genome.fa.s19.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  128  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37279214--37279240	9	3.0	9	100	0	54	33	0	11	55	1.35
37279231--37279305	33	2.2	34	92	2	125	36	6	13	44	1.70
37282020--37282059	19	2.0	20	90	4	64	15	25	12	47	1.80
37282362--37282407	20	2.3	20	84	0	56	23	19	17	39	1.92
37282354--37282427	30	2.5	30	84	8	80	22	20	18	37	1.94
37285081--37285199	12	9.6	12	73	14	66	70	4	19	5	1.25
37285068--37285187	57	2.1	55	82	10	136	69	3	20	7	1.28
37285081--37285187	6	17.7	6	66	8	56	70	3	19	6	1.26
37285084--37285140	17	3.3	17	76	13	62	70	7	17	5	1.29
37285148--37285185	13	2.8	13	82	17	51	73	0	18	7	1.06
37285067--37285185	12	10.0	12	70	19	63	68	3	19	8	1.29
37285149--37285199	21	2.4	21	74	6	50	74	1	17	5	1.11
37287049--37287094	20	2.3	20	84	0	56	23	19	17	39	1.92
37287041--37287114	30	2.5	30	84	8	80	22	20	18	37	1.94
37289389--37289435	25	1.9	24	82	4	58	53	10	17	19	1.72
37297062--37297105	13	3.5	13	90	3	72	77	6	0	15	0.97
37297062--37297105	12	3.6	12	93	6	79	77	6	0	15	0.97
37297145--37297181	17	2.2	17	95	4	67	64	5	10	18	1.43
37307819--37307883	20	3.3	19	78	18	71	35	12	27	24	1.91
37307813--37307854	10	4.2	10	84	9	59	42	11	23	21	1.86
37312361--37312530	40	4.3	40	84	1	198	23	21	30	25	1.99
37312384--37312530	79	1.9	80	86	1	215	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37313074--37313105	14	2.1	16	88	11	50	68	0	12	18	1.20
37315005--37315243	40	6.0	40	96	0	424	30	19	27	22	1.98
37324168--37324337	40	4.3	40	85	1	207	23	21	30	24	1.99
37334585--37334620	14	2.5	14	95	4	63	63	5	11	19	1.46
37337039--37337116	29	2.7	28	84	11	104	25	15	30	28	1.96
37337069--37337570	174	2.9	174	95	0	914	29	14	24	30	1.95
37348012--37348070	11	4.7	13	76	17	54	18	6	6	67	1.36
37352008--37352039	16	2.0	16	93	0	55	25	15	0	59	1.36
37353772--37353798	12	2.2	12	100	0	54	51	7	0	40	1.30
37354278--37354455	27	6.6	27	82	3	196	27	15	28	29	1.96
37354279--37354434	82	1.9	81	89	3	242	27	15	28	28	1.96
37354275--37354455	82	2.2	81	84	2	238	27	15	27	29	1.96
37354360--37354466	27	3.9	27	82	1	70	27	14	28	29	1.96
37358679--37358771	47	2.0	47	84	2	123	32	27	16	23	1.96
37361508--37361539	16	2.0	16	93	0	55	25	15	0	59	1.36
37361663--37361761	46	2.2	43	82	12	119	32	26	18	23	1.97
37361757--37361939	51	3.6	50	80	7	201	27	28	18	25	1.98
37365395--37365579	79	2.3	82	84	7	238	25	27	22	24	2.00
37365376--37365579	40	5.1	40	82	8	238	25	27	22	25	2.00
37373259--37373443	79	2.3	82	84	7	238	25	27	22	24	2.00
37373240--37373443	40	5.1	40	82	8	238	25	27	22	25	2.00
37375521--37375610	45	2.0	45	97	0	171	54	7	4	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37375762--37375811	20	2.4	22	83	10	68	38	0	32	30	1.58
37375762--37375819	11	5.5	10	80	15	64	39	0	29	31	1.57
37375762--37375825	31	2.1	31	88	5	94	40	0	28	31	1.57
37387772--37387994	79	2.8	78	81	9	247	24	26	21	26	2.00
37387772--37387994	39	5.7	40	84	8	248	24	26	21	26	2.00
37395662--37395846	40	4.7	40	84	6	225	25	27	22	24	2.00
37395662--37395846	79	2.3	82	83	7	229	25	27	22	24	2.00
37409560--37409589	3	10.0	3	100	0	60	33	33	0	33	1.58
37411005--37411286	72	3.9	72	90	1	422	55	16	6	21	1.62
37429764--37429806	21	2.0	21	86	0	59	41	2	18	37	1.63
37432660--37432726	34	1.9	35	96	3	127	47	14	2	34	1.60
37433668--37433701	17	2.0	17	94	0	59	61	2	11	23	1.43
37434106--37434160	3	18.3	3	85	7	76	0	29	1	69	0.99
37447531--37447568	17	2.2	17	90	0	58	18	5	2	73	1.14
37448817--37448843	12	2.2	12	100	0	54	0	44	33	22	1.53
37451801--37451848	20	2.3	20	79	13	53	62	16	10	10	1.53
37456490--37456537	24	2.0	24	83	0	60	12	10	16	60	1.58
37457001--37457203	101	2.0	101	99	0	397	31	15	21	31	1.94
37460917--37460978	28	2.2	29	86	11	85	11	14	6	67	1.40
37467221--37467315	25	3.8	25	85	0	109	32	21	24	22	1.98
37479444--37479514	6	11.7	6	78	3	61	21	5	0	73	1.04
37483263--37483339	36	2.1	37	87	2	111	37	10	23	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37485650--37485746	36	2.7	35	80	10	99	22	17	19	40	1.92
37486122--37486181	23	2.6	23	70	24	54	21	3	15	60	1.49
37486985--37487066	26	3.2	26	83	0	101	24	24	17	34	1.96
37501927--37501967	6	6.5	6	83	10	55	19	14	0	65	1.26
37501928--37501965	20	1.9	19	89	5	58	21	15	0	63	1.31
37501926--37501968	13	3.3	13	84	12	61	18	13	0	67	1.23
37509123--37509160	4	9.0	4	91	8	58	23	0	2	73	0.95
37509117--37509160	12	3.3	13	87	12	63	22	0	2	75	0.92
37509117--37509169	26	2.0	26	82	13	65	24	0	1	73	0.93
37512356--37512406	22	2.4	20	75	18	50	62	3	0	33	1.13
37514351--37514393	19	2.2	20	84	12	63	32	18	0	48	1.48
37534104--37534143	18	2.3	19	84	16	52	42	12	17	27	1.85
37534774--37534806	3	11.0	3	93	0	57	3	33	0	63	1.10
37539321--37539384	32	2.1	29	78	13	67	37	12	10	39	1.78
37539328--37539390	32	2.0	32	96	0	117	31	12	14	41	1.83
37540068--37540191	66	1.9	66	86	3	178	29	32	16	20	1.95
37541634--37541680	24	1.9	25	83	12	62	38	19	10	31	1.86
37545700--37545770	25	2.7	27	85	8	85	30	23	28	16	1.97
37545852--37545937	25	3.4	25	73	13	70	39	17	22	20	1.92
37553538--37553616	25	3.0	27	72	10	65	30	25	27	16	1.97
37555241--37555299	25	2.4	26	83	11	79	40	20	22	16	1.91
37557652--37557829	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37557653--37557808	82	1.9	81	88	3	233	26	15	28	29	1.96
37557649--37557829	82	2.2	81	83	2	229	27	15	27	29	1.96
37571908--37572084	27	6.6	27	83	5	205	27	14	28	29	1.95
37571909--37572063	81	1.9	81	88	5	233	27	14	28	29	1.95
37571905--37572084	81	2.2	81	83	3	229	27	15	27	30	1.96
37574111--37574260	27	5.6	27	81	3	158	29	28	15	27	1.96
37574111--37574261	81	1.9	81	87	2	223	29	27	15	27	1.96
37577682--37577794	47	2.3	49	83	3	140	29	15	24	30	1.96
37577686--37577807	49	2.6	47	82	2	145	29	14	25	30	1.95
37580160--37580198	18	2.2	17	86	13	53	33	0	20	46	1.51
37580416--37580468	23	2.3	23	93	0	97	20	20	26	32	1.98
37584447--37584472	12	2.2	12	100	0	52	30	7	15	46	1.74
37590815--37590903	23	3.9	23	96	0	160	37	4	28	30	1.77
37591957--37592021	29	2.2	31	86	10	91	32	9	21	36	1.85
37594670--37594722	23	2.4	22	76	20	56	9	18	1	69	1.25
37601046--37601106	21	3.0	21	81	6	65	31	34	3	31	1.74
37604777--37604822	18	2.5	19	96	3	85	32	6	4	56	1.45
37606063--37606109	19	2.5	19	100	0	94	31	6	4	57	1.43
37609503--37609737	99	2.3	100	81	5	260	21	29	20	28	1.98
37609503--37609737	50	4.7	50	81	1	256	21	29	20	28	1.98
37609836--37609862	13	2.1	13	100	0	54	62	7	0	29	1.22
37610071--37610128	30	1.9	30	82	6	73	29	18	10	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37615263--37615616	27	13.1	27	84	5	412	44	20	18	16	1.87
37615779--37615829	26	2.0	26	88	0	75	19	21	19	39	1.93
37615921--37615994	28	2.6	28	93	0	121	21	25	28	24	1.99
37617082--37617154	29	2.5	29	95	0	128	31	9	13	45	1.76
37622287--37622328	16	2.7	15	79	13	57	64	2	11	21	1.38
37622287--37622330	17	2.8	16	83	10	63	61	2	13	22	1.43
37633663--37633766	54	1.9	54	98	0	199	33	16	25	25	1.96
37643150--37643216	25	2.7	25	86	4	73	23	20	22	32	1.98
37643352--37643397	23	2.0	23	82	0	56	52	6	0	41	1.27
37645077--37645213	61	2.2	61	86	0	184	21	16	24	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230