genome.fa.s19.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  215  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63824366--63824390	13	1.9	13	100	0	50	32	0	0	68	0.90
63826347--63826575	21	10.3	22	69	17	118	40	1	1	56	1.18
63826512--63826593	22	3.6	23	82	9	96	42	0	1	56	1.07
63826502--63826571	22	3.2	22	82	13	90	42	0	0	57	0.99
63830397--63830496	43	2.3	43	81	10	132	36	29	16	19	1.93
63836902--63836946	19	2.2	20	92	7	74	24	17	6	51	1.70
63837283--63837329	23	1.9	25	83	12	62	72	2	0	25	0.96
63837703--63837761	13	4.2	13	87	12	82	61	1	0	37	1.07
63837695--63837761	28	2.4	28	81	16	86	56	2	0	40	1.14
63837744--63837782	19	2.0	20	95	5	71	58	0	0	41	0.98
63837695--63837761	15	4.8	14	78	15	59	56	2	0	40	1.14
63837745--63837813	19	3.2	21	80	15	63	55	1	1	42	1.18
63837972--63838017	24	2.0	23	87	8	67	76	4	4	15	1.11
63840362--63841028	114	5.9	111	79	6	581	32	18	21	27	1.97
63840362--63841259	227	4.0	226	80	7	843	31	18	22	27	1.97
63840822--63841225	208	1.9	209	88	2	616	32	18	21	27	1.96
63841478--63841548	14	5.0	14	69	16	56	22	1	35	40	1.63
63842689--63842735	22	2.1	22	96	0	85	27	8	23	40	1.83
63843075--63843190	36	3.2	36	70	16	114	29	6	18	46	1.72
63843042--63843242	71	2.8	71	96	1	368	25	4	18	50	1.67
63843378--63843407	14	2.1	14	100	0	60	26	13	6	53	1.64
63844087--63844165	29	2.6	31	90	4	117	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63844434--63844669	9	27.9	9	70	13	117	44	22	3	29	1.70
63844434--63844670	25	9.4	25	69	6	172	44	21	3	29	1.70
63844526--63844557	16	2.0	16	93	0	55	53	18	6	21	1.67
63844443--63844670	52	4.5	52	83	4	252	44	21	3	29	1.71
63848373--63848443	21	3.4	21	80	0	79	33	18	45	2	1.64
63848769--63849094	126	2.6	125	84	2	348	27	21	21	29	1.99
63848769--63849082	42	7.5	41	87	4	308	27	21	21	29	1.99
63848856--63849100	42	5.8	42	94	0	384	23	23	21	31	1.98
63849192--63849235	22	2.0	22	86	0	61	47	27	15	9	1.76
63868914--63868951	12	3.2	12	85	10	51	55	2	0	42	1.14
63876549--63876629	9	8.7	9	78	15	60	30	1	0	67	0.98
63876550--63876589	16	2.3	19	83	16	59	32	0	0	67	0.91
63876567--63876635	11	6.8	11	77	22	64	33	1	0	65	1.02
63876534--63876635	50	2.0	51	88	9	156	34	1	0	63	1.05
63876534--63876668	49	2.6	50	85	8	166	33	2	0	64	1.06
63876534--63876663	50	2.6	48	84	11	154	31	2	0	66	1.04
63883090--63883144	25	2.3	24	79	11	60	54	7	1	36	1.39
63887333--63887385	25	2.1	25	82	6	63	45	32	7	15	1.74
63892882--63893198	50	6.3	51	82	10	382	29	23	14	33	1.94
63892884--63893089	94	2.2	94	95	0	367	28	23	15	32	1.95
63892978--63893203	58	4.2	57	81	12	253	29	23	14	33	1.94
63904634--63904681	24	2.0	24	100	0	96	37	25	8	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63906034--63906387	166	2.1	165	82	1	422	44	20	11	24	1.84
63908872--63908905	3	11.3	3	100	0	68	67	0	0	32	0.91
63910568--63910630	24	2.5	26	76	10	67	50	1	1	46	1.20
63910581--63910630	25	2.0	24	84	11	64	54	0	0	46	1.00
63910585--63910637	27	2.0	25	82	7	61	54	0	0	45	0.99
63910600--63910641	17	2.6	16	77	7	50	57	0	0	42	0.99
63910802--63910874	36	2.0	36	94	0	128	32	12	4	50	1.59
63913163--63913199	19	1.9	19	88	0	56	21	24	32	21	1.98
63916229--63916263	16	2.2	16	89	0	52	68	0	2	28	1.04
63918043--63918207	85	2.0	84	82	8	201	27	21	21	29	1.99
63918088--63918328	129	1.9	129	85	3	333	26	21	20	31	1.98
63918219--63918502	85	3.3	85	69	12	236	28	23	17	29	1.97
63918883--63921476	46	56.4	46	88	0	3654	29	29	15	25	1.96
63922363--63922649	96	3.0	97	86	2	398	47	8	17	26	1.76
63922932--63922983	8	6.6	8	86	4	61	1	15	0	82	0.75
63922932--63922999	20	3.5	19	84	6	82	1	13	2	82	0.86
63923373--63923410	11	3.3	11	86	13	58	2	0	7	89	0.57
63923373--63923410	13	3.2	12	89	10	60	2	0	7	89	0.57
63927583--63927617	16	2.2	16	89	0	52	68	0	2	28	1.04
63929373--63929831	44	10.7	41	69	15	162	27	23	19	30	1.98
63929373--63929537	85	2.0	84	83	6	208	27	20	22	29	1.98
63929418--63929707	129	2.2	130	82	4	345	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63929500--63929836	173	1.9	173	84	4	446	27	24	18	29	1.98
63929546--63929903	173	2.1	174	82	5	422	27	24	17	29	1.97
63940538--63940594	28	2.0	29	86	3	80	49	19	15	15	1.80
63946649--63946702	25	2.2	25	86	3	74	29	1	5	62	1.28
63950054--63950259	108	1.9	105	89	2	313	33	18	18	29	1.95
63950887--63950944	30	1.9	31	85	3	82	55	1	10	32	1.44
63952415--63952448	3	11.3	3	100	0	68	67	0	0	32	0.91
63955210--63955256	17	2.6	18	83	6	51	78	4	6	10	1.06
63955219--63955258	20	2.0	20	90	4	64	80	2	5	12	0.98
63955277--63955395	3	40.0	3	75	1	87	62	2	4	31	1.28
63957316--63957403	29	3.0	29	86	0	113	20	30	37	11	1.88
63965315--63965668	166	2.1	165	82	3	417	44	20	11	24	1.84
63971156--63971207	21	2.5	21	78	3	61	21	28	26	23	1.99
63971814--63971892	38	2.1	37	81	6	88	18	11	37	31	1.87
63976856--63976909	22	2.4	22	78	9	56	40	5	1	51	1.36
63979046--63979079	12	2.8	12	86	0	50	38	5	35	20	1.77
63986245--63986283	6	6.5	6	87	0	51	15	10	53	20	1.70
63994879--63994975	40	2.4	40	81	6	106	34	7	11	47	1.67
63995175--63995235	30	2.0	30	100	0	122	42	9	6	40	1.64
63998741--63998799	8	7.5	8	76	17	61	83	0	11	5	0.81
63998741--63998799	17	3.7	16	84	10	68	83	0	11	5	0.81
64002394--64002488	50	1.9	50	93	4	165	42	25	10	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64003307--64003468	79	2.1	79	100	0	324	38	11	18	30	1.87
64007623--64007666	18	2.4	19	85	7	56	68	0	25	6	1.14
64009647--64009694	22	2.2	22	100	0	96	52	12	12	22	1.73
64015985--64016079	50	1.9	50	93	4	165	42	25	10	22	1.85
64016876--64017035	76	2.1	77	95	4	288	40	11	18	30	1.86
64021187--64021230	18	2.4	19	85	7	56	68	0	25	6	1.14
64023212--64023259	22	2.2	22	100	0	96	52	12	12	22	1.73
64029667--64029761	50	1.9	50	93	4	165	43	25	9	22	1.83
64033980--64034011	6	5.2	6	96	3	55	65	0	0	34	0.93
64043364--64043415	25	2.1	25	82	13	63	0	28	3	67	1.08
64045999--64046042	21	2.1	21	91	0	70	18	13	29	38	1.89
64046520--64046556	17	2.2	17	90	4	58	10	24	0	64	1.25
64048907--64048979	3	24.0	3	76	13	69	31	4	1	63	1.22
64052866--64052898	16	2.0	17	88	5	50	51	0	0	48	1.00
64055819--64055857	17	2.4	16	83	8	51	61	12	12	12	1.57
64057264--64057318	25	2.2	24	81	9	58	40	10	3	45	1.57
64080887--64081244	194	1.8	194	88	0	545	34	15	16	32	1.91
64089583--64089607	12	2.1	12	100	0	50	8	44	0	48	1.32
64098397--64098446	26	1.9	26	87	0	73	52	0	14	34	1.42
64101575--64101601	14	1.9	14	100	0	54	37	0	3	59	1.15
64103016--64104056	193	5.4	193	87	4	1401	33	15	17	33	1.92
64103016--64104047	374	2.7	379	84	5	1315	33	15	17	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64103597--64104056	196	2.4	193	88	1	659	33	15	17	33	1.91
64110597--64111899	241	5.5	240	87	2	1783	35	16	13	35	1.88
64110597--64111899	476	2.7	475	89	2	1932	35	16	13	35	1.88
64113528--64113566	17	2.3	17	82	8	53	38	0	5	56	1.22
64120009--64120122	60	1.9	60	87	7	169	40	4	14	40	1.66
64126696--64126728	8	4.1	8	96	0	57	3	12	36	48	1.56
64129392--64129426	14	2.5	14	90	0	52	34	17	5	42	1.73
64130584--64130815	65	3.6	64	87	4	283	46	11	8	33	1.70
64130809--64132165	676	2.0	677	92	1	2256	29	23	19	28	1.98
64139939--64139967	8	3.8	8	90	9	51	0	13	0	86	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230