987	18	2.4	18	88	0	59	44	9	27	18	1.80
44586599--44586623	7	3.6	7	100	0	50	56	16	0	28	1.41
44586619--44586644	7	3.7	7	100	0	52	57	15	0	26	1.38
44586599--44586644	14	3.3	14	88	11	60	56	15	0	28	1.39
44587850--44587886	11	3.4	11	84	0	56	43	0	35	21	1.53
44587852--44587908	22	2.5	24	83	13	77	45	0	31	22	1.53
44589099--44589132	12	2.8	12	90	0	50	67	0	0	32	0.91
44593252--44593309	29	2.0	29	86	10	82	10	39	12	37	1.77
44594653--44594948	50	5.9	50	80	5	332	24	17	27	29	1.98
44594657--44594940	101	2.8	101	91	2	457	24	17	27	30	1.98
44602344--44602382	20	1.9	20	89	5	60	64	7	0	28	1.21
44602350--44602406	22	2.7	21	81	10	55	59	3	0	36	1.14
44602612--44602636	13	1.9	13	100	0	50	32	0	0	68	0.90
44603273--44603310	21	1.9	20	84	10	51	31	2	5	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44603283--44603337	29	1.9	30	85	14	80	32	0	7	60	1.24
44608313--44608344	10	3.1	11	82	17	50	68	9	0	21	1.17
44609825--44609865	18	2.3	18	86	0	55	41	12	0	46	1.41
44611020--44611543	152	3.4	151	86	6	718	53	8	8	29	1.60
44611670--44611708	18	2.1	19	85	4	53	17	0	7	74	1.05
44611985--44612094	10	11.2	10	71	7	64	59	4	1	34	1.29
44612354--44612407	20	2.7	20	72	8	56	37	0	1	61	1.07
44612354--44612446	22	4.4	21	69	21	61	31	0	3	65	1.08
44612770--44612962	86	2.2	84	83	8	235	38	21	8	31	1.83
44616756--44616783	10	2.8	10	100	0	56	42	0	10	46	1.38
44618769--44618823	29	2.0	27	89	7	83	38	12	0	49	1.41
44619126--44619175	13	3.9	12	79	10	55	42	2	18	38	1.61
44624593--44624617	3	8.3	3	100	0	50	0	0	32	68	0.90
44627269--44627338	34	2.1	34	94	0	122	21	7	25	45	1.77
44630694--44630741	22	2.2	22	85	7	62	22	50	10	16	1.76
44631793--44631884	13	7.0	13	86	7	123	33	2	6	57	1.36
44631792--44631925	66	2.0	66	80	11	150	33	2	6	56	1.41
44631920--44631953	15	2.3	15	94	0	59	41	14	2	41	1.61
44634528--44634584	26	2.2	26	96	0	105	45	7	28	19	1.76
44634908--44634935	5	5.6	5	100	0	56	82	17	0	0	0.68
44636255--44636297	4	10.8	4	94	0	77	76	0	23	0	0.78
44637876--44637974	52	1.9	52	89	4	155	30	31	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44637927--44637977	22	2.3	22	87	12	70	31	31	0	37	1.58
44638011--44638079	31	2.2	33	92	5	115	34	1	0	63	1.03
44638011--44638071	11	5.7	11	71	7	54	36	1	0	62	1.05
44638953--44638991	20	1.9	19	85	10	51	30	2	12	53	1.52
44640409--44641223	115	7.1	115	85	9	1067	43	26	0	29	1.57
44640892--44640947	6	9.7	6	84	3	71	35	42	0	21	1.53
44640892--44640975	40	2.1	40	84	0	105	38	36	1	23	1.63
44640938--44641275	29	12.7	23	71	22	120	43	24	0	31	1.57
44640409--44641223	29	28.3	29	85	8	1053	43	26	0	29	1.57
44641270--44641393	56	2.2	56	88	2	178	37	13	6	41	1.70
44649504--44649590	25	3.5	24	71	13	70	33	24	25	17	1.96
44649610--44649692	27	3.2	26	77	12	82	34	19	26	19	1.95
44659532--44659601	35	2.0	34	86	8	97	45	1	4	48	1.30
44659559--44659619	24	2.5	23	80	15	61	45	1	4	47	1.34
44659536--44659617	35	2.4	34	80	8	94	46	1	4	47	1.31
44660920--44660975	3	18.7	3	84	0	67	39	0	3	57	1.16
44661126--44661189	27	2.5	27	80	12	73	39	0	26	34	1.57
44680520--44680553	14	2.5	14	95	4	61	14	0	35	50	1.44
44692677--44692758	35	2.4	34	72	8	85	64	0	1	34	1.01
44696242--44696308	9	7.4	9	86	0	89	40	25	10	23	1.86
44696242--44696308	27	2.5	27	90	0	107	40	25	10	23	1.86
44696332--44696389	6	8.7	7	92	7	63	22	1	13	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44696340--44696382	6	7.0	6	97	2	77	18	0	16	65	1.28
44696340--44696394	18	2.9	19	89	10	87	21	0	12	65	1.26
44696431--44696464	13	2.6	13	95	0	59	14	0	47	38	1.45
44697950--44697974	6	4.2	6	100	0	50	16	32	0	52	1.44
44698953--44699064	37	3.0	37	89	0	170	33	4	16	46	1.67
44699287--44699311	12	2.1	12	100	0	50	16	24	36	24	1.94
44700815--44700857	18	2.4	18	88	0	59	18	27	9	44	1.80
44701120--44701159	21	1.9	21	84	0	53	35	42	17	5	1.71
44701281--44701584	49	6.2	49	93	0	509	41	2	7	48	1.44
44704538--44704949	125	3.3	124	93	1	691	29	20	17	32	1.96
44722035--44722062	13	2.2	13	100	0	56	50	7	0	42	1.30
44732625--44732958	42	7.9	42	90	1	524	35	21	19	22	1.96
44732624--44732958	171	2.0	170	91	0	544	35	21	19	22	1.96
44733282--44733333	27	1.9	27	84	0	68	1	46	19	32	1.61
44738845--44739069	9	24.8	9	75	8	179	32	3	16	48	1.61
44741597--44741644	21	2.3	21	85	0	60	37	2	0	60	1.09
44742722--44742937	115	1.9	114	90	0	342	24	23	16	35	1.95
44742858--44743012	75	2.1	75	92	0	256	23	21	15	38	1.92
44742743--44743126	189	2.0	190	91	0	617	24	24	15	35	1.95
44742933--44743489	114	4.9	114	92	0	898	26	25	15	32	1.95
44746781--44746907	42	2.8	45	69	20	102	40	6	5	47	1.52
44751252--44751298	21	2.2	21	92	0	76	34	21	44	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44751707--44751909	42	4.8	42	90	1	318	23	20	22	33	1.97
44752854--44752890	16	2.3	16	90	0	56	72	2	0	24	0.97
44754500--44754563	31	2.1	31	100	0	128	34	9	9	46	1.68
44767890--44767952	24	2.6	24	75	9	74	9	28	7	53	1.61
44770042--44770080	9	4.2	9	86	3	51	43	2	33	20	1.65
44771962--44772086	44	2.8	44	81	4	146	42	6	4	47	1.48
44778829--44778857	4	7.2	4	100	0	58	48	24	0	27	1.51
44782288--44782373	33	2.7	32	77	13	95	45	18	9	26	1.80
44782364--44782403	20	2.0	20	90	0	62	45	15	10	30	1.78
44785613--44785743	69	1.9	66	84	7	174	45	13	10	30	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230