genome.fa.s19.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  137  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40216130--40216209	27	3.0	26	94	5	142	27	30	23	18	1.98
40216188--40216324	42	3.5	41	73	17	146	33	27	18	21	1.96
40216186--40216362	75	2.4	75	93	1	293	32	26	19	21	1.97
40220634--40220658	4	6.2	4	100	0	50	52	0	24	24	1.48
40236482--40236705	40	5.7	40	83	6	269	25	27	21	25	2.00
40236482--40236705	79	2.8	80	82	7	269	25	27	21	25	2.00
40244512--40244734	119	1.9	120	82	6	283	26	27	21	24	1.99
40244510--40244734	40	5.7	40	83	6	269	26	28	21	24	1.99
40254633--40254739	54	2.0	54	81	3	126	22	32	17	27	1.96
40256232--40256270	19	2.1	18	85	4	51	33	17	0	48	1.48
40259246--40259415	27	6.3	27	84	0	214	30	22	13	32	1.93
40262289--40262326	18	2.1	19	85	14	53	63	7	5	23	1.42
40262432--40262483	27	1.9	27	88	0	77	38	17	5	38	1.74
40270049--40270202	27	5.7	27	74	3	130	29	22	14	33	1.94
40270087--40270202	54	2.1	55	84	4	155	26	22	16	34	1.95
40274634--40275298	331	2.0	332	98	0	1278	30	13	22	32	1.93
40277122--40277162	12	3.4	13	80	16	52	19	26	4	48	1.69
40285110--40285361	42	6.1	42	87	1	312	20	19	23	36	1.95
40285368--40285398	16	1.9	16	100	0	62	19	19	9	51	1.74
40285998--40286401	145	2.8	147	82	9	513	45	3	8	42	1.53
40285998--40286390	139	2.7	137	81	11	375	45	3	8	41	1.52
40287885--40287935	25	2.0	25	100	0	102	41	11	3	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40287893--40287934	13	3.3	13	73	6	50	40	9	4	45	1.58
40291820--40291867	25	1.9	25	83	8	62	18	6	12	62	1.50
40292720--40292780	32	1.9	32	86	0	86	47	11	13	27	1.77
40300997--40301089	20	4.7	20	76	0	87	12	26	21	38	1.90
40300999--40301089	40	2.3	40	86	0	128	13	27	21	37	1.91
40302489--40302729	50	4.8	50	89	0	338	22	32	20	24	1.98
40305934--40306111	27	6.6	27	84	3	205	29	28	15	26	1.96
40305955--40306110	82	1.9	81	88	3	233	29	28	15	26	1.96
40306597--40306623	12	2.2	12	100	0	54	40	0	7	51	1.30
40309124--40309152	6	5.0	6	95	4	51	68	0	0	31	0.89
40309346--40309427	28	2.9	28	87	0	128	32	21	20	24	1.98
40309779--40310186	27	15.1	27	76	5	308	17	18	21	42	1.89
40316098--40316146	21	2.3	22	89	3	73	44	24	10	20	1.82
40317538--40317593	20	2.8	21	78	15	64	25	30	12	32	1.92
40317560--40317616	20	2.8	20	81	0	60	28	24	14	33	1.94
40322278--40322455	27	6.6	27	82	3	196	26	15	28	29	1.96
40322279--40322434	82	1.9	81	86	3	224	26	16	28	28	1.97
40322275--40322455	82	2.2	81	82	2	220	27	16	27	29	1.97
40324880--40324939	28	2.1	28	81	6	68	31	16	8	43	1.78
40325854--40325900	20	2.4	19	92	7	76	72	2	0	25	0.96
40326199--40326258	3	19.7	3	74	16	52	61	3	1	33	1.22
40326199--40326244	14	3.4	14	83	16	53	65	2	0	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40326201--40326243	11	4.1	10	83	16	52	67	2	0	30	1.03
40326807--40326889	41	2.0	41	97	0	157	44	22	4	27	1.73
40327565--40328192	127	5.0	127	91	1	965	27	22	21	28	1.99
40327641--40327966	44	7.6	44	68	12	205	26	22	21	29	1.99
40327578--40328165	40	14.0	41	67	13	169	28	22	20	28	1.99
40327565--40328172	83	7.2	84	68	12	260	27	22	21	28	1.99
40333917--40333943	12	2.2	12	100	0	54	51	7	0	40	1.30
40334425--40334602	27	6.6	27	82	3	196	26	15	28	29	1.96
40334426--40334581	82	1.9	81	86	3	224	26	16	28	28	1.97
40334422--40334602	82	2.2	81	82	2	220	27	16	27	29	1.97
40339379--40339406	12	2.3	12	100	0	56	78	7	14	0	0.95
40344612--40344728	43	2.8	40	78	10	128	23	23	25	28	1.99
40345005--40345274	40	6.5	43	73	7	229	26	21	23	27	1.99
40345000--40345274	82	3.3	82	96	0	487	26	22	23	27	1.99
40361218--40361259	20	2.1	20	91	8	68	26	0	2	71	0.98
40361250--40361290	8	5.2	8	85	14	59	12	0	2	85	0.70
40361230--40361281	14	3.7	14	84	0	77	19	0	0	80	0.71
40361230--40361290	28	2.1	29	84	3	79	18	0	1	80	0.80
40361218--40361289	14	5.1	14	80	6	65	20	0	2	76	0.91
40367952--40368107	82	1.9	81	85	3	215	26	16	28	28	1.97
40367951--40368104	55	2.9	52	82	7	175	27	16	27	27	1.97
40367952--40368107	27	5.7	27	81	6	163	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40367944--40368128	27	6.8	27	75	9	101	26	16	28	29	1.97
40367944--40368128	82	2.3	81	78	2	210	26	16	28	29	1.97
40375916--40376071	82	1.9	81	85	3	215	26	16	28	28	1.97
40375915--40376068	55	2.9	52	82	7	175	27	16	27	27	1.97
40375916--40376071	27	5.7	27	81	6	163	26	16	28	28	1.97
40375908--40376092	27	6.8	27	75	9	101	26	16	28	29	1.97
40375908--40376092	82	2.3	81	78	2	210	26	16	28	29	1.97
40378699--40378749	14	3.6	14	78	7	50	74	1	0	23	0.92
40378707--40378753	20	2.3	20	82	7	60	72	0	0	27	0.85
40378718--40378762	19	2.3	18	85	14	63	71	2	0	26	0.98
40378718--40378762	20	2.3	20	88	11	67	71	2	0	26	0.98
40379067--40379104	18	2.1	19	90	5	60	68	2	0	28	1.03
40390256--40390597	171	2.0	171	99	0	675	26	20	16	36	1.93
40390747--40390792	21	2.2	21	92	0	74	36	32	13	17	1.88
40408357--40408434	25	3.2	25	76	10	79	20	24	20	34	1.96
40408438--40408508	27	2.6	26	91	4	106	19	22	26	30	1.98
40410946--40410978	16	2.1	16	88	5	50	45	6	0	48	1.27
40413593--40413682	46	2.0	46	90	0	144	58	11	6	23	1.55
40425760--40425928	74	2.3	75	89	1	259	42	8	13	34	1.76
40430681--40430767	43	2.0	43	100	0	174	28	25	22	22	1.99
40433171--40433204	12	2.9	12	95	4	61	64	0	0	35	0.94
40435642--40435888	50	4.8	50	78	5	210	27	21	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40437374--40437509	69	2.0	69	89	0	209	26	20	10	42	1.84
40441352--40441605	44	5.5	44	70	17	126	28	22	18	31	1.97
40441334--40442040	142	5.0	142	93	1	1164	26	22	18	32	1.97
40441532--40442031	44	10.7	44	66	17	222	26	22	19	32	1.97
40441334--40442047	285	2.5	284	91	1	1187	26	22	18	32	1.97
40441954--40442047	44	2.1	44	88	3	136	26	22	22	28	1.99
40461760--40461794	3	11.7	3	100	0	70	31	0	0	68	0.90
40464479--40464865	51	7.7	50	78	7	331	29	25	15	29	1.96
40464483--40464865	102	3.8	103	83	8	407	29	25	15	29	1.96
40471761--40471806	23	2.0	23	100	0	92	21	13	17	47	1.81
40484757--40484811	20	2.8	20	74	0	56	16	34	14	34	1.89
40494861--40495384	27	19.6	26	79	11	449	20	17	20	41	1.90
40505562--40505643	6	13.3	6	79	5	65	21	3	2	71	1.13
40505541--40505643	19	5.7	18	75	8	68	20	4	2	71	1.17
40505563--40505630	25	2.7	25	86	0	91	23	4	1	70	1.13
40519777--40519812	16	2.2	17	90	5	56	11	52	0	36	1.37
40529264--40529301	6	6.5	6	96	3	69	15	0	0	84	0.63
40529494--40529567	21	3.5	20	76	20	62	27	8	8	56	1.56
40529722--40529776	27	2.1	25	83	12	67	30	7	1	60	1.35
40529784--40529834	23	2.2	24	79	10	61	35	3	5	54	1.43
40531309--40531342	16	2.1	16	94	0	59	20	11	20	47	1.81
40535753--40535853	7	14.6	7	74	16	70	79	11	0	7	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40535760--40535847	16	6.2	15	77	20	84	77	13	1	7	1.04
40535773--40535858	19	4.3	19	77	20	86	79	13	0	6	0.93
40535755--40535816	27	2.2	28	88	11	101	77	9	1	11	1.06
40535764--40535860	8	11.4	8	76	15	61	78	14	1	6	1.00
40536285--40536423	48	2.9	47	80	5	154	46	21	20	10	1.81
40537626--40538432	51	15.9	51	81	3	863	29	17	24	28	1.97
40545812--40546036	40	5.7	40	86	4	294	24	22	27	26	2.00
40545812--40546069	119	2.2	119	81	6	283	25	21	27	25	1.99
40548486--40548520	16	2.1	17	89	5	54	11	51	0	37	1.38
40552612--40552666	25	2.2	25	78	9	60	50	21	10	16	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230