genome.fa.s19.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  163  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48334671--48334707	18	2.1	18	94	0	65	21	18	0	59	1.38
48334790--48334822	10	3.3	10	87	12	50	21	21	0	57	1.41
48335482--48335540	26	2.3	25	91	2	91	30	16	10	42	1.82
48335482--48335542	25	2.4	26	91	2	97	31	16	11	40	1.84
48347086--48347134	22	2.2	22	85	0	62	26	20	16	36	1.93
48350095--48350329	119	2.0	119	95	0	425	29	11	20	38	1.87
48352477--48352660	59	3.1	58	80	5	208	40	12	17	29	1.87
48352508--48352680	59	2.9	58	83	1	202	41	12	17	28	1.86
48357586--48357640	20	2.8	19	75	8	56	41	1	1	54	1.21
48358342--48358404	30	2.1	30	90	0	99	23	3	14	58	1.50
48372601--48372651	22	2.3	22	83	12	61	29	15	9	45	1.79
48373042--48373423	190	2.0	190	92	0	629	28	9	24	36	1.88
48373975--48374018	15	2.8	16	86	6	54	20	2	27	50	1.60
48383527--48383569	22	2.0	22	85	0	59	9	16	27	46	1.77
48383554--48383603	20	2.5	20	90	9	84	12	22	24	42	1.87
48383600--48383666	25	2.7	25	78	0	71	20	13	20	44	1.85
48401947--48401989	3	14.3	3	100	0	86	32	0	0	67	0.91
48402389--48402436	21	2.5	20	75	24	50	22	0	12	64	1.27
48402404--48402449	22	2.1	22	84	8	58	19	0	8	71	1.11
48408217--48408264	22	2.2	22	77	3	53	35	4	8	52	1.51
48410014--48410055	18	2.4	18	92	4	68	40	19	19	21	1.92
48412678--48412964	50	5.8	50	82	6	334	27	19	32	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48412682--48412960	97	2.8	98	82	6	312	27	19	32	20	1.97
48412678--48413006	147	2.2	148	90	1	500	27	20	31	20	1.98
48416825--48416856	6	5.3	6	100	0	64	18	15	0	65	1.27
48418243--48418267	8	3.1	8	100	0	50	36	0	12	52	1.39
48419731--48419776	22	2.0	23	83	4	58	50	4	13	32	1.61
48419938--48419979	20	2.1	20	86	0	57	26	0	30	42	1.55
48424935--48424959	13	1.9	13	100	0	50	12	8	8	72	1.29
48429107--48429158	24	2.2	24	89	0	77	55	9	1	32	1.43
48429308--48429345	18	2.1	18	90	0	58	21	5	34	39	1.76
48434367--48434391	8	3.1	8	100	0	50	24	0	0	76	0.80
48434797--48434829	11	3.1	11	82	8	50	60	0	30	9	1.27
48436989--48437173	101	1.8	102	91	3	311	25	18	26	29	1.98
48436986--48437171	51	3.7	49	80	7	205	25	18	26	29	1.98
48440610--48440649	19	2.2	19	90	4	64	37	7	15	40	1.75
48443491--48443563	30	2.4	30	82	8	103	24	24	21	28	1.99
48449654--48449701	24	2.0	24	83	0	60	47	2	2	47	1.25
48452618--48452785	89	1.9	88	87	1	246	41	13	13	31	1.83
48465631--48465904	145	1.9	145	96	0	503	31	24	14	29	1.95
48465882--48465960	29	2.7	30	82	13	110	30	30	13	25	1.94
48473839--48473906	29	2.3	29	85	5	93	27	30	13	27	1.94
48473728--48474053	172	1.9	174	95	1	593	30	24	14	29	1.95
48474006--48474084	29	2.7	30	82	13	110	30	30	13	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476482--48476519	20	1.9	20	84	10	51	34	5	2	57	1.35
48491042--48491118	27	2.9	27	88	0	109	29	25	15	28	1.96
48501038--48501080	19	2.2	20	83	4	52	69	2	0	27	1.00
48504945--48504998	27	2.0	27	92	0	90	22	33	22	22	1.97
48509121--48509159	20	2.0	20	100	0	78	48	10	20	20	1.78
48523721--48523779	30	2.0	30	82	0	73	27	23	11	37	1.90
48523767--48523965	30	6.7	30	79	8	119	24	25	14	35	1.94
48523767--48523988	60	3.7	58	74	14	186	24	26	14	34	1.94
48523795--48523988	30	6.5	30	77	6	153	25	27	13	33	1.94
48523947--48524013	29	2.3	29	84	7	82	23	31	10	34	1.89
48531421--48531615	60	3.3	59	71	9	189	25	24	14	35	1.93
48531503--48531615	30	3.8	30	74	16	92	24	23	14	37	1.92
48534357--48534451	48	2.0	48	93	0	163	37	13	10	37	1.80
48538074--48538130	23	2.5	23	83	8	64	70	1	5	22	1.17
48538260--48538306	17	2.6	18	75	18	53	72	0	2	25	0.96
48551913--48551953	21	2.0	21	90	0	64	31	9	36	21	1.86
48554288--48554390	48	2.1	48	87	7	147	33	13	19	33	1.91
48559507--48559714	106	2.0	106	94	0	362	26	24	18	31	1.97
48565699--48565824	66	1.9	66	93	0	216	26	35	16	20	1.94
48565946--48566095	57	2.5	59	85	10	198	24	25	21	29	1.99
48566208--48566249	21	2.0	21	82	17	52	52	14	0	33	1.42
48581837--48581876	20	2.0	21	85	5	55	57	17	0	25	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48582364--48582407	22	2.0	21	86	4	61	65	9	11	13	1.46
48586718--48586769	21	2.4	22	84	12	72	73	7	17	1	1.16
48592528--48592567	20	2.1	19	90	4	62	75	5	17	2	1.10
48593221--48593318	51	1.9	51	95	0	178	36	26	14	22	1.92
48594133--48594178	20	2.2	20	84	7	56	67	8	10	13	1.42
48597111--48597155	20	2.2	20	84	7	56	75	0	0	24	0.80
48604339--48604404	33	2.0	33	93	0	114	19	24	18	37	1.93
48609113--48609137	5	5.0	5	100	0	50	80	0	0	20	0.72
48610508--48610532	10	2.5	10	100	0	50	72	8	0	20	1.10
48611637--48611768	55	2.4	55	81	7	144	26	34	0	38	1.62
48623046--48623076	3	10.3	3	100	0	62	64	0	0	35	0.94
48626719--48627445	374	2.0	369	92	3	1203	33	13	12	40	1.82
48630945--48631087	56	2.6	54	80	8	128	40	10	4	44	1.60
48630981--48631090	54	2.0	58	83	7	147	42	9	4	43	1.56
48639210--48639287	39	2.0	39	100	0	156	33	12	10	43	1.77
48639584--48639608	12	2.1	12	100	0	50	48	0	0	52	1.00
48641699--48641876	27	6.6	27	84	3	205	29	28	15	26	1.96
48641720--48641875	82	1.9	81	88	3	233	29	28	15	26	1.96
48658947--48658976	16	1.9	15	93	6	51	30	3	13	53	1.56
48663041--48663077	17	2.2	17	90	0	56	10	21	0	67	1.21
48666240--48666290	26	2.0	26	92	0	84	49	5	1	43	1.38
48669154--48669225	20	3.7	20	85	7	85	38	0	6	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48671888--48671934	18	2.7	18	81	15	62	36	4	0	59	1.17
48671901--48671946	18	2.5	19	83	13	53	39	4	0	56	1.19
48678454--48678998	87	6.3	87	91	0	851	29	22	22	25	1.99
48689430--48689479	20	2.5	20	87	3	75	12	2	24	62	1.40
48690113--48690181	19	3.2	22	71	16	65	7	18	0	73	1.05
48690116--48690185	20	3.4	19	77	12	68	5	20	0	74	1.02
48691440--48691478	19	2.0	20	85	5	53	43	5	7	43	1.55
48692476--48692611	41	3.4	41	82	5	147	26	17	22	33	1.96
48693961--48694031	36	2.0	36	100	0	142	30	11	16	40	1.84
48694832--48694911	20	3.9	20	83	9	90	42	21	25	11	1.85
48708488--48709476	492	2.0	490	94	1	1714	39	21	12	27	1.88
48710583--48711571	492	2.0	490	93	1	1703	39	21	12	27	1.88
48712679--48713667	491	2.0	491	93	1	1705	39	21	12	27	1.88
48717927--48717969	18	2.3	19	80	8	52	32	4	0	62	1.15
48718201--48719294	547	2.0	547	92	0	1823	35	23	14	25	1.93
48720088--48720117	15	2.0	15	93	0	51	20	10	0	70	1.16
48735180--48735204	13	1.9	13	100	0	50	44	16	0	40	1.47
48737049--48737312	40	6.7	40	87	5	342	25	21	26	26	1.99
48737101--48737345	120	2.1	118	84	4	314	26	20	26	26	1.99
48745077--48745340	40	6.7	40	88	5	351	25	21	27	25	1.99
48745077--48745373	119	2.5	118	81	9	338	26	20	27	25	1.99
48748740--48749283	110	5.0	110	89	0	766	31	21	14	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48750947--48751002	21	2.7	21	78	10	62	78	0	16	5	0.92
48751351--48751384	11	2.8	12	91	8	52	8	2	2	85	0.80
48754435--48754474	22	1.9	20	85	10	53	52	0	7	40	1.30
48756220--48756323	41	2.5	41	96	0	190	20	29	29	20	1.97
48756841--48756870	16	1.9	16	93	6	53	50	0	0	50	1.00
48757832--48757863	12	2.7	12	95	0	55	71	0	9	18	1.12
48758517--48758569	3	17.7	3	77	14	56	62	1	1	33	1.17
48758517--48758547	16	1.9	16	93	0	53	64	0	3	32	1.09
48759969--48760084	46	2.6	45	84	8	132	25	22	23	28	1.99
48760509--48760731	43	5.2	44	61	14	131	24	21	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230