genome.fa.s19.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  176  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52691689--52691733	21	2.1	23	88	12	69	68	8	8	13	1.38
52694931--52695090	32	4.9	32	92	2	239	17	25	18	39	1.92
52697048--52697099	20	2.8	18	76	21	54	51	7	1	38	1.42
52704065--52704104	21	1.9	21	85	10	55	60	0	10	30	1.30
52704082--52704110	12	2.4	12	100	0	58	58	0	6	34	1.25
52718922--52718982	26	2.4	26	86	2	79	44	11	6	37	1.67
52719138--52719192	25	2.2	25	81	12	60	49	5	1	43	1.36
52721885--52721919	16	2.2	16	89	0	52	62	22	0	14	1.31
52721891--52721934	22	2.0	22	81	0	52	61	25	0	13	1.32
52723780--52723832	21	2.5	21	90	6	81	30	35	9	24	1.87
52725041--52725105	29	2.2	29	83	5	76	53	13	10	21	1.70
52725041--52725128	31	2.9	29	79	6	86	53	12	12	21	1.71
52726868--52726914	20	2.3	20	92	0	76	61	2	2	34	1.20
52726940--52726991	10	5.2	10	77	9	61	65	0	0	34	0.93
52726842--52726991	20	7.7	19	69	16	69	64	2	3	30	1.20
52732249--52732298	25	2.0	25	96	0	91	16	22	32	30	1.95
52732254--52732296	13	3.4	13	74	6	52	18	20	32	27	1.96
52737358--52737386	9	3.0	10	90	10	51	58	0	20	20	1.39
52737648--52737716	26	2.7	26	88	8	97	36	8	20	34	1.83
52746443--52746485	19	2.3	19	88	8	61	27	2	2	67	1.15
52746456--52746508	21	2.6	21	82	8	56	26	3	1	67	1.17
52750703--52750755	13	4.0	13	82	4	70	33	1	7	56	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52750702--52750787	27	3.2	27	78	4	93	34	3	6	54	1.44
52750791--52750824	15	2.3	15	94	0	59	41	14	2	41	1.61
52750952--52751061	13	8.6	13	76	15	86	39	3	4	52	1.39
52750975--52751070	40	2.4	40	87	6	133	36	4	4	55	1.39
52750975--52751070	27	3.6	26	82	2	111	36	4	4	55	1.39
52750975--52751070	13	7.2	13	76	13	88	36	4	4	55	1.39
52751106--52751139	15	2.3	15	94	0	59	41	14	2	41	1.61
52751300--52751387	40	2.2	40	91	4	142	36	3	4	55	1.37
52751320--52751378	27	2.2	26	90	3	91	37	3	3	55	1.33
52750703--52751441	317	2.3	315	97	0	1381	37	6	5	51	1.50
52751254--52751387	13	10.2	13	74	11	96	38	5	4	52	1.44
52754645--52754692	25	1.9	25	100	0	96	39	4	8	47	1.53
52754764--52754797	16	2.1	16	94	0	59	50	5	2	41	1.42
52759718--52759746	12	2.3	13	94	5	51	13	0	3	82	0.79
52759931--52759991	32	2.0	30	84	9	79	39	6	1	52	1.37
52760488--52760815	109	3.0	109	93	0	543	31	17	18	33	1.94
52766548--52766578	16	1.9	16	93	0	53	19	16	38	25	1.92
52772113--52772713	44	13.8	44	65	13	213	29	18	24	27	1.98
52772235--52772583	87	4.0	87	67	11	212	28	19	25	26	1.99
52772108--52772778	131	5.1	131	91	1	1076	29	19	24	27	1.98
52774415--52774443	12	2.3	13	94	5	51	13	0	3	82	0.79
52774615--52774650	16	2.2	17	90	5	56	36	11	0	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52774622--52774682	32	2.0	30	84	9	79	39	6	1	52	1.37
52774750--52774783	16	2.2	15	89	5	50	38	2	0	58	1.13
52778976--52779033	29	2.0	29	96	0	107	36	0	29	34	1.58
52779687--52779733	24	1.9	25	83	12	62	17	21	19	42	1.89
52779687--52779733	25	1.9	25	83	12	62	17	21	19	42	1.89
52779791--52779891	26	3.9	25	87	5	112	16	21	19	41	1.90
52779961--52780022	24	2.6	24	77	10	72	16	20	22	40	1.91
52779969--52780079	25	4.5	24	70	11	84	18	19	20	40	1.92
52788208--52788395	81	2.3	82	88	5	267	36	16	28	18	1.93
52788208--52788395	41	4.6	41	88	4	258	36	16	28	18	1.93
52788274--52788337	20	3.2	20	68	4	65	39	17	31	12	1.87
52800618--52800648	14	2.3	13	94	5	53	45	6	0	48	1.28
52800762--52801165	215	1.9	216	87	1	605	32	16	10	40	1.83
52803684--52803728	15	2.9	17	71	25	53	37	26	6	28	1.82
52808103--52808159	28	2.0	28	83	12	73	17	1	3	77	1.00
52808102--52808155	15	3.4	16	80	12	58	16	1	3	77	1.00
52809000--52809036	9	4.1	9	92	0	65	45	13	10	29	1.77
52815457--52815482	5	5.2	5	100	0	52	38	19	19	23	1.93
52815431--52815482	26	2.0	26	81	7	61	34	15	26	23	1.94
52816126--52816185	30	2.0	31	86	3	86	40	0	40	20	1.52
52816321--52816361	21	2.0	21	85	9	57	43	0	34	21	1.53
52816399--52816435	9	4.1	9	85	0	56	29	8	13	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52818678--52818789	27	4.2	27	80	5	120	31	12	22	33	1.91
52820805--52820834	2	15.0	2	92	0	51	53	0	46	0	1.00
52826220--52826277	18	3.2	18	78	11	73	41	3	0	55	1.17
52826227--52826282	18	3.0	19	81	5	78	33	3	0	62	1.12
52837846--52837898	12	4.5	12	90	4	90	15	15	16	52	1.74
52837977--52838028	12	4.2	12	76	11	52	30	15	11	42	1.82
52837988--52838051	24	2.7	23	88	7	85	32	12	15	39	1.85
52838017--52838063	23	2.0	23	84	8	60	40	10	17	31	1.83
52839719--52839782	27	2.4	28	80	15	73	62	0	6	31	1.20
52841049--52841106	23	2.5	23	86	8	73	37	0	24	37	1.56
52843006--52843069	33	1.9	34	84	9	87	34	21	9	34	1.86
52851922--52851982	25	2.6	23	78	5	59	59	9	3	27	1.45
52852165--52852211	21	2.2	21	85	7	60	59	2	12	25	1.45
52856873--52857043	86	2.0	86	93	2	290	39	15	12	31	1.86
52861299--52861350	22	2.4	22	80	0	59	44	15	19	21	1.87
52861340--52861483	32	4.5	33	77	10	138	40	19	18	22	1.92
52861340--52861480	64	2.2	64	84	5	187	40	19	17	22	1.91
52861677--52861706	15	2.0	15	93	0	51	46	30	13	10	1.75
52861653--52861731	24	3.3	24	85	0	122	45	31	10	12	1.75
52861712--52861760	24	2.0	24	88	0	71	42	26	8	22	1.81
52861797--52861988	53	3.6	54	82	3	165	25	21	18	34	1.96
52861794--52862000	27	7.8	26	77	4	171	25	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52861777--52861988	80	2.7	80	85	2	248	25	22	18	33	1.96
52861961--52862107	54	2.7	55	83	6	176	25	19	18	37	1.94
52861995--52862107	27	4.2	26	87	6	145	24	18	17	38	1.92
52863990--52864042	21	2.5	21	93	0	88	33	20	16	28	1.95
52864377--52864428	24	2.2	24	89	0	77	55	9	1	32	1.43
52866348--52866399	24	2.2	24	89	0	77	55	9	1	32	1.43
52866627--52866660	15	2.3	15	100	0	68	35	17	17	29	1.93
52866654--52866720	34	1.9	34	87	6	98	38	16	13	31	1.87
52869658--52870459	150	5.3	151	91	3	1226	30	9	7	52	1.61
52870463--52873295	151	18.8	151	81	8	2968	50	7	9	31	1.64
52874085--52874136	11	4.7	11	75	17	54	25	28	1	44	1.65
52874085--52874134	22	2.3	22	86	6	66	24	30	2	44	1.65
52874096--52874195	51	2.0	51	89	0	155	26	26	2	46	1.64
52876459--52876579	49	2.5	49	97	0	224	45	2	9	42	1.49
52880950--52881130	42	4.3	42	70	14	138	29	20	19	30	1.97
52881564--52881702	45	3.1	45	70	8	131	26	28	19	25	1.99
52881580--52881714	44	3.1	44	71	12	141	25	27	20	25	1.99
52881550--52881722	88	2.0	88	91	0	283	24	27	21	26	1.99
52882958--52883010	8	6.5	8	81	18	65	13	11	0	75	1.05
52882965--52882991	14	1.9	14	100	0	54	11	7	0	81	0.87
52883472--52883500	13	2.3	13	94	5	51	0	10	6	82	0.83
52889763--52889825	33	1.9	33	86	0	90	61	3	1	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52889760--52889808	3	16.3	3	87	8	73	63	0	0	36	0.95
52890400--52890434	14	2.4	14	90	4	52	0	2	8	88	0.61
52891904--52891945	23	1.9	22	90	9	68	50	0	2	47	1.14
52891908--52891955	23	2.2	22	85	14	64	50	0	2	47	1.12
52897854--52897894	21	2.0	21	85	0	55	46	0	34	19	1.50
52902182--52902526	46	7.6	46	92	2	556	34	15	21	29	1.93
52914333--52914369	20	1.9	19	89	10	58	43	0	32	24	1.55
52914693--52914729	9	4.1	9	92	0	65	29	10	13	45	1.77
52916252--52916290	19	2.1	19	100	0	78	23	20	10	46	1.81
52918787--52918823	15	2.5	15	95	0	65	35	18	13	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230