Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  13  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3535054--3535109
28
2.0
29
89
3
87
42
10
3
42
1.56
3535054--3535109
29
2.0
28
89
3
85
42
10
3
42
1.56
3535089--3535135
19
2.6
18
83
6
58
59
4
12
23
1.51
3536362--3536512
61
2.5
61
81
2
160
38
9
5
45
1.62
3545230--3545255
9
2.9
9
100
0
52
46
7
0
46
1.31
3546699--3546736
18
2.1
18
95
0
67
0
55
0
44
0.99
3546796--3546845
25
2.0
25
88
0
73
4
30
4
62
1.32
3550175--3550227
15
3.2
15
80
17
52
54
1
1
41
1.22
3550258--3550296
20
2.0
20
94
0
69
48
0
2
48
1.15
3550395--3550434
20
2.0
20
90
0
62
50
12
10
27
1.72
3550383--3550449
34
1.9
35
90
3
109
46
13
8
31
1.74
3550418--3550457
14
2.9
14
84
0
53
42
17
7
32
1.77
3551587--3551800
88
2.4
87
78
9
229
42
16
8
31
1.78
3551934--3552032
28
3.6
27
74
12
92
62
1
3
33
1.17
3551910--3552033
9
13.6
9
72
16
85
66
1
2
29
1.14
3551947--3552033
19
4.6
19
81
4
95
64
1
1
33
1.09
3551911--3552004
8
10.6
8
73
22
55
67
2
2
28
1.14
3551924--3552043
57
2.1
59
83
9
149
63
1
2
32
1.18
3552215--3552286
19
3.5
20
76
12
67
27
6
4
61
1.41
3552261--3552332
28
2.5
30
78
15
80
29
6
1
62
1.30
3552278--3552324
19
2.5
20
72
10
53
34
4
0
61
1.15
3552278--3552328
9
5.6
9
79
9
50
31
3
0
64
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3552357--3552410
19
2.8
20
86
8
76
37
1
0
61
1.07
3552352--3552423
9
7.8
10
74
13
66
34
1
0
63
1.03
3570919--3570967
21
2.2
22
82
13
57
48
0
6
44
1.27
3584242--3584276
15
2.2
16
90
5
54
45
0
0
54
0.99
3597234--3597268
18
1.9
18
94
0
61
25
37
22
14
1.92
3601435--3601514
37
2.2
37
95
0
142
20
20
18
41
1.91
3608735--3608773
20
1.9
21
94
5
71
23
25
30
20
1.98
3609834--3609883
26
1.9
26
95
0
91
40
0
10
50
1.36
3610701--3610734
16
2.2
15
94
5
59
85
0
14
0
0.60
3610716--3611295
119
5.1
114
82
9
707
37
13
16
33
1.87
3611301--3611882
117
5.1
115
85
6
781
33
16
13
36
1.88
3611301--3611882
223
2.5
227
87
5
816
33
16
13
36
1.88
3614434--3614492
30
2.0
28
87
6
82
33
22
10
33
1.87
3618581--3618610
5
6.0
5
92
0
51
76
0
3
20
0.92
3619785--3619819
18
2.0
17
88
5
52
54
0
0
45
0.99
3619672--3619988
157
2.0
157
95
0
571
44
3
5
47
1.41
3619920--3620217
120
2.5
121
90
5
462
49
5
2
42
1.39
3620041--3620092
15
3.6
15
80
12
56
53
1
0
44
1.11
3620258--3620305
26
1.9
25
84
16
64
52
2
0
45
1.12
3620213--3620441
92
2.5
92
82
8
227
48
3
3
44
1.38
3624169--3624213
23
2.0
23
82
8
56
46
2
6
44
1.42
3628430--3628466
17
2.1
19
90
10
60
64
2
0
32
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3629376--3629468
31
3.1
30
80
12
84
34
7
8
49
1.62
3629998--3630042
22
2.2
19
84
11
54
77
2
2
17
0.97
3632079--3633032
475
2.0
475
100
0
1908
40
16
15
26
1.89
3634734--3634768
18
2.0
18
88
5
54
54
5
8
31
1.54
3637248--3637296
13
3.9
13
75
20
50
59
0
0
40
0.98
3664062--3664646
153
3.9
151
88
4
833
30
9
7
52
1.61
3664062--3664646
305
1.9
300
87
4
863
30
9
7
52
1.61
3664641--3665545
306
3.0
304
88
4
1315
52
7
8
30
1.61
3664642--3665552
152
6.0
152
89
4
1264
52
7
9
30
1.61
3666829--3666909
32
2.5
33
82
11
105
30
16
7
45
1.74
3667515--3667642
63
2.0
63
96
0
238
45
12
11
30
1.78
3680012--3680179
24
6.9
24
67
18
82
34
22
26
16
1.95
3682519--3682565
21
2.3
21
78
10
53
46
0
4
48
1.21
3686005--3686038
13
2.5
14
90
4
52
58
2
0
38
1.13
3688074--3688544
20
23.6
20
66
13
105
21
17
8
52
1.72
3688202--3688260
17
3.3
17
80
7
55
23
18
3
54
1.59
3688061--3688384
40
8.1
40
66
11
119
21
19
7
51
1.71
3688245--3688425
82
2.2
82
89
0
272
20
18
9
51
1.73
3688309--3688427
42
2.9
41
73
10
118
21
15
9
53
1.69
3688449--3688502
19
2.7
21
75
11
60
18
14
5
61
1.52
3691445--3691499
29
1.9
28
85
3
74
60
1
9
29
1.38
3701656--3701702
21
2.2
22
92
3
78
21
38
19
21
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3706534--3706565
3
10.7
3
93
0
55
28
0
0
71
0.86
3707137--3707214
37
2.1
37
88
2
113
12
11
25
50
1.74
3707149--3707220
37
2.0
36
94
2
126
12
11
27
48
1.75
3709260--3709627
184
2.0
184
95
0
664
22
11
18
48
1.79
3715862--3715910
24
2.0
24
92
0
80
28
20
10
40
1.85
3716205--3716266
31
2.0
31
87
0
88
46
1
8
43
1.42
3716472--3716526
29
1.9
28
88
3
83
25
5
12
56
1.58
3716973--3717018
16
2.6
18
77
16
51
69
0
0
30
0.89
3717501--3717525
2
12.5
2
100
0
50
52
48
0
0
1.00
3725357--3725398
17
2.6
15
88
11
57
28
0
2
69
1.01
3731225--3731416
102
1.9
102
84
2
260
38
25
9
26
1.87
3734480--3734544
33
2.0
33
84
6
87
43
13
7
35
1.73
3739580--3739662
31
2.6
31
77
5
87
46
4
3
44
1.42
3740891--3740957
28
2.4
28
92
0
107
25
20
26
26
1.99
3744515--3744692
88
2.0
88
95
0
320
44
6
19
30
1.75
3746453--3746638
75
2.5
75
95
0
336
21
18
27
32
1.97
3746500--3746636
42
3.5
41
77
17
173
21
18
27
32
1.97
3746539--3746740
102
2.0
102
95
1
361
20
20
28
30
1.98
3746464--3746952
177
2.8
176
96
1
888
20
20
28
31
1.97
3746641--3746815
75
2.3
75
96
1
316
20
20
28
31
1.97
3746716--3746917
102
2.0
102
96
0
368
19
20
28
30
1.97
3748596--3748660
22
3.0
22
84
8
87
18
23
16
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3753758--3753878
23
5.3
23
93
0
179
30
25
23
20
1.98
3755801--3755851
17
2.8
19
80
17
63
27
0
0
72
0.85
3755801--3755847
10
4.7
10
82
12
53
25
0
0
74
0.82
3758192--3758242
6
8.7
6
84
4
68
76
1
0
21
0.88
3758183--3758242
29
2.1
29
100
0
120
71
3
0
25
1.01
3758183--3758231
17
3.2
17
75
24
63
69
4
0
26
1.06
3758198--3758244
23
2.0
23
91
0
76
74
4
0
21
0.99
3761587--3761647
22
2.8
20
73
11
50
62
1
1
34
1.15
3766586--3766746
52
3.0
54
82
8
188
20
16
21
41
1.90
3766590--3766746
55
3.0
53
84
5
185
20
17
20
42
1.90
3767589--3767619
15
2.0
16
93
6
55
3
51
38
6
1.44
3767635--3767668
14
2.5
14
90
4
52
20
0
0
79
0.73
3767635--3767668
13
2.5
13
90
9
50
20
0
0
79
0.73
3774321--3774391
19
3.8
18
72
5
61
32
2
1
63
1.18
3774408--3774444
17
2.1
19
85
14
53
24
0
2
72
0.97
3774517--3774665
10
14.9
10
68
15
85
37
3
2
56
1.30
3774574--3774632
27
2.2
27
84
6
75
38
1
3
55
1.26
3774570--3774656
9
10.1
8
70
21
52
39
2
2
56
1.25
3774526--3774694
10
16.7
10
68
16
57
36
3
2
56
1.32
3781396--3781485
40
2.3
39
86
9
128
53
6
1
38
1.35
3782342--3782388
20
2.3
21
89
10
71
74
0
10
14
1.07
3786210--3786499
43
6.8
43
81
2
307
27
33
15
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3786189--3786499
127
2.4
128
83
6
382
27
32
16
23
1.96
3786496--3786574
40
2.0
40
82
9
99
50
5
7
36
1.53
3790688--3790782
48
2.0
45
86
9
129
40
25
3
31
1.71
3790956--3791150
41
4.9
41
83
5
231
18
23
21
35
1.95
3790956--3791112
81
2.0
81
88
3
237
20
23
21
34
1.97
3806729--3806754
11
2.4
11
100
0
52
53
0
7
38
1.30
3806738--3806838
16
5.7
17
71
17
71
60
0
1
37
1.08
3811735--3811815
31
2.7
29
81
11
83
39
14
1
44
1.54
3818871--3818938
10
6.4
10
73
17
57
73
4
20
1
1.08
3818871--3818938
15
4.2
16
76
12
77
73
4
20
1
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230