genome.fa.s19.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  202  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60498316--60498359	11	3.8	11	80	11	52	31	0	4	63	1.14
60499611--60499770	35	4.7	34	71	7	128	28	15	27	29	1.96
60499643--60499803	33	4.8	32	73	8	115	29	14	26	29	1.96
60499576--60499806	101	2.3	101	95	0	408	31	15	24	29	1.95
60499806--60499859	24	2.2	25	83	9	76	48	5	22	24	1.72
60503129--60503322	97	2.0	97	96	0	361	27	28	18	25	1.98
60527184--60527276	46	2.0	46	97	0	177	37	17	20	24	1.93
60539637--60539675	15	2.5	15	79	4	51	53	2	2	41	1.28
60539891--60539950	21	2.9	21	87	5	68	56	3	1	38	1.26
60539905--60539978	26	3.0	26	84	11	95	54	4	1	40	1.28
60542591--60542624	12	2.8	12	86	0	50	55	17	17	8	1.66
60542729--60542837	55	2.0	55	100	0	218	47	14	13	23	1.80
60561226--60561264	19	2.0	20	85	5	53	41	2	0	56	1.13
60564829--60564873	22	2.0	22	100	0	90	35	8	0	55	1.31
60564942--60565009	27	2.5	27	95	0	118	27	30	26	14	1.95
60565052--60565181	4	31.0	4	72	17	70	67	0	31	0	0.96
60565043--60565165	26	4.7	27	74	11	98	66	0	32	0	0.97
60565079--60565213	39	3.3	42	77	13	131	68	0	31	0	0.89
60565062--60565227	40	4.3	39	76	17	134	66	0	33	0	0.92
60565125--60565234	23	4.8	23	70	20	79	66	0	33	0	0.92
60565733--60566181	160	2.8	160	71	11	379	49	8	12	29	1.71
60568408--60568463	11	5.0	11	74	20	53	39	10	14	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60568394--60568463	34	2.1	34	97	0	131	38	11	11	38	1.78
60571551--60571597	3	15.7	3	100	0	94	68	31	0	0	0.90
60571664--60571702	20	2.0	21	85	10	55	66	10	0	23	1.22
60571927--60571976	26	2.0	25	92	7	84	48	0	8	44	1.32
60571928--60571996	26	2.6	26	84	9	77	46	1	10	42	1.46
60573288--60573503	113	1.9	112	81	4	256	35	18	22	24	1.95
60573562--60573989	114	3.7	114	77	7	429	30	19	23	26	1.98
60573562--60574103	114	4.7	113	75	10	401	30	18	23	27	1.98
60573559--60573990	229	1.9	228	85	2	607	30	19	23	26	1.98
60573616--60574157	229	2.4	228	81	7	607	30	19	22	28	1.98
60574470--60574503	7	4.7	7	89	7	50	14	0	38	47	1.45
60574873--60574936	24	2.7	24	81	13	62	48	0	1	50	1.10
60575561--60575650	44	2.0	44	89	0	135	24	31	8	35	1.86
60577279--60577340	19	3.4	19	66	20	60	32	3	1	62	1.20
60577281--60577368	35	2.5	35	96	0	158	32	4	2	60	1.30
60577404--60577461	16	3.8	16	75	13	68	48	13	0	37	1.43
60577388--60577465	9	8.7	9	70	16	54	44	14	1	39	1.53
60577722--60577785	12	5.3	12	92	0	110	48	15	0	35	1.46
60577722--60577784	24	2.6	24	100	0	126	47	15	0	36	1.46
60577812--60577873	25	2.5	23	80	14	70	56	19	0	24	1.42
60577839--60577874	16	2.2	16	95	0	63	52	19	0	27	1.46
60583332--60583389	21	2.8	21	89	0	80	31	22	43	3	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60583849--60584081	126	1.8	127	83	6	312	24	24	23	28	1.99
60583849--60584113	42	6.2	42	83	4	268	23	24	23	29	1.99
60585621--60585692	31	2.3	29	84	13	83	47	9	20	22	1.79
60586694--60586733	3	13.3	3	100	0	80	32	35	0	32	1.58
60590209--60590260	27	2.0	26	92	7	88	42	7	0	50	1.31
60590781--60590821	14	2.9	14	92	3	64	56	2	7	34	1.40
60591650--60591678	14	2.1	14	100	0	58	37	6	0	55	1.27
60592087--60592163	27	2.9	27	94	0	127	14	31	28	25	1.95
60592227--60592273	23	2.0	23	95	0	85	57	0	6	36	1.24
60596239--60596274	18	2.1	18	89	5	56	52	16	0	30	1.44
60596458--60596617	42	3.8	41	82	8	180	28	26	15	28	1.96
60602060--60602126	29	2.2	32	84	7	86	50	0	2	46	1.16
60602126--60602174	25	2.0	25	83	0	62	61	2	2	34	1.19
60605883--60606090	42	4.9	43	83	5	226	32	27	15	24	1.95
60611008--60611071	16	3.9	16	75	16	69	59	0	1	39	1.07
60611464--60611491	2	14.0	2	100	0	56	50	0	0	50	1.00
60613786--60613843	22	2.5	24	81	16	68	32	0	0	67	0.91
60613819--60613849	7	4.4	7	100	0	62	38	0	0	61	0.96
60613811--60613849	21	1.9	20	89	5	60	35	0	0	64	0.94
60615318--60615354	12	3.0	12	92	4	56	29	0	0	70	0.88
60616008--60616071	17	3.6	17	74	15	67	28	12	12	46	1.78
60616000--60616070	36	2.0	36	94	0	124	26	12	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60616265--60616359	48	2.0	48	91	0	154	18	16	22	42	1.89
60621347--60621441	48	2.0	48	91	0	154	21	16	21	41	1.91
60622046--60622083	2	19.5	2	94	5	69	47	0	0	52	1.00
60622521--60622646	11	12.2	11	68	25	64	61	0	0	37	1.01
60622514--60622579	31	2.1	31	88	8	98	59	0	0	40	0.98
60622564--60622663	9	10.3	9	68	19	51	65	0	1	34	1.00
60622528--60622695	39	4.3	39	93	2	282	61	0	1	35	1.11
60622528--60622695	79	2.1	79	96	0	309	61	0	1	35	1.11
60633431--60633471	21	2.0	21	90	0	64	29	21	29	19	1.98
60635373--60635419	25	2.0	24	87	8	69	48	4	27	19	1.67
60641136--60641422	124	2.3	124	89	0	448	32	17	19	29	1.95
60644518--60644815	49	6.5	49	77	12	269	45	7	4	42	1.51
60644608--60644675	31	2.2	31	89	2	102	41	7	5	45	1.56
60644512--60644899	129	3.0	128	86	7	513	45	7	3	43	1.50
60644742--60644893	79	1.9	78	94	2	270	42	7	3	46	1.50
60644562--60644949	127	3.0	126	86	7	491	45	7	3	42	1.51
60644820--60644991	49	3.5	49	95	1	310	45	8	3	42	1.52
60644518--60645010	176	2.8	177	96	1	900	45	8	3	42	1.52
60644820--60645000	97	1.9	94	89	6	285	46	8	3	41	1.51
60645399--60645441	18	2.4	18	88	0	59	44	9	27	18	1.80
60647280--60647354	22	3.4	22	94	0	132	48	0	26	25	1.52
60647280--60647355	10	7.0	10	78	15	80	48	0	26	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60649120--60649220	45	2.2	44	80	13	116	57	0	7	33	1.34
60649173--60649274	35	3.2	31	77	13	91	50	0	7	40	1.38
60649182--60649275	33	2.7	34	77	6	100	50	1	8	40	1.40
60649309--60649345	19	1.9	19	88	0	56	62	2	2	32	1.23
60650492--60650516	13	1.9	13	100	0	50	4	0	32	64	1.12
60651131--60651323	44	4.3	44	80	7	203	26	23	20	29	1.99
60651159--60651321	44	3.7	44	82	1	209	26	24	19	28	1.99
60651131--60651326	89	2.2	89	87	0	293	26	23	20	29	1.99
60660608--60660702	39	2.4	40	77	5	95	40	22	21	16	1.92
60660741--60661001	41	6.4	41	77	2	247	15	22	22	39	1.92
60660740--60661001	82	3.2	81	89	2	371	15	22	22	39	1.92
60663456--60663492	10	3.7	10	92	0	65	43	0	13	43	1.44
60664156--60664192	10	3.7	10	92	0	65	43	0	13	43	1.44
60664260--60664311	27	1.9	27	84	0	68	40	0	11	48	1.40
60665496--60665532	11	3.4	11	96	0	65	37	2	5	54	1.38
60665778--60666340	34	18.0	33	68	26	322	48	11	0	39	1.45
60665800--60666334	56	9.2	56	77	17	353	48	11	0	39	1.45
60665846--60665891	22	2.1	22	91	0	74	47	13	0	39	1.42
60665878--60666306	9	46.2	9	69	21	103	48	11	0	39	1.43
60665939--60665984	22	2.1	22	95	0	83	47	10	0	41	1.38
60665986--60666040	22	2.6	21	88	11	85	49	10	0	40	1.38
60665912--60666300	112	3.5	112	83	12	496	48	11	0	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60666051--60666096	22	2.1	22	95	0	83	47	10	0	41	1.38
60666092--60666169	25	3.3	22	70	24	52	44	15	1	38	1.55
60666122--60666154	16	2.1	16	100	0	66	45	24	0	30	1.53
60666198--60666266	22	2.9	22	78	17	75	49	11	0	39	1.39
60666232--60666276	13	3.4	13	77	17	56	51	11	0	37	1.38
60666321--60666538	9	26.2	9	69	17	114	43	16	2	37	1.61
60666326--60666358	16	2.1	16	100	0	66	45	24	0	30	1.53
60666321--60666462	25	5.6	25	71	14	80	42	16	2	38	1.61
60666321--60666462	34	4.2	33	70	15	94	42	16	2	38	1.61
60666414--60666533	16	7.9	16	69	19	96	45	17	1	35	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230