genome.fa.s19.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  158  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46827655--46827697	9	4.9	9	80	5	52	37	20	32	9	1.85
46832170--46832225	27	2.1	27	96	0	103	42	23	17	16	1.88
46838678--46838712	17	1.9	19	88	11	56	45	2	17	34	1.63
46846367--46846400	2	17.0	2	100	0	68	0	50	0	50	1.00
46846406--46846443	2	19.0	2	88	0	58	52	44	0	2	1.14
46847713--46847941	109	2.1	109	96	1	422	22	13	15	47	1.81
46852320--46852359	21	1.9	21	90	10	64	25	0	5	70	1.08
46853593--46853659	10	7.4	9	71	17	50	67	1	1	29	1.09
46858955--46858987	15	2.1	16	88	5	50	63	0	12	24	1.28
46871042--46871093	25	2.1	25	85	7	70	19	23	19	38	1.93
46872431--46872485	25	2.2	25	93	0	92	21	27	14	36	1.93
46875045--46875081	17	2.2	17	100	0	74	51	0	10	37	1.37
46877677--46877728	24	2.2	24	89	0	77	55	9	1	32	1.43
46878733--46878905	85	2.0	85	100	0	346	36	21	11	30	1.89
46879762--46880076	111	2.8	111	91	1	499	35	18	14	30	1.92
46880105--46880143	21	1.9	20	84	5	51	58	2	10	28	1.44
46880184--46880248	22	3.0	22	78	13	71	69	7	4	18	1.31
46880554--46880635	21	4.0	21	69	19	64	65	2	7	24	1.30
46882094--46883074	44	22.3	44	63	12	156	24	24	23	27	2.00
46882232--46882320	45	2.0	45	84	0	115	26	23	20	29	1.99
46882100--46882287	88	2.1	88	82	4	245	25	25	22	27	2.00
46882286--46883112	88	9.4	88	95	0	1406	24	24	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46882154--46882926	133	5.8	133	68	15	418	25	24	23	26	2.00
46884183--46884229	21	2.2	21	85	7	60	23	38	12	25	1.90
46884321--46884353	8	3.9	9	84	15	52	12	9	0	78	0.95
46884322--46884363	16	2.6	16	85	11	50	11	9	0	78	0.96
46885165--46885200	10	3.6	10	88	0	54	0	16	0	83	0.65
46885927--46885963	17	2.1	18	90	5	58	45	0	24	29	1.53
46895496--46895561	28	2.4	28	92	0	105	39	22	1	36	1.64
46895954--46895986	13	2.5	13	100	0	66	48	15	6	30	1.69
46898637--46898710	20	4.0	20	70	25	72	48	10	9	31	1.70
46898625--46898719	34	2.8	34	91	4	147	45	12	7	34	1.70
46899542--46899621	24	3.4	23	70	5	70	27	18	25	28	1.98
46900101--46900603	254	2.0	254	91	0	808	41	14	19	24	1.89
46900913--46900957	23	2.0	23	90	0	72	42	20	6	31	1.77
46900914--46900963	23	2.2	23	85	0	64	44	20	8	28	1.79
46906432--46906470	18	2.2	18	90	9	62	38	2	0	58	1.12
46917793--46918000	40	5.2	40	84	5	109	25	26	23	23	2.00
46917816--46918000	40	4.6	41	87	4	243	24	25	24	24	2.00
46919623--46919761	49	2.8	49	95	0	242	33	28	14	24	1.94
46922674--46922887	47	4.5	47	91	2	329	28	30	8	31	1.88
46922674--46922887	96	2.3	94	90	1	329	28	30	8	31	1.88
46925283--46925427	23	6.3	23	85	4	195	31	26	18	22	1.97
46935774--46935855	42	2.0	42	97	0	155	45	13	10	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46936954--46937004	24	2.1	24	100	0	102	33	27	23	15	1.95
46939027--46939068	19	2.3	18	95	4	75	42	14	2	40	1.58
46941978--46942030	20	2.7	20	91	2	90	58	9	7	24	1.55
46941978--46942029	10	5.4	10	93	4	81	57	9	7	25	1.57
46959579--46959737	51	3.3	51	69	13	145	33	16	18	31	1.93
46959540--46959789	95	2.6	96	86	4	346	33	15	20	31	1.93
46961520--46961556	6	6.2	6	100	0	74	16	0	0	83	0.64
46968575--46968662	26	3.3	26	71	7	70	19	30	19	30	1.96
46973156--46973197	20	2.0	21	90	4	68	33	0	7	59	1.25
46973205--46973339	58	2.3	57	84	5	173	42	1	2	52	1.25
46973437--46973462	13	2.0	13	100	0	52	53	30	0	15	1.42
46973526--46973588	31	2.0	31	87	0	90	28	20	4	46	1.71
46973528--46973588	16	3.9	16	84	4	79	29	21	4	44	1.73
46974596--46974658	31	2.1	31	87	3	92	42	3	6	47	1.44
46982642--46982728	43	2.0	43	95	0	156	25	20	16	37	1.93
46987406--46987560	48	3.3	49	66	26	127	36	9	12	40	1.77
46987379--46987598	93	2.4	93	93	1	379	35	10	12	41	1.77
47002471--47002515	23	2.0	23	90	0	72	42	15	6	35	1.73
47002472--47002521	23	2.2	23	85	0	64	44	16	8	32	1.76
47013230--47013551	111	2.9	110	92	1	538	31	16	17	34	1.93
47014622--47014831	107	2.0	107	86	1	296	38	20	16	25	1.92
47016047--47016199	42	3.6	43	77	6	134	39	24	13	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47016539--47016629	43	2.1	43	87	2	130	45	9	10	34	1.73
47018979--47019081	29	3.5	29	67	19	77	66	7	14	11	1.45
47019377--47019420	22	1.9	23	86	9	63	34	6	4	54	1.47
47020358--47020407	22	2.3	21	82	3	64	46	30	0	24	1.53
47020658--47020821	40	4.1	40	83	0	186	22	19	21	35	1.96
47023557--47023652	28	3.5	27	79	8	95	57	1	8	33	1.36
47024736--47024762	14	1.9	14	100	0	54	81	0	0	18	0.69
47025602--47025797	44	4.4	44	78	8	193	27	21	21	29	1.99
47025631--47025797	89	1.9	89	89	2	264	26	23	21	28	1.99
47038182--47038259	29	2.7	28	82	5	93	56	1	8	33	1.39
47038589--47038655	3	22.3	3	78	6	55	58	2	5	32	1.38
47044246--47044283	20	2.1	18	85	14	51	26	0	18	55	1.43
47045693--47045747	20	2.8	20	89	10	94	49	0	29	21	1.50
47048717--47048788	20	3.6	20	94	0	126	22	27	0	50	1.50
47048726--47048758	15	2.1	16	88	5	50	21	27	0	51	1.48
47053054--47053113	24	2.6	25	84	10	74	55	0	0	45	0.99
47053085--47053131	18	2.5	18	80	13	51	63	0	0	36	0.94
47053081--47053132	19	2.7	20	79	11	63	63	0	0	36	0.95
47063443--47063473	16	1.9	16	93	0	53	9	9	6	74	1.23
47063943--47063999	28	2.0	28	90	6	89	21	52	0	26	1.47
47065619--47065716	39	2.5	39	88	3	144	48	30	2	18	1.59
47065778--47065816	11	3.6	11	82	6	53	10	20	0	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47065776--47065816	21	2.0	21	95	0	73	9	19	0	70	1.14
47082294--47082322	2	15.0	2	92	7	51	0	48	0	51	1.00
47085796--47085868	30	2.4	31	84	9	105	49	1	19	30	1.57
47093321--47093355	16	2.3	15	90	5	52	40	0	0	60	0.97
47093321--47093362	16	2.9	14	86	13	50	42	0	0	57	0.99
47094971--47095188	109	2.0	109	92	0	364	28	35	20	15	1.93
47095911--47095950	14	2.8	14	88	3	53	22	2	5	70	1.19
47095906--47095947	15	2.6	16	77	11	50	14	2	7	76	1.10
47096115--47096148	11	3.2	10	88	12	50	41	2	0	55	1.15
47096188--47096227	21	1.9	21	84	0	53	17	7	0	75	1.03
47102383--47103284	44	20.4	44	80	3	833	31	13	22	31	1.93
47102385--47103284	353	2.5	354	85	3	1159	31	13	22	31	1.93
47103787--47103827	22	2.0	20	86	13	57	46	34	4	14	1.66
47105415--47105471	29	2.0	29	83	13	73	50	5	7	36	1.52
47107235--47107261	5	5.4	5	100	0	54	40	18	18	22	1.91
47108292--47108328	9	4.1	9	92	0	65	29	10	13	45	1.77
47111072--47111149	25	3.1	25	81	0	102	35	24	12	26	1.92
47111070--47111217	62	2.7	50	75	21	161	36	24	14	25	1.93
47111136--47111161	12	2.2	12	100	0	52	34	26	15	23	1.94
47111148--47111217	25	2.8	25	86	0	104	37	24	15	22	1.93
47111087--47111211	62	2.0	62	100	0	250	36	24	14	25	1.93
47114262--47114317	20	2.7	21	81	10	62	33	5	7	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47114282--47114344	26	2.6	22	75	20	63	30	6	7	55	1.54
47114289--47114376	26	3.3	26	82	3	104	29	5	5	59	1.44
47120221--47120290	10	7.0	10	70	6	52	64	1	1	32	1.11
47120255--47120305	26	2.0	26	84	7	68	68	1	0	29	1.00
47120637--47120710	29	2.5	29	82	4	85	25	13	13	47	1.79
47121545--47121593	6	8.3	6	82	10	57	48	0	0	51	1.00
47121539--47121593	18	3.1	18	77	12	60	49	0	0	50	1.00
47121575--47121643	20	3.3	20	80	11	86	43	0	0	56	0.99
47121575--47121668	22	4.5	21	76	18	74	40	0	1	58	1.05
47121575--47121657	41	2.0	40	88	6	123	39	0	1	59	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230