genome.fa.s19.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  140  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41211595--41211676	29	2.8	28	76	7	83	32	14	24	28	1.94
41219008--41219080	29	2.5	28	82	10	85	28	13	30	27	1.94
41219042--41219539	174	2.9	174	96	0	924	29	14	24	31	1.94
41221030--41221083	28	1.9	28	81	7	65	46	5	1	46	1.37
41229699--41229848	27	5.4	28	92	1	223	33	28	12	26	1.92
41229699--41229848	55	2.7	56	90	3	223	33	28	12	26	1.92
41238707--41238817	42	2.6	43	81	5	127	48	19	17	14	1.81
41243213--41243247	18	2.0	18	88	5	54	20	25	0	54	1.45
41247378--41247442	25	2.6	26	85	7	98	27	24	18	29	1.98
41256098--41256188	25	3.6	25	76	8	76	34	17	20	27	1.95
41256144--41256207	27	2.4	27	83	0	83	40	21	15	21	1.91
41258464--41258521	26	2.2	26	93	0	98	44	3	1	50	1.29
41260187--41262095	967	2.0	953	85	3	2564	27	19	14	37	1.92
41263232--41263499	27	9.9	27	81	1	295	44	21	15	19	1.87
41264917--41264959	22	2.0	22	90	0	68	41	30	9	18	1.82
41285713--41285772	28	2.1	28	90	6	95	50	8	3	38	1.49
41288150--41288201	26	2.0	26	100	0	104	46	15	11	26	1.80
41288356--41288396	21	2.0	21	90	9	66	24	9	12	53	1.68
41288723--41288760	20	1.9	20	94	0	67	44	0	0	55	0.99
41288776--41288835	20	3.2	19	81	9	70	36	1	5	56	1.31
41292917--41292965	15	3.2	16	72	18	50	67	2	2	28	1.13
41294658--41294692	16	2.2	16	90	10	54	82	5	0	11	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41294669--41294705	10	3.5	11	85	10	51	81	8	0	10	0.89
41294663--41294705	21	2.0	21	86	8	61	79	9	0	11	0.95
41294771--41295046	68	4.1	67	85	3	358	23	19	18	38	1.93
41301776--41301832	25	2.3	25	100	0	114	14	28	33	24	1.94
41310300--41310845	275	2.0	275	94	1	961	24	17	24	33	1.96
41311428--41311458	7	4.4	7	100	0	62	38	0	16	45	1.47
41322058--41322167	50	2.2	51	88	6	179	43	6	23	26	1.77
41324615--41325056	51	8.7	50	78	4	372	29	16	25	29	1.96
41324615--41325060	102	4.4	102	86	3	580	29	16	25	29	1.96
41331668--41331808	39	3.6	39	92	0	219	31	4	19	43	1.72
41331714--41331786	23	3.5	23	66	31	65	28	5	20	45	1.73
41332174--41332198	9	2.8	9	100	0	50	24	8	20	48	1.76
41340635--41340671	9	4.1	9	92	0	65	29	10	13	45	1.77
41340737--41340780	20	2.1	22	83	8	56	31	11	9	47	1.71
41340869--41340986	23	5.1	23	81	4	148	22	21	23	32	1.98
41340869--41340983	46	2.5	46	88	0	176	22	20	24	32	1.98
41349202--41349248	24	1.9	24	86	4	67	36	0	38	25	1.56
41349915--41350005	27	3.3	27	81	6	103	39	23	15	21	1.91
41350368--41350467	28	3.6	28	81	0	128	24	17	23	36	1.95
41356407--41356441	3	11.7	3	93	0	61	71	28	0	0	0.86
41358515--41358561	22	2.1	22	84	0	58	46	17	17	19	1.84
41358553--41358755	32	6.4	32	82	2	230	37	20	22	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41358553--41358755	96	2.1	96	89	0	309	37	20	22	20	1.94
41358553--41358758	64	3.2	64	84	2	254	37	20	22	19	1.94
41358746--41358798	26	2.0	26	88	0	79	33	30	20	15	1.93
41358762--41358811	26	1.9	26	87	0	73	38	24	18	20	1.93
41358800--41358865	27	2.5	26	79	13	73	33	16	24	25	1.96
41358927--41358998	24	3.0	23	88	6	99	47	23	8	20	1.77
41359022--41359147	27	4.7	27	90	0	171	22	20	22	34	1.96
41359016--41359186	27	6.3	27	85	4	109	22	18	23	35	1.95
41359014--41359186	81	2.1	80	77	9	179	21	18	23	35	1.95
41359110--41359197	27	3.3	27	85	3	97	20	17	19	43	1.88
41360422--41360448	5	5.4	5	100	0	54	81	18	0	0	0.69
41384525--41384582	23	2.4	25	75	18	68	56	12	5	25	1.56
41388522--41388605	43	2.0	43	90	0	132	19	17	10	52	1.73
41388522--41388590	23	3.1	23	68	19	65	17	18	10	53	1.71
41394547--41394575	8	3.8	8	90	9	51	27	0	48	24	1.51
41397674--41398007	137	2.4	138	88	1	485	44	7	9	39	1.64
41398963--41399030	34	2.0	35	97	2	129	60	29	1	8	1.36
41399889--41399945	25	2.3	26	81	9	73	42	19	17	21	1.90
41402766--41402831	27	2.4	27	85	9	82	37	18	22	21	1.94
41402872--41402933	24	2.6	24	81	0	70	27	8	17	46	1.76
41403788--41403857	16	4.4	16	92	0	95	32	0	34	32	1.58
41404089--41404125	18	2.1	17	90	5	56	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41403978--41404292	157	2.0	157	96	0	585	44	3	5	47	1.41
41404228--41404269	15	2.7	16	82	14	52	52	2	0	45	1.13
41404237--41404278	15	2.9	15	82	10	52	52	0	0	47	1.00
41404274--41404303	15	1.9	16	93	6	53	50	6	0	43	1.28
41404231--41404523	120	2.4	120	94	1	498	51	4	2	41	1.36
41404347--41404398	15	3.6	15	80	12	56	53	1	0	44	1.11
41404470--41404746	91	2.9	93	81	10	287	48	3	3	44	1.35
41406108--41406132	2	12.5	2	100	0	50	0	0	48	52	1.00
41407151--41407213	23	2.7	24	79	16	78	57	20	4	17	1.58
41409908--41410014	50	2.1	50	84	0	142	21	30	21	26	1.98
41410168--41410212	22	2.1	21	83	4	54	51	11	4	33	1.58
41410404--41410461	30	1.9	30	85	0	80	27	25	5	41	1.76
41411941--41411999	27	2.2	27	84	3	75	27	15	32	25	1.95
41412151--41412191	17	2.4	18	84	12	59	36	14	19	29	1.92
41412281--41412386	51	2.1	51	80	7	117	19	16	32	31	1.95
41413070--41413131	29	2.1	29	96	0	115	20	17	6	54	1.65
41413271--41413317	19	2.4	19	82	13	60	42	0	4	53	1.20
41413361--41413405	22	2.0	22	86	8	63	51	4	4	40	1.42
41418673--41418724	16	3.4	16	76	15	56	36	3	3	55	1.36
41418665--41418724	30	2.0	29	84	9	77	38	3	5	53	1.39
41419041--41419081	21	2.0	21	85	0	55	39	2	2	56	1.26
41420309--41420420	40	2.8	40	82	6	113	47	5	6	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420662--41420701	16	2.5	16	95	0	71	37	7	27	27	1.84
41420683--41420773	45	2.0	44	83	10	114	36	4	20	38	1.73
41420883--41421012	55	2.3	56	79	12	133	50	3	2	43	1.33
41421375--41421464	47	1.9	47	95	0	162	47	7	5	38	1.56
41425608--41425668	27	2.3	27	97	0	113	42	8	0	49	1.32
41426075--41426138	18	3.5	18	82	4	92	46	0	12	40	1.42
41426059--41426326	37	7.6	36	75	17	208	46	2	9	41	1.52
41426059--41426154	19	5.2	19	79	5	124	48	0	12	38	1.41
41426231--41426326	19	5.2	19	72	5	97	47	0	12	39	1.41
41425968--41426341	172	2.2	173	96	0	687	44	4	8	42	1.54
41426247--41426310	18	3.5	18	74	4	65	45	0	12	42	1.42
41426826--41426877	27	1.9	27	92	0	86	15	32	21	30	1.94
41426828--41426886	27	2.2	27	84	0	73	15	28	25	30	1.96
41426911--41426980	28	2.5	28	88	6	99	45	0	4	50	1.21
41431736--41432609	229	3.8	227	78	6	835	30	18	22	27	1.98
41431735--41432609	113	7.7	114	78	7	839	30	18	22	27	1.97
41432770--41432811	20	2.1	20	86	0	57	19	4	30	45	1.71
41433302--41433361	14	4.4	13	75	19	50	18	3	35	43	1.67
41433428--41433496	7	9.3	7	77	12	66	20	1	34	43	1.61
41433428--41433496	15	4.7	15	77	13	72	20	1	34	43	1.61
41433961--41434243	148	1.9	148	83	2	372	23	18	22	36	1.95
41434683--41434734	14	3.4	14	76	23	59	30	13	19	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41436234--41436284	25	2.0	25	88	0	75	41	5	1	50	1.37
41436243--41436302	27	2.2	27	85	5	77	45	1	0	53	1.10
41436249--41436315	19	3.4	19	78	12	64	43	1	1	53	1.19
41436371--41436442	21	3.3	21	74	16	65	48	15	1	34	1.54
41436394--41436556	23	6.9	23	67	15	82	48	13	1	36	1.53
41436332--41436634	96	3.2	95	91	3	491	48	15	1	34	1.54
41436391--41436462	36	2.0	36	83	5	92	47	12	2	37	1.56
41436551--41436670	9	13.7	9	67	23	53	44	19	0	35	1.57
41436563--41436624	11	5.9	11	73	19	53	43	17	1	37	1.59
41436565--41436668	43	2.3	45	80	11	117	43	17	0	38	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230