genome.fa.s19.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  20  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5562252--5562398	45	3.2	45	73	11	161	29	24	19	27	1.98
5562224--5562433	94	2.2	94	98	0	402	27	25	18	29	1.98
5562264--5562417	45	3.3	45	73	10	157	27	26	18	27	1.98
5562605--5562629	7	3.6	7	100	0	50	44	16	0	40	1.47
5565258--5565296	20	2.0	20	84	0	51	41	23	17	17	1.91
5569398--5569435	18	2.1	19	90	5	60	21	21	5	52	1.66
5574316--5574345	2	15.0	2	92	0	51	50	46	3	0	1.18
5574465--5574507	21	2.0	21	95	0	77	20	18	20	39	1.93
5575706--5575747	19	2.2	19	83	8	50	61	0	11	26	1.30
5576572--5576602	16	1.9	16	100	0	62	32	19	6	41	1.77
5582156--5582235	20	3.3	24	68	23	60	21	11	0	67	1.21
5582165--5582214	20	2.2	24	86	13	72	24	10	0	66	1.22
5582469--5582510	15	2.8	15	88	0	57	30	4	4	59	1.39
5588614--5588678	15	4.4	14	73	19	53	73	1	1	23	1.00
5588643--5588686	23	2.0	22	90	4	70	75	2	0	22	0.92
5588605--5588686	19	4.6	16	72	19	65	73	1	2	23	1.03
5593630--5593720	28	3.1	28	77	12	94	63	2	5	28	1.28
5593929--5594003	10	7.9	10	69	8	50	36	0	0	64	0.94
5593929--5593963	17	2.1	16	89	5	52	31	0	0	68	0.90
5593958--5594002	20	2.2	21	96	4	83	35	0	0	64	0.94
5593964--5594014	26	1.9	26	84	4	66	39	0	0	60	0.97
5594021--5594181	86	1.9	86	84	3	218	29	10	20	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5597097--5597630	195	2.7	194	78	3	536	32	11	11	44	1.77
5598124--5598173	26	1.9	26	91	0	82	44	12	10	34	1.75
5598648--5598700	26	2.0	26	92	0	88	41	15	9	33	1.79
5598991--5599020	12	2.5	12	100	0	60	66	0	0	33	0.92
5599052--5599084	15	2.1	16	88	5	50	48	0	0	51	1.00
5599079--5599113	18	1.9	18	88	11	54	68	5	5	20	1.31
5602441--5602491	27	1.9	26	96	4	93	41	0	5	52	1.25
5606516--5606549	12	3.0	11	91	4	50	67	8	11	11	1.42
5609297--5609321	11	2.3	11	100	0	50	72	0	8	20	1.10
5610921--5610974	27	2.0	28	85	3	74	24	7	12	55	1.63
5613737--5613765	6	5.0	6	95	4	51	86	0	13	0	0.58
5622816--5622921	37	2.8	38	77	16	105	50	0	13	34	1.47
5623290--5623406	16	6.9	17	72	19	59	57	1	4	36	1.29
5623604--5623645	3	14.0	3	89	0	66	66	0	2	30	1.04
5623761--5623794	6	5.5	6	86	6	50	52	11	2	32	1.53
5624279--5624314	11	3.2	11	88	4	54	50	0	50	0	1.00
5624376--5624412	15	2.3	17	86	9	51	13	0	8	78	0.96
5626812--5626861	25	2.0	25	100	0	100	32	16	8	44	1.76
5631751--5632047	99	3.0	99	78	3	312	28	19	18	34	1.95
5632116--5632148	16	2.1	16	100	0	66	39	6	6	48	1.53
5638339--5638382	10	4.2	10	77	11	52	63	2	2	31	1.19
5640314--5640506	96	2.0	96	100	0	386	32	8	24	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5648285--5649173	313	2.9	310	84	4	1138	41	18	7	32	1.79
5649760--5649883	36	3.4	36	89	0	194	29	21	14	34	1.93
5649756--5649884	18	7.2	18	81	0	159	28	22	14	34	1.94
5661571--5661681	56	2.0	56	80	7	127	45	3	5	45	1.43
5669277--5669318	20	2.1	20	100	0	84	47	4	9	38	1.57
5669312--5669350	18	2.1	19	86	13	55	46	10	10	33	1.72
5669302--5670025	312	2.3	309	87	4	1044	41	18	7	31	1.79
5673015--5673041	13	2.1	13	100	0	54	14	0	7	77	0.97
5673282--5673408	26	5.0	25	82	6	148	31	2	4	61	1.29
5673454--5673551	33	2.6	39	72	21	93	19	1	9	70	1.20
5674158--5674192	16	2.2	16	90	5	54	82	0	17	0	0.66
5675093--5675309	44	4.7	44	66	13	123	28	22	23	25	1.99
5675091--5675546	143	3.2	141	85	6	595	29	19	22	28	1.98
5675603--5675817	44	4.8	44	77	5	191	30	18	21	28	1.97
5675649--5675811	87	1.9	88	81	3	204	30	19	20	30	1.97
5677387--5677455	26	2.6	26	81	2	66	28	5	5	59	1.44
5677464--5677497	17	2.0	17	88	0	50	38	5	0	55	1.24
5677462--5677497	19	2.0	17	89	10	54	38	5	0	55	1.23
5677499--5677562	25	2.7	24	76	11	69	17	1	6	75	1.09
5677517--5677607	25	3.8	25	71	9	73	21	1	7	69	1.20
5680642--5680935	99	3.0	98	76	5	295	29	20	14	35	1.93
5689217--5689248	4	7.8	4	93	6	55	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5690024--5690067	21	2.1	21	86	0	61	31	13	36	18	1.90
5693774--5693808	3	11.7	3	100	0	70	65	0	34	0	0.93
5695725--5695968	121	2.0	121	99	0	481	44	9	9	36	1.69
5699049--5699326	90	3.1	84	74	11	234	56	12	5	24	1.58
5699078--5699327	90	2.8	86	76	7	250	56	14	4	24	1.57
5699671--5699747	27	2.8	28	76	5	77	42	23	3	29	1.72
5699956--5700165	109	2.0	106	82	6	253	32	21	18	27	1.96
5700548--5700595	15	3.3	15	82	5	71	20	2	8	68	1.26
5702229--5702288	24	2.5	24	75	0	66	20	6	3	70	1.25
5703022--5703060	12	2.9	14	88	11	55	25	5	0	69	1.09
5703023--5703085	15	3.9	15	76	17	56	25	4	0	69	1.07
5703022--5703087	25	2.6	27	81	13	70	25	4	0	69	1.07
5710198--5710249	6	8.8	6	89	10	81	84	0	13	1	0.70
5714359--5714913	143	3.9	143	90	0	813	29	20	22	28	1.98
5714803--5714955	44	3.5	44	78	5	164	25	23	24	26	2.00
5714671--5715095	232	1.8	232	83	4	570	30	20	21	27	1.98
5714814--5714991	89	2.0	89	87	2	259	29	23	22	25	1.99
5715955--5715981	2	13.5	2	100	0	54	51	0	0	48	1.00
5716469--5716507	12	2.9	14	88	11	55	25	5	0	69	1.09
5716470--5716508	15	2.6	15	80	12	53	25	5	0	69	1.09
5732163--5732203	21	2.0	21	90	0	64	19	29	21	29	1.98
5735537--5735561	2	12.5	2	100	0	50	0	52	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5752974--5753041	16	4.2	16	94	0	118	27	0	36	35	1.58
5753022--5753131	45	2.6	41	78	9	116	32	5	29	32	1.80
5753257--5753298	15	2.7	16	82	14	52	52	2	0	45	1.13
5753266--5753307	15	2.9	15	82	10	52	52	0	0	47	1.00
5753255--5753523	120	2.2	121	93	3	456	49	4	2	42	1.37
5753373--5753418	16	2.9	16	78	12	51	52	2	0	45	1.13
5753373--5753427	15	3.7	15	79	13	53	52	1	0	45	1.11
5753305--5753492	61	3.1	61	68	14	181	48	6	2	42	1.42
5757298--5757337	19	2.1	19	86	9	55	42	7	0	50	1.30
5766824--5767030	104	2.0	104	100	0	414	37	26	12	23	1.90
5771570--5771666	50	1.9	50	91	0	158	29	19	20	29	1.97
5772186--5772309	30	4.1	30	93	1	203	25	24	6	43	1.78
5772196--5772303	15	7.2	15	67	12	78	25	22	7	44	1.79
5776875--5776998	30	4.1	30	93	1	203	25	24	6	43	1.78
5776885--5776992	15	7.2	15	67	12	78	25	22	7	44	1.79
5780456--5780615	41	3.9	41	68	9	119	35	26	18	19	1.95
5780461--5780637	82	2.2	82	81	5	214	37	25	16	19	1.93
5791210--5791270	32	1.9	32	100	0	122	24	22	19	32	1.97
5791239--5791420	40	4.6	40	93	0	310	28	21	18	31	1.97
5800964--5801011	19	2.6	19	83	9	55	4	27	0	68	1.07
5817360--5817439	41	1.9	42	85	7	110	18	31	26	23	1.98
5818160--5818194	6	5.8	6	89	0	52	51	14	14	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5819875--5819922	16	3.1	15	90	6	69	64	2	2	31	1.16
5819871--5819922	8	6.5	8	82	8	61	65	1	1	30	1.14
5819870--5819926	24	2.4	24	79	5	71	64	1	3	29	1.20
5820033--5820086	23	2.5	22	75	13	60	57	5	5	31	1.45
5820049--5820134	25	3.7	24	79	10	81	55	5	6	31	1.50
5820156--5820287	25	5.6	25	73	12	91	58	2	3	35	1.29
5820158--5820287	22	5.5	23	66	18	63	58	2	3	35	1.29
5820149--5820205	14	3.9	15	73	26	52	61	0	3	35	1.13
5820766--5820970	30	6.8	30	90	0	329	21	3	48	26	1.66
5821717--5821766	14	3.6	14	78	7	57	64	2	12	22	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230