genome.fa.s19.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  23  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6194708--6194739	11	2.8	11	95	4	55	62	6	3	28	1.34
6203435--6203504	6	11.7	6	92	0	104	52	34	11	1	1.46
6203431--6203504	24	3.1	24	94	0	121	54	33	10	1	1.44
6205563--6205642	30	2.5	31	80	13	83	42	2	5	50	1.37
6209498--6209553	29	1.9	29	96	0	103	35	32	21	10	1.88
6209680--6209766	39	2.2	41	83	8	108	49	10	1	39	1.44
6215265--6215304	19	2.1	19	86	9	55	30	2	0	67	1.04
6215479--6215526	20	2.3	20	79	10	53	41	2	2	54	1.24
6219908--6219950	19	2.2	20	87	4	61	62	2	0	34	1.08
6234641--6234685	22	2.0	22	82	4	54	51	4	2	42	1.34
6238112--6238301	33	5.7	32	70	13	100	30	25	12	31	1.93
6238210--6238370	35	4.7	34	71	16	118	31	24	11	32	1.91
6238154--6238370	101	2.1	101	87	1	301	30	24	12	32	1.92
6238212--6238334	33	3.6	34	78	6	101	30	25	11	32	1.91
6242159--6242190	16	1.9	17	93	6	57	53	0	0	46	1.00
6242183--6242395	61	3.4	63	69	17	194	41	2	6	49	1.41
6242145--6242437	120	2.4	120	92	2	482	42	2	5	50	1.36
6242266--6242300	18	2.0	17	88	5	52	40	0	0	60	0.97
6242386--6242420	18	2.0	17	88	5	52	45	0	0	54	0.99
6242374--6242648	147	1.9	149	96	1	509	47	2	3	46	1.33
6242533--6242567	18	2.0	17	88	5	52	45	0	0	54	0.99
6242729--6242823	45	2.1	44	88	1	136	32	27	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6242804--6242855	16	3.2	16	94	0	86	34	36	0	28	1.58
6244285--6244345	24	2.5	23	80	15	61	45	0	4	49	1.23
6246033--6246148	45	2.8	39	75	15	99	20	20	21	37	1.95
6246050--6246154	45	2.3	45	86	0	147	21	19	19	40	1.92
6248670--6248778	17	6.5	17	73	3	87	22	8	24	44	1.80
6248669--6248810	33	4.2	34	74	5	110	21	9	23	45	1.81
6248671--6248780	50	2.2	50	81	0	121	23	8	25	42	1.81
6248686--6248809	50	2.5	50	72	0	122	21	8	25	44	1.81
6254270--6254300	9	3.4	9	90	0	53	38	22	12	25	1.90
6256288--6256386	50	2.0	50	91	0	162	39	8	20	32	1.82
6264961--6265012	24	2.2	24	100	0	104	28	3	15	51	1.60
6274474--6274503	14	2.1	14	93	0	51	36	0	13	50	1.42
6274667--6274699	14	2.4	14	95	5	59	66	0	6	27	1.15
6283164--6283210	24	2.0	24	83	4	60	40	10	8	40	1.70
6292491--6292522	6	5.3	6	96	0	55	81	0	0	18	0.70
6295221--6295292	35	2.0	36	83	2	92	66	0	1	31	1.00
6297072--6297123	19	2.8	19	76	2	61	61	1	1	34	1.18
6304150--6304202	24	2.2	24	77	9	56	50	0	7	41	1.30
6307559--6307690	27	4.9	27	81	0	156	20	18	20	40	1.91
6308197--6308339	73	2.0	73	91	2	234	35	16	20	27	1.94
6309166--6309223	27	2.2	26	78	6	62	56	10	8	24	1.60
6311317--6311684	84	4.4	85	67	16	235	26	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6311359--6311684	43	7.7	44	66	17	159	25	23	20	30	1.99
6311274--6311697	127	3.3	127	92	1	690	25	23	21	29	1.99
6311750--6311922	87	2.0	87	85	2	231	22	22	23	31	1.99
6311779--6312035	87	3.0	87	85	2	322	22	21	23	32	1.98
6311876--6312035	43	3.7	43	89	2	241	20	23	25	31	1.98
6313250--6313307	15	4.2	13	80	20	64	13	10	0	75	1.04
6313250--6313307	14	4.1	14	82	8	73	13	10	0	75	1.04
6313250--6313307	29	2.0	28	87	9	82	13	10	0	75	1.04
6317419--6317573	73	2.1	73	92	0	256	36	18	20	24	1.94
6318399--6318456	27	2.2	26	78	6	62	56	10	8	24	1.60
6319496--6319529	11	3.4	10	88	11	52	82	2	5	8	0.93
6331548--6331614	4	16.2	4	73	11	55	1	28	2	67	1.14
6331542--6331606	21	3.1	21	80	14	80	0	29	3	67	1.05
6331544--6331604	25	2.4	26	86	8	81	0	27	3	68	1.05
6331548--6331612	25	2.6	25	83	7	78	1	29	3	66	1.16
6331637--6331678	5	8.4	5	100	0	84	59	0	0	40	0.97
6332849--6332898	21	2.3	22	82	6	57	46	12	14	28	1.79
6333107--6333132	9	2.9	9	100	0	52	23	0	53	23	1.46
6335244--6335274	15	2.0	16	93	6	55	35	0	0	64	0.94
6336486--6336549	22	2.9	22	88	0	83	17	14	12	56	1.68
6338856--6338923	31	2.2	31	78	5	75	29	20	5	44	1.75
6339421--6339490	32	2.2	32	84	0	86	47	14	12	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6340782--6340821	11	3.6	11	82	0	53	10	0	10	80	0.92
6341054--6341089	11	3.0	13	80	19	51	63	0	0	36	0.94
6342353--6342414	30	2.1	29	90	3	97	56	11	3	29	1.50
6351649--6351792	73	2.0	73	90	0	225	30	22	16	30	1.96
6353017--6353065	17	2.8	17	84	9	55	57	6	0	36	1.24
6353031--6353065	17	2.1	17	94	0	61	54	8	0	37	1.31
6371144--6371195	27	1.9	27	92	0	86	30	19	5	44	1.74
6373013--6373060	21	2.3	21	81	0	60	45	8	14	31	1.74
6377387--6377431	3	15.0	3	95	0	54	24	0	42	33	1.55
6380184--6380235	18	2.9	17	77	8	59	21	3	0	75	0.97
6393846--6393874	15	1.9	15	100	0	58	55	0	17	27	1.42
6395757--6395940	50	3.7	49	80	2	224	26	18	22	33	1.97
6395754--6395939	100	1.9	100	93	0	318	25	19	22	32	1.97
6407480--6407586	43	2.5	44	80	7	121	28	16	22	32	1.96
6409051--6409142	24	3.8	25	75	15	77	33	2	4	59	1.29
6420181--6420235	26	2.1	25	80	12	58	36	9	14	40	1.78
6424409--6424616	100	2.1	100	97	0	389	28	22	12	35	1.92
6426273--6426316	21	2.1	21	83	8	54	36	2	22	38	1.67
6426685--6426900	49	4.4	48	73	10	159	18	25	21	35	1.95
6426685--6426900	25	8.8	26	75	11	129	18	25	21	35	1.95
6426651--6426802	50	3.1	49	73	9	128	19	23	19	38	1.93
6426663--6426873	49	4.3	49	73	12	157	18	23	21	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6426657--6426873	99	2.2	99	81	5	235	18	23	20	37	1.94
6426834--6426948	25	4.6	25	74	9	85	22	22	20	33	1.97
6441430--6441468	3	13.0	3	100	0	78	33	0	0	66	0.92
6441662--6441779	41	2.8	41	88	2	164	27	16	20	34	1.95
6447717--6447746	15	2.1	15	93	6	53	60	26	0	13	1.34
6450843--6450901	30	2.0	30	96	0	109	45	13	11	28	1.79
6458926--6459519	295	2.0	295	98	0	1161	31	22	21	24	1.98
6460591--6460641	21	2.4	21	96	0	93	19	0	47	33	1.50
6462063--6462109	22	2.1	22	96	0	85	40	2	12	44	1.54
6463310--6463354	18	2.5	18	96	0	81	48	11	0	40	1.39
6463314--6463354	9	4.6	9	81	0	55	46	12	0	41	1.41
6463301--6463815	232	2.2	232	97	0	987	45	13	0	40	1.49
6463607--6463640	17	1.9	18	88	5	52	38	5	0	55	1.24
6463781--6464223	9	49.2	9	77	10	433	46	18	0	34	1.53
6463417--6464146	232	3.1	231	81	9	664	46	16	0	36	1.54
6469737--6469784	21	2.3	21	88	0	69	31	20	45	2	1.63
6470201--6470296	42	2.3	43	90	1	149	28	17	23	30	1.97
6470217--6470510	43	7.0	42	84	5	346	24	22	21	31	1.98
6470217--6470510	126	2.3	127	83	5	355	24	22	21	31	1.98
6472439--6472474	17	2.1	17	94	0	63	25	13	16	44	1.85
6482837--6482870	16	2.1	16	88	0	50	50	14	17	17	1.79
6485673--6485713	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6487619--6487652	16	2.1	16	88	0	50	50	14	17	17	1.79
6492834--6492869	18	2.0	18	88	0	54	44	0	2	52	1.15
6505820--6505856	9	4.1	9	86	13	58	32	10	10	45	1.74
6509195--6509305	41	2.7	41	86	4	136	36	18	21	23	1.95
6509216--6509305	41	2.2	42	89	2	137	32	21	21	25	1.98
6509720--6509785	21	3.1	21	86	0	87	6	48	15	30	1.69
6514985--6515048	29	2.2	29	81	10	78	18	15	6	59	1.57
6515060--6515137	3	26.3	3	76	7	79	32	2	3	61	1.27
6532053--6532152	40	2.5	40	78	4	112	15	21	21	43	1.88
6532053--6532132	39	2.0	40	85	2	108	16	21	21	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230