genome.fa.s19.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  109  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31533500--31533564	27	2.4	27	97	0	121	13	33	21	30	1.92
31535890--31535952	31	2.1	30	93	3	108	34	17	9	38	1.82
31538413--31538519	50	2.1	50	86	3	153	20	32	22	24	1.98
31545715--31545752	20	1.9	20	88	0	58	34	5	5	55	1.45
31554588--31554624	19	2.0	18	89	5	56	51	2	0	45	1.15
31554678--31554711	5	6.8	5	100	0	68	61	0	38	0	0.96
31555714--31555756	20	2.2	20	91	0	68	39	4	11	44	1.62
31556018--31556089	27	2.7	26	82	6	90	40	6	16	36	1.76
31558679--31558703	6	4.2	6	100	0	50	16	16	0	68	1.22
31560240--31560307	9	7.2	9	75	15	57	57	0	1	41	1.08
31560250--31560289	11	3.5	11	90	6	62	57	0	2	40	1.12
31562938--31562977	20	1.9	19	85	14	53	25	35	0	40	1.56
31571002--31571036	17	2.0	18	88	5	54	42	11	11	34	1.77
31573815--31573956	71	2.0	71	100	0	284	32	15	7	45	1.73
31580445--31580478	15	2.3	15	89	0	50	55	11	17	14	1.68
31580572--31580627	18	3.1	19	76	20	57	69	5	5	19	1.28
31582580--31583365	134	5.9	134	96	0	1398	29	23	19	26	1.98
31583346--31584758	132	10.7	132	89	2	1780	30	25	15	29	1.95
31583346--31584758	263	5.4	263	87	3	1753	30	25	15	29	1.95
31583346--31584495	395	2.9	393	91	1	1838	30	25	14	29	1.95
31585708--31585757	7	7.4	7	80	14	61	4	14	0	82	0.82
31585707--31585757	6	7.8	6	81	16	50	3	15	0	80	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31585708--31585757	12	3.8	13	82	15	66	4	14	0	82	0.82
31587551--31587612	17	3.2	20	71	21	60	43	8	22	25	1.80
31588061--31589165	552	2.0	552	99	0	2165	37	19	20	23	1.94
31590071--31590104	15	2.3	15	89	0	50	55	11	17	14	1.68
31590199--31590254	18	3.1	19	76	20	57	69	5	5	19	1.28
31605382--31605645	40	6.7	40	89	5	360	25	21	27	25	1.99
31613406--31613669	40	6.7	40	89	5	360	25	21	27	25	1.99
31619998--31620063	28	2.4	27	75	7	69	33	21	22	22	1.97
31620272--31620540	64	4.2	64	80	5	244	37	21	19	21	1.95
31620301--31620540	32	7.5	32	77	5	157	37	23	19	20	1.95
31620584--31620648	27	2.4	25	80	14	69	35	21	23	20	1.96
31620712--31620760	23	2.1	24	88	3	73	46	24	8	20	1.77
31620810--31621329	27	19.3	27	85	2	535	23	21	20	35	1.96
31621223--31621328	26	4.0	26	85	2	131	18	19	23	37	1.94
31626047--31626156	55	2.0	55	98	0	211	44	10	19	25	1.83
31636017--31636115	20	4.9	20	77	3	110	12	29	20	38	1.88
31636015--31636115	40	2.5	40	90	0	157	11	28	20	38	1.88
31639339--31639386	25	2.0	24	84	8	62	33	12	12	41	1.80
31652834--31652902	10	7.4	9	73	16	61	23	1	1	73	0.99
31652859--31652900	22	2.0	21	90	4	66	23	0	2	73	0.94
31652916--31652975	27	2.2	28	84	3	77	21	3	5	70	1.22
31653032--31653093	3	20.7	3	77	12	56	29	8	1	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31653103--31653170	21	3.3	21	75	15	70	13	1	10	75	1.12
31664902--31665068	50	3.2	50	82	4	172	22	27	22	26	1.99
31674357--31674618	39	6.7	40	85	9	312	25	22	27	24	2.00
31691595--31691781	100	1.9	99	83	6	243	25	16	27	31	1.96
31696216--31696258	20	2.2	19	87	4	59	11	16	20	51	1.75
31696264--31696288	13	1.9	13	100	0	50	40	8	8	44	1.63
31700610--31700681	25	2.8	26	83	6	103	27	23	19	29	1.98
31710876--31711144	30	9.1	30	75	9	153	40	11	24	23	1.87
31710876--31711144	116	2.3	116	82	5	328	40	11	24	23	1.87
31713704--31713761	20	2.9	20	77	10	64	12	29	20	37	1.89
31715469--31715532	30	2.1	30	91	0	101	20	28	32	18	1.96
31727460--31727488	15	1.9	15	100	0	58	51	27	0	20	1.47
31727623--31727751	65	2.0	65	100	0	258	39	15	12	32	1.85
31730422--31730486	27	2.4	27	89	0	94	38	21	15	24	1.92
31730709--31730789	26	3.1	26	87	0	108	30	19	12	37	1.89
31730897--31730985	28	3.2	28	90	1	135	25	22	22	29	1.99
31731842--31731876	18	1.9	18	88	0	52	48	8	25	17	1.75
31736088--31736112	7	3.6	7	100	0	50	60	0	12	28	1.32
31741840--31742014	27	6.4	27	84	3	192	31	26	14	27	1.95
31741858--31742013	82	1.9	81	86	3	224	30	27	14	26	1.95
31758818--31758995	27	6.6	27	85	3	207	30	27	15	26	1.96
31758839--31758994	82	1.9	81	88	3	233	30	27	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31764413--31764437	11	2.3	11	100	0	50	56	20	8	16	1.65
31767331--31767406	24	3.2	24	81	7	91	27	9	22	40	1.84
31767339--31767428	24	3.8	24	87	0	108	26	7	22	43	1.80
31767644--31767782	63	2.2	64	85	1	190	23	18	18	39	1.92
31767610--31767788	95	1.9	95	84	2	243	22	18	18	40	1.92
31767603--31767801	32	6.3	33	75	7	153	22	17	20	40	1.92
31767793--31767839	22	2.1	22	88	0	67	25	17	10	46	1.79
31770743--31770790	22	2.2	23	82	14	57	56	6	0	37	1.25
31773484--31773516	14	2.3	15	89	5	50	24	3	3	69	1.16
31773483--31773526	12	3.5	12	79	11	52	25	9	2	63	1.35
31773560--31773626	6	11.5	6	87	10	86	13	13	0	73	1.11
31773593--31773656	23	2.6	25	76	18	62	14	9	3	73	1.20
31780108--31781130	341	3.0	341	97	0	1931	38	13	15	32	1.86
31781843--31781889	23	2.0	23	88	8	69	14	14	14	55	1.70
31783121--31783149	7	4.1	7	100	0	58	41	0	0	58	0.98
31784046--31784088	12	3.5	12	81	6	50	27	9	2	60	1.40
31784046--31784078	13	2.6	13	85	4	50	24	6	3	66	1.28
31784123--31784183	6	9.7	6	79	10	68	13	3	6	77	1.09
31795311--31795431	43	2.8	43	80	8	131	29	24	18	27	1.98
31800386--31800569	51	3.6	51	81	5	221	29	28	17	24	1.97
31800381--31800565	101	1.8	101	89	3	291	30	27	17	24	1.97
31800376--31800599	101	2.2	100	78	10	249	29	28	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31803095--31803349	29	8.8	29	79	10	270	36	13	25	24	1.92
31803095--31803459	29	12.6	29	76	6	193	36	12	26	24	1.91
31803384--31803467	30	2.9	29	85	3	114	36	10	26	26	1.89
31806959--31807002	22	1.9	23	86	9	63	65	13	2	18	1.36
31808714--31808763	27	1.9	25	84	8	64	8	32	2	58	1.39
31809772--31809805	12	2.9	12	91	4	52	14	5	8	70	1.31
31820612--31820662	20	2.5	20	90	6	77	27	13	17	41	1.87
31832228--31832266	19	2.1	19	95	0	69	17	35	35	10	1.84
31834511--31834864	40	8.9	40	90	0	519	23	28	22	24	1.99
31834511--31834864	80	4.4	80	95	0	582	23	28	22	24	1.99
31844171--31844209	21	1.9	19	85	10	51	23	5	15	56	1.59
31849399--31849522	61	2.0	62	90	4	198	28	13	12	45	1.79
31851334--31851359	7	3.7	7	100	0	52	26	30	0	42	1.56
31851331--31851366	14	2.6	14	86	0	54	25	33	2	38	1.70
31851282--31851414	64	2.1	65	86	1	187	27	24	13	34	1.93
31853875--31853934	29	2.0	31	93	6	106	40	30	3	26	1.72
31854743--31854825	36	2.3	36	83	6	96	40	20	4	33	1.74
31858683--31858793	27	4.1	27	77	10	95	19	13	19	46	1.83
31860811--31860887	39	1.9	39	84	2	100	35	22	20	22	1.96
31860941--31861224	41	7.0	41	80	5	306	22	19	26	31	1.98
31860941--31861254	82	3.9	81	81	4	346	22	19	26	31	1.98
31860946--31861254	163	1.9	162	86	3	442	22	19	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31860956--31861183	122	1.9	121	85	2	314	22	20	25	32	1.98
31860941--31861256	41	7.8	41	78	6	286	22	19	26	31	1.98
31862419--31862450	13	2.3	15	89	10	50	43	0	0	56	0.99
31864234--31864279	21	2.2	21	88	0	65	15	8	26	50	1.73
31866215--31866242	14	2.0	14	100	0	56	28	14	7	50	1.69
31866229--31866311	43	1.9	43	85	0	112	31	10	9	48	1.70
31866758--31866876	43	2.8	43	74	5	114	29	18	23	28	1.98
31874493--31874857	147	2.5	147	90	4	540	44	4	10	41	1.59
31874763--31874801	20	2.0	20	84	0	51	46	2	15	35	1.60
31874482--31874914	146	3.0	145	84	7	504	43	5	9	41	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230