genome.fa.s19.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  183  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54900665--54900709	8	6.0	8	82	10	51	64	2	6	26	1.30
54900660--54900703	21	2.2	20	87	4	61	65	2	4	27	1.23
54902273--54902542	94	2.9	94	78	5	267	29	16	18	35	1.93
54902383--54903223	44	18.6	44	71	12	411	29	19	17	33	1.94
54902474--54902808	133	2.5	131	80	6	363	31	19	16	33	1.93
54902925--54903224	90	3.4	89	83	3	345	28	19	17	35	1.94
54910017--54910107	40	2.3	40	78	3	103	31	18	24	25	1.97
54910190--54910294	14	7.4	14	73	2	66	22	0	30	45	1.59
54910844--54910921	41	2.0	39	90	7	122	53	5	3	37	1.41
54910991--54911256	126	2.1	123	81	4	302	33	15	19	31	1.93
54911359--54911399	20	2.0	20	95	0	73	24	43	0	31	1.54
54911635--54911748	40	2.9	38	77	10	113	38	20	21	19	1.93
54911789--54911983	104	1.9	105	82	3	250	21	18	27	32	1.97
54911911--54912066	41	3.8	41	81	3	136	19	18	30	31	1.96
54911973--54912064	42	2.2	41	82	1	112	20	22	28	28	1.99
54912295--54912333	7	5.6	7	81	0	51	20	0	35	43	1.52
54912357--54912405	14	3.4	15	83	11	66	24	2	24	48	1.61
54912401--54912567	7	23.7	7	77	8	97	22	0	34	41	1.59
54912393--54912574	28	6.4	28	73	8	118	21	1	33	43	1.60
54912295--54912588	35	8.3	35	70	9	150	23	1	31	43	1.62
54915671--54915787	57	2.1	57	98	0	225	19	11	14	53	1.71
54917094--54917237	71	2.0	72	91	2	236	29	9	18	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54917244--54917387	43	3.4	42	82	1	171	20	19	29	30	1.97
54917450--54917493	22	2.0	22	90	0	70	43	25	20	11	1.85
54918127--54918229	52	2.0	52	82	3	127	17	12	20	49	1.79
54919276--54919338	18	3.3	18	88	6	72	47	17	0	34	1.48
54919303--54919491	56	3.3	56	84	10	254	43	20	0	35	1.56
54919286--54919479	61	3.3	60	85	9	256	43	19	0	36	1.55
54919294--54919498	9	22.6	9	74	12	152	43	20	0	35	1.58
54925310--54925433	43	2.9	43	91	0	194	33	19	22	24	1.97
54925310--54925456	43	3.4	43	87	2	181	33	21	21	24	1.97
54925774--54925828	23	2.5	22	77	22	62	67	1	3	27	1.17
54925864--54925914	18	2.7	19	72	22	54	70	1	7	19	1.21
54940116--54940163	17	2.9	17	90	3	71	27	0	18	54	1.44
54941372--54941556	46	4.0	46	92	0	298	36	9	25	29	1.87
54945507--54945584	41	1.9	40	82	10	95	25	25	20	28	1.99
54946053--54946094	21	2.0	21	100	0	84	47	14	9	28	1.75
54953561--54953602	21	2.0	21	100	0	84	47	14	9	28	1.75
54961368--54961409	15	2.5	17	82	14	52	57	4	2	35	1.33
54966399--54966444	18	2.8	18	84	15	64	0	30	41	28	1.56
54968515--54968555	22	1.9	21	85	5	55	58	0	2	39	1.11
54971253--54971290	19	2.0	19	94	0	67	31	13	26	28	1.93
54975920--54975987	19	3.6	19	87	0	91	33	32	4	29	1.77
54975911--54975988	19	4.1	19	84	0	84	35	33	5	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54977256--54977371	37	3.1	38	82	2	153	37	29	18	14	1.91
54978971--54979039	18	3.8	19	74	16	65	72	0	24	2	0.98
54982089--54982131	19	2.3	19	84	8	52	65	0	2	32	1.06
54982104--54982137	17	1.9	18	88	5	52	70	0	2	26	1.01
54987158--54987195	20	1.9	20	88	0	58	42	7	10	39	1.69
54990642--54990945	152	2.0	152	100	0	608	26	23	13	36	1.92
54996722--54996767	22	2.3	19	82	14	56	21	6	0	71	1.08
54996723--54996769	20	2.2	22	88	7	71	21	6	0	72	1.07
54996729--54996774	6	7.2	6	83	13	56	21	2	0	76	0.90
54997714--54997760	22	2.1	22	100	0	94	44	8	4	42	1.54
54997959--54997992	17	2.1	17	94	5	61	14	0	17	67	1.23
55004815--55005040	25	8.8	25	72	12	106	34	21	26	18	1.96
55004851--55005035	103	1.8	102	88	3	282	34	20	26	18	1.96
55016321--55016374	25	2.2	25	83	6	65	33	22	29	14	1.94
55016407--55016461	25	2.2	25	93	0	92	34	20	29	16	1.94
55024934--55024986	23	2.3	23	100	0	106	32	3	39	24	1.73
55033324--55033404	25	3.2	25	79	6	92	25	20	27	25	1.99
55033324--55033430	50	2.2	49	84	1	142	29	20	24	25	1.99
55036588--55036621	8	4.2	8	85	14	52	35	0	8	55	1.31
55048901--55049005	50	2.1	50	91	3	169	47	10	9	32	1.70
55051004--55051046	18	2.6	16	85	7	59	62	0	2	34	1.08
55051004--55051046	17	2.6	15	82	17	50	62	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55052618--55052648	9	3.4	9	90	0	53	25	12	22	38	1.90
55052703--55052739	9	4.1	9	92	0	65	45	13	10	29	1.77
55069709--55069764	25	2.2	25	90	6	87	42	10	26	19	1.84
55072536--55072610	11	7.4	11	73	22	65	54	0	4	41	1.19
55072536--55072611	10	7.5	10	76	19	61	53	0	3	42	1.19
55072556--55072586	16	1.9	16	93	0	53	54	0	3	41	1.16
55072545--55072598	27	2.0	27	89	10	83	53	0	3	42	1.18
55072542--55072617	39	2.0	38	92	5	127	55	0	2	42	1.14
55072542--55072637	38	2.5	39	86	8	119	56	0	2	41	1.11
55072602--55072655	27	1.9	29	92	7	94	62	0	0	37	0.95
55074922--55074965	23	1.9	23	85	0	61	27	6	11	54	1.61
55078543--55079143	297	2.0	297	87	3	861	35	12	16	35	1.87
55081311--55081360	20	2.5	19	80	6	55	38	2	8	52	1.43
55081311--55081362	19	2.7	19	82	8	52	38	1	7	51	1.42
55101044--55101108	32	2.1	31	94	2	112	58	20	3	18	1.52
55103002--55103035	18	1.9	17	88	5	50	61	2	0	35	1.11
55106313--55106363	21	2.7	19	76	11	52	39	15	11	33	1.84
55106604--55106692	34	2.6	34	77	7	90	26	16	24	31	1.97
55108609--55108646	16	2.4	16	86	4	51	15	2	2	78	0.97
55115054--55115098	24	1.9	23	86	13	65	37	0	2	60	1.09
55115195--55115222	9	3.1	9	100	0	56	57	10	0	32	1.33
55115165--55115365	59	3.1	68	84	13	298	45	8	4	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55115354--55115395	16	2.6	16	92	0	66	42	7	2	47	1.43
55115369--55115424	23	2.5	23	82	2	69	44	1	1	51	1.22
55120900--55120996	23	4.2	23	90	0	158	22	20	26	29	1.99
55120901--55120989	46	1.9	46	100	0	178	22	20	26	30	1.98
55124521--55124571	24	2.2	24	77	22	56	33	0	5	60	1.21
55124708--55124747	20	2.0	20	90	0	62	50	12	10	27	1.72
55125243--55125281	14	2.6	14	88	8	51	38	17	10	33	1.84
55131398--55131450	16	3.3	16	81	0	61	41	7	28	22	1.81
55131477--55131575	39	2.5	39	91	0	171	33	5	27	34	1.79
55131704--55131794	29	3.2	28	69	16	71	51	3	0	45	1.17
55131671--55131799	56	2.3	57	80	9	147	53	3	0	42	1.19
55131658--55131767	19	4.9	23	66	28	67	55	1	0	41	1.16
55132092--55132253	77	2.1	77	97	0	306	42	9	6	40	1.65
55134123--55134184	31	2.0	31	100	0	124	48	22	6	22	1.73
55137521--55137705	85	2.2	85	90	0	289	28	16	16	39	1.90
55142226--55142294	16	4.3	16	90	0	102	36	5	33	24	1.80
55142274--55142363	45	2.0	44	82	6	110	28	5	28	36	1.80
55142526--55142560	18	2.0	17	88	5	52	54	0	0	45	0.99
55142646--55142679	17	2.0	17	100	0	68	58	0	0	41	0.98
55142506--55142979	119	4.0	119	93	0	763	50	4	1	43	1.31
55142605--55142920	41	7.9	41	66	19	139	51	3	0	43	1.26
55142734--55142915	15	11.5	15	65	21	77	53	3	0	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55142764--55142798	17	2.0	18	94	5	63	60	0	0	40	0.97
55142859--55142927	26	3.0	26	70	25	64	53	0	0	46	1.00
55157459--55157504	16	2.7	18	80	10	60	17	0	8	73	1.07
55157436--55157507	6	12.5	6	73	8	51	12	4	6	76	1.13
55157489--55157556	26	2.6	26	75	13	68	20	7	4	67	1.33
55165442--55165664	119	1.9	120	84	6	301	24	27	22	25	2.00
55165421--55165664	40	6.1	40	84	6	291	24	27	22	25	2.00
55170661--55170723	20	2.9	21	75	20	67	23	0	4	71	1.05
55170657--55170716	7	8.2	8	71	25	53	23	0	3	73	0.98
55170657--55170723	14	4.6	14	83	12	91	23	0	4	71	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230