genome.fa.s19.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  145  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42802572--42802627	27	2.0	28	93	3	96	12	10	17	58	1.61
42802575--42802634	27	2.1	28	87	6	86	13	11	16	58	1.63
42803520--42803757	44	5.2	44	70	13	165	26	21	19	33	1.97
42803483--42803752	142	1.9	142	92	0	459	26	20	18	34	1.96
42812381--42812426	19	2.4	19	85	7	58	41	10	23	23	1.86
42816285--42816329	23	2.0	23	81	0	54	62	4	4	28	1.34
42816990--42817061	36	2.0	36	94	0	126	50	8	8	33	1.63
42824982--42825121	75	1.9	76	87	1	210	36	26	20	16	1.94
42825100--42825141	16	2.6	16	96	0	75	33	28	26	11	1.92
42824982--42825128	38	3.9	38	89	1	206	36	26	21	16	1.94
42827865--42827932	25	2.7	25	83	0	82	30	26	17	25	1.97
42827850--42827944	25	3.8	25	69	15	70	30	24	20	25	1.98
42830226--42830269	22	2.0	22	100	0	88	40	13	9	36	1.76
42834863--42834943	23	3.5	23	64	21	60	43	1	20	34	1.60
42834847--42834941	47	2.0	47	100	0	190	45	2	16	35	1.60
42834944--42834991	24	2.0	24	100	0	96	33	16	0	50	1.46
42837213--42837271	20	2.9	21	77	10	68	38	1	5	54	1.33
42837915--42837963	25	1.9	26	88	12	75	53	10	4	32	1.54
42842574--42842614	21	1.9	22	85	5	57	43	2	2	51	1.28
42845174--42845309	37	3.7	35	76	14	121	38	30	13	16	1.88
42845166--42845317	74	2.1	74	84	2	198	41	29	12	16	1.85
42846868--42847186	145	2.2	144	86	0	431	31	23	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42848221--42848259	14	2.7	15	92	4	62	46	5	0	48	1.24
42848656--42848685	13	2.2	14	94	5	53	26	0	16	56	1.40
42859580--42859697	56	2.1	56	84	3	148	27	25	25	22	2.00
42860534--42860609	25	3.1	25	77	5	66	34	23	25	17	1.96
42860566--42860670	25	4.2	25	76	2	95	38	17	24	20	1.93
42860812--42860864	20	2.5	22	77	20	60	47	11	5	35	1.63
42863696--42863744	21	2.3	21	96	0	89	16	10	22	51	1.74
42869078--42869176	28	3.5	29	78	12	98	29	29	15	26	1.96
42873188--42873256	23	3.1	22	85	4	68	42	23	17	17	1.89
42873203--42873258	23	2.4	23	90	0	94	41	21	19	17	1.91
42879020--42879097	26	3.2	26	70	15	76	41	26	11	20	1.87
42879020--42879119	47	2.1	46	85	10	132	40	26	12	22	1.88
42879090--42879129	21	1.9	21	84	0	53	40	25	12	22	1.89
42905758--42905874	62	1.9	59	81	5	135	41	4	5	48	1.45
42908581--42908619	20	2.0	20	89	0	60	17	20	0	61	1.34
42908840--42909071	50	4.6	50	76	5	184	24	27	20	28	1.99
42912126--42912364	38	6.3	38	72	10	168	39	18	12	29	1.87
42916102--42916160	29	2.0	29	90	0	91	33	18	18	28	1.95
42916128--42916383	38	6.7	38	78	4	230	39	19	13	26	1.90
42916143--42916350	114	1.8	114	88	0	317	38	21	13	25	1.91
42916998--42917098	44	2.3	44	91	0	157	21	1	22	53	1.56
42927510--42927561	3	16.7	3	76	7	50	63	1	5	28	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42928324--42928363	16	2.4	17	79	4	55	77	0	10	12	0.99
42932413--42932443	15	2.1	15	93	0	53	12	3	3	80	0.95
42934341--42934383	19	2.3	19	84	8	52	25	27	11	34	1.91
42942625--42942655	15	2.1	15	100	0	62	51	19	12	16	1.76
42946347--42946387	21	2.0	20	85	4	55	48	7	7	36	1.59
42947750--42947775	11	2.4	11	100	0	52	38	23	7	30	1.83
42952581--42952605	6	4.2	6	100	0	50	68	0	0	32	0.90
42956310--42956424	27	4.2	28	85	5	164	32	21	22	23	1.98
42956780--42956934	27	5.7	27	86	0	193	18	17	21	42	1.89
42957312--42957375	28	2.3	28	91	2	112	35	21	18	23	1.95
42957729--42957885	27	5.8	27	89	0	224	17	17	22	42	1.89
42956358--42958260	951	2.0	951	98	0	3707	32	23	14	29	1.95
42959153--42959276	40	3.1	40	88	0	167	36	21	26	15	1.93
42959153--42959249	20	4.8	20	69	9	81	36	22	26	14	1.93
42960679--42960714	18	1.9	19	94	5	65	33	16	5	44	1.71
42961116--42961221	40	2.7	40	96	0	194	29	14	26	30	1.95
42969251--42969435	79	2.3	81	84	7	236	25	27	22	24	2.00
42969251--42969435	40	4.7	40	83	7	234	25	27	22	24	2.00
42980443--42980977	9	58.1	9	69	15	217	45	18	1	34	1.59
42980400--42980520	27	4.4	27	77	9	104	47	16	0	35	1.53
42980588--42980927	47	6.8	47	78	13	299	46	19	1	33	1.58
42980566--42980988	156	2.7	160	88	6	603	45	18	1	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42980579--42980977	9	44.0	9	71	15	218	46	19	1	33	1.57
42983620--42983732	21	5.4	21	83	0	145	39	15	41	2	1.62
42984006--42984315	42	7.3	42	81	5	286	25	17	23	32	1.96
42984006--42984311	84	3.6	84	83	4	339	26	17	23	32	1.97
42984762--42984853	9	10.2	9	82	4	105	29	9	19	41	1.83
42992184--42992271	28	3.1	28	73	9	70	40	10	3	45	1.55
42992504--42992568	3	21.7	3	96	0	121	33	0	1	64	1.03
42992673--42992722	20	2.4	21	83	12	68	28	16	2	54	1.53
42993740--42993793	26	2.0	27	92	3	92	38	7	14	38	1.75
42996186--42996233	3	16.0	3	78	8	53	33	0	6	60	1.22
42996184--42996232	12	4.1	12	84	10	64	34	0	8	57	1.29
42996589--42996680	39	2.4	39	82	10	102	19	22	30	27	1.98
42998828--42998900	29	2.7	26	74	19	69	57	1	2	38	1.22
42998880--42998922	21	2.0	21	90	0	68	62	0	2	34	1.08
42998958--42999062	19	5.3	21	71	14	64	60	1	2	35	1.23
42998997--42999032	17	2.1	18	89	5	56	66	2	0	30	1.06
42999568--42999611	21	2.1	21	83	8	54	25	2	4	68	1.20
42999983--43000033	19	2.7	18	82	8	57	29	3	1	64	1.22
42999977--43000038	10	6.4	9	73	12	52	30	3	1	64	1.19
43001533--43001596	25	2.5	25	82	10	67	23	6	7	62	1.45
43008821--43008849	14	2.0	15	93	6	51	20	0	3	75	0.94
43012987--43013055	29	2.3	29	85	5	84	47	15	14	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43013127--43013188	29	2.2	28	88	2	88	25	14	14	45	1.83
43013406--43013757	125	2.8	125	92	0	607	31	16	20	31	1.95
43016860--43016884	10	2.5	10	100	0	50	48	0	8	44	1.32
43016923--43016949	10	2.7	10	100	0	54	51	0	7	40	1.30
43016971--43017005	18	1.9	18	94	0	61	51	2	8	37	1.47
43016933--43017059	56	2.3	55	85	9	161	48	4	9	37	1.57
43016860--43017005	66	2.2	64	88	8	206	47	4	8	39	1.56
43017057--43017119	29	2.2	29	100	0	126	23	0	31	44	1.54
43017096--43017442	18	19.7	18	63	23	116	27	0	25	46	1.57
43017067--43017241	93	1.9	94	95	1	316	27	0	26	45	1.58
43017067--43017432	47	7.4	47	73	16	312	27	0	25	46	1.57
43017160--43017417	29	8.8	29	72	21	200	27	0	26	46	1.53
43017196--43017417	123	1.8	123	95	0	408	27	0	25	46	1.53
43017330--43017402	35	2.1	35	100	0	146	24	0	31	43	1.54
43017252--43017442	100	2.0	92	86	8	265	27	0	24	47	1.56
43017358--43017420	24	2.4	27	84	12	78	23	0	31	44	1.54
43017438--43017501	25	2.5	26	87	2	103	37	12	0	50	1.41
43018596--43018627	7	4.6	7	100	0	64	59	12	0	28	1.34
43019708--43019758	10	5.0	10	78	4	57	64	0	0	35	0.94
43019708--43019771	31	2.1	30	91	2	101	60	0	0	39	0.97
43019716--43019755	21	1.9	21	89	0	62	60	0	0	40	0.97
43019773--43019885	51	2.2	51	95	0	190	42	0	29	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43019857--43019907	22	2.3	22	100	0	102	39	0	33	27	1.57
43020122--43020203	29	2.9	28	80	5	74	40	12	14	32	1.83
43032467--43032531	33	2.0	33	93	0	112	23	21	15	40	1.91
43032509--43032777	46	5.6	46	84	10	340	28	22	14	34	1.93
43032552--43032771	52	4.3	52	85	8	299	27	22	14	35	1.93
43032509--43032777	98	2.7	98	93	0	457	28	22	14	34	1.93
43035903--43036106	49	4.0	50	81	10	232	32	29	12	24	1.92
43035987--43036105	58	2.0	59	96	1	222	31	31	12	24	1.92
43035996--43036086	28	3.2	27	66	22	69	27	31	14	26	1.95
43037364--43037515	37	3.9	37	81	13	173	26	21	15	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230