Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  122  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35449874--35449931
27
2.2
26
81
3
62
27
5
1
65
1.23
35450118--35450449
43
7.7
43
86
0
432
24
18
32
24
1.97
35453507--35453545
19
2.1
19
100
0
78
64
5
15
15
1.46
35454070--35454145
39
1.9
39
94
0
134
46
18
6
28
1.74
35454255--35454307
20
2.7
20
73
5
54
66
9
1
22
1.31
35454353--35454427
38
1.9
39
81
7
91
36
5
14
44
1.68
35454672--35454711
18
2.2
18
91
8
64
27
0
7
65
1.20
35466469--35466512
22
2.0
23
90
4
72
47
9
9
34
1.67
35466590--35466631
12
3.5
12
93
0
75
40
16
9
33
1.81
35477072--35477368
150
2.0
150
96
0
549
43
11
12
32
1.77
35481467--35481496
15
2.0
15
100
0
60
20
13
6
60
1.55
35481940--35482037
12
8.1
12
73
10
56
74
7
10
8
1.22
35481956--35482024
6
11.7
6
84
3
59
72
8
7
11
1.28
35481950--35482025
29
2.5
30
80
6
82
73
7
7
10
1.24
35481944--35482032
35
2.4
36
88
7
126
74
7
8
8
1.23
35481934--35482025
41
2.3
41
84
1
114
75
7
8
8
1.21
35481933--35482038
47
2.2
47
83
6
124
74
6
11
7
1.21
35482400--35482429
7
4.4
7
91
8
53
66
0
16
16
1.25
35482400--35482426
13
2.1
13
100
0
54
70
0
14
14
1.17
35483642--35484529
87
10.3
87
90
1
1392
29
22
23
24
1.99
35483642--35484529
173
5.1
173
90
1
1374
29
22
23
24
1.99
35483642--35484529
260
3.4
260
93
0
1496
29
22
23
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35484776--35484934
44
3.6
43
76
5
140
28
19
23
27
1.98
35497171--35497478
40
7.7
40
97
0
553
22
28
20
28
1.98
35505794--35506101
40
7.7
40
97
0
553
22
28
20
28
1.98
35513783--35513832
20
2.5
20
75
15
59
12
20
8
60
1.57
35514036--35514180
50
2.9
50
80
10
170
23
31
22
23
1.99
35514137--35514288
56
2.7
56
90
0
250
26
28
15
28
1.96
35517261--35517300
21
1.9
21
90
10
64
55
7
12
25
1.63
35523763--35523932
50
3.4
50
81
3
200
21
28
23
27
1.99
35527210--35528385
583
2.0
585
96
0
2149
32
21
15
30
1.95
35538218--35538359
26
5.6
25
68
15
85
59
4
7
29
1.43
35538271--35538319
22
2.3
22
85
3
64
63
2
4
30
1.24
35538488--35538555
25
2.7
26
79
9
68
61
1
4
32
1.24
35538514--35538579
21
3.0
22
84
13
82
63
0
1
34
1.04
35538542--35538598
29
2.0
29
86
6
80
68
1
1
28
1.09
35539450--35539536
43
2.0
43
97
0
165
28
22
18
29
1.97
35539677--35540239
89
6.3
89
87
1
729
23
24
24
27
2.00
35539719--35540212
45
11.1
45
65
15
206
23
24
23
27
2.00
35551844--35551913
24
2.9
23
79
10
59
57
5
10
27
1.54
35551840--35551970
26
5.1
26
75
12
108
60
5
6
27
1.44
35552170--35552237
25
2.7
26
81
9
77
61
2
4
30
1.30
35552191--35552259
25
3.1
21
84
12
77
66
1
2
28
1.14
35552196--35552267
21
3.2
21
76
21
67
66
0
2
30
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35555625--35555685
29
2.1
28
82
8
70
26
13
16
44
1.84
35567505--35567564
27
2.2
26
80
13
68
5
30
1
63
1.25
35573932--35573974
22
1.9
22
85
4
59
60
2
4
32
1.30
35576013--35576088
24
3.1
24
84
5
100
15
26
23
34
1.95
35581480--35581606
54
2.4
54
80
6
141
26
25
29
18
1.98
35584893--35584940
25
1.9
25
91
0
78
16
27
18
37
1.92
35584885--35584950
25
2.6
25
77
13
73
22
25
19
31
1.98
35586785--35586822
2
19.0
2
100
0
76
50
50
0
0
1.00
35595020--35595093
37
2.0
37
100
0
148
32
21
13
32
1.92
35597373--35597431
28
2.1
29
87
9
86
50
0
0
49
1.00
35597797--35597840
17
2.5
17
81
3
52
65
0
6
27
1.17
35598253--35598411
87
1.9
83
88
5
237
37
7
14
40
1.74
35598943--35599512
285
2.0
285
99
0
1131
23
32
16
27
1.96
35603968--35604024
30
1.9
30
85
0
78
31
26
17
24
1.97
35605869--35605903
17
2.1
17
88
0
52
74
0
8
17
1.06
35606510--35606552
18
2.5
17
76
3
50
32
0
4
62
1.15
35611322--35611364
21
2.0
21
100
0
86
51
18
9
20
1.74
35614530--35614596
23
2.9
23
95
0
116
29
29
4
35
1.77
35614909--35614938
15
2.0
15
93
0
51
66
0
10
23
1.21
35614921--35614975
22
2.5
21
85
8
65
72
3
5
18
1.18
35614960--35615014
22
2.6
20
76
20
58
67
1
10
20
1.30
35617088--35617131
20
2.2
21
88
8
65
77
2
13
6
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35621286--35621352
23
2.9
23
95
0
116
29
29
4
35
1.77
35621950--35621979
15
2.0
15
93
0
51
30
20
36
13
1.90
35632546--35632579
16
2.1
16
88
5
50
8
0
14
76
1.01
35639516--35639553
20
2.0
20
84
5
51
34
7
0
57
1.28
35653570--35653680
47
2.4
47
80
3
125
37
23
12
26
1.90
35671388--35671456
28
2.5
28
85
0
93
23
26
27
23
2.00
35671806--35672011
27
7.6
27
81
3
218
18
18
19
42
1.90
35671816--35672011
81
2.4
81
85
5
245
18
19
19
42
1.89
35672670--35672700
15
2.1
14
94
5
53
61
0
38
0
0.96
35677933--35677966
18
1.9
18
88
5
52
17
23
11
47
1.81
35679159--35679249
27
3.4
27
85
0
119
18
17
20
42
1.89
35679933--35679967
10
3.5
10
92
0
52
71
0
28
0
0.86
35682263--35682326
32
2.0
32
100
0
128
40
3
21
34
1.69
35683751--35683776
13
2.0
13
100
0
52
61
0
15
23
1.33
35687074--35687140
25
2.7
25
85
0
89
34
17
20
26
1.96
35690061--35690298
50
4.7
50
82
5
239
22
26
21
29
1.99
35690061--35690298
100
2.3
103
81
7
263
22
26
21
29
1.99
35691580--35691656
39
2.0
39
100
0
154
31
16
12
38
1.87
35693005--35693047
13
3.3
13
83
0
59
32
20
6
39
1.80
35706833--35706915
30
2.8
30
90
0
130
27
27
10
33
1.90
35708344--35708404
28
2.1
28
82
14
72
36
3
8
52
1.48
35708704--35708729
6
4.3
6
100
0
52
15
50
0
34
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35710950--35711046
30
3.2
30
75
2
106
28
15
26
28
1.96
35713226--35713256
12
2.6
12
100
0
62
25
16
12
45
1.83
35713304--35713364
5
12.0
5
77
22
65
1
18
1
78
0.91
35713306--35713371
10
6.7
9
75
16
51
1
16
3
78
0.95
35713304--35713353
20
2.4
21
90
3
75
2
18
2
78
0.95
35713304--35713375
25
2.8
26
78
18
78
1
18
2
77
0.96
35713304--35713363
30
2.0
29
87
9
86
1
18
1
78
0.92
35716003--35716099
30
3.2
30
75
2
106
28
15
26
28
1.96
35725093--35725204
33
3.3
33
67
18
86
25
25
16
32
1.97
35725044--35725206
69
2.4
69
88
4
240
25
25
17
31
1.97
35742743--35742776
17
2.1
16
88
5
50
76
14
0
8
1.01
35750762--35750836
6
12.8
6
77
5
66
21
1
2
74
1.01
35750802--35750849
25
1.9
25
83
8
62
29
2
2
66
1.14
35753783--35753905
41
3.0
41
81
1
158
34
16
27
21
1.94
35756482--35756673
51
3.8
51
80
4
183
31
26
15
27
1.96
35766563--35766617
16
3.4
16
78
9
58
43
5
21
29
1.75
35770743--35771154
23
18.0
23
74
10
308
39
23
4
33
1.74
35770743--35771154
46
9.0
46
77
7
344
39
23
4
33
1.74
35770743--35771151
114
3.6
114
77
10
361
39
22
4
33
1.74
35770732--35771154
160
2.6
158
82
6
494
39
23
4
32
1.75
35775689--35775728
21
1.9
21
94
0
71
65
7
12
15
1.47
35778920--35778962
18
2.4
18
92
0
68
46
4
0
48
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35782640--35782674
12
2.7
13
91
8
54
42
0
2
54
1.15
35782635--35782680
19
2.6
18
75
18
51
45
0
6
47
1.28
35794141--35794195
29
1.9
28
85
10
76
18
50
1
29
1.57
35794719--35794756
19
2.0
19
89
0
58
36
10
21
31
1.87
35801380--35801410
4
7.8
4
100
0
62
48
0
0
51
1.00
35802163--35803008
279
2.9
284
87
7
1196
35
18
6
39
1.78
35805256--35805442
51
3.7
51
75
5
155
24
17
26
32
1.97
35808289--35808352
29
2.2
29
94
2
110
42
18
18
20
1.90
35811004--35811042
20
2.0
20
89
0
60
33
2
35
28
1.71
35812586--35813098
50
9.8
50
75
11
397
27
22
28
21
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230