genome.fa.s19.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  188  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56581336--56581670	51	6.7	49	78	7	332	23	18	26	30	1.98
56581332--56581670	101	3.4	101	92	0	570	23	18	26	30	1.98
56581336--56581664	50	6.5	51	78	5	346	24	18	26	30	1.98
56581339--56581724	51	7.7	49	76	6	272	24	18	26	30	1.98
56581788--56581920	33	3.7	34	74	17	126	21	21	26	30	1.99
56581743--56581919	75	2.3	75	87	6	250	22	19	25	31	1.98
56582690--56582788	49	2.0	49	86	0	135	26	14	28	31	1.95
56585524--56585554	15	2.1	15	100	0	62	45	6	12	35	1.68
56589215--56589384	86	2.0	85	83	4	218	38	16	8	36	1.79
56589558--56589644	10	8.8	10	70	9	54	62	1	1	35	1.11
56589549--56589622	29	2.6	29	86	0	112	60	0	2	36	1.11
56589550--56589651	10	10.3	10	70	12	50	62	0	1	34	1.13
56589667--56589693	13	2.1	13	100	0	54	37	25	0	37	1.57
56589933--56589969	19	1.9	19	94	0	65	32	0	0	67	0.91
56594288--56594335	16	3.1	15	79	8	60	31	2	0	66	1.03
56594275--56594336	26	2.2	27	80	16	72	37	1	0	61	1.06
56594567--56594804	84	2.8	84	88	2	345	31	11	11	46	1.75
56601556--56601732	27	6.6	27	77	5	142	29	28	15	25	1.96
56601556--56601732	55	3.3	54	80	4	178	29	28	15	25	1.96
56609545--56609722	27	6.6	27	81	3	160	28	28	16	26	1.97
56609566--56609721	82	1.9	81	84	3	206	28	28	16	26	1.97
56609545--56609721	54	3.3	54	81	6	196	28	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56612773--56612934	43	3.8	42	77	8	139	32	27	16	24	1.96
56617664--56617688	10	2.5	10	100	0	50	12	20	0	68	1.21
56617971--56618000	3	10.0	3	100	0	60	0	33	0	66	0.92
56639423--56639764	27	12.7	27	80	3	332	41	21	17	20	1.91
56639423--56639764	80	4.2	80	82	6	397	41	21	17	20	1.91
56642926--56643799	50	17.5	50	74	2	696	23	20	22	33	1.97
56642891--56643799	100	9.1	100	91	0	1354	23	20	22	33	1.97
56646022--56646049	9	3.1	9	100	0	56	0	10	0	89	0.49
56646026--56646061	12	2.8	13	87	8	56	0	16	0	83	0.65
56646066--56646100	15	2.4	15	90	4	54	14	0	5	80	0.89
56652348--56652441	27	3.5	27	83	4	118	47	19	14	18	1.82
56652618--56652672	26	2.1	26	93	0	92	23	21	20	34	1.97
56658813--56658842	6	4.8	6	92	8	51	0	20	0	80	0.72
56659765--56660123	27	13.3	27	86	2	429	43	20	16	19	1.88
56663545--56663588	22	1.9	23	81	9	54	43	0	9	47	1.35
56668109--56668153	20	2.1	21	88	12	65	37	2	0	60	1.09
56668139--56668167	14	2.1	14	100	0	58	34	0	0	65	0.93
56668144--56668185	22	1.9	22	85	9	59	40	0	0	59	0.97
56668375--56668436	13	4.5	13	77	16	63	40	0	0	59	0.97
56668387--56668450	29	2.2	30	83	13	80	39	1	1	57	1.17
56674442--56674493	20	2.6	19	75	6	50	42	5	0	51	1.25
56674534--56674614	41	2.0	40	85	7	110	62	4	0	32	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56674655--56674728	21	3.4	21	75	10	76	56	4	0	39	1.18
56674723--56674768	12	3.8	12	80	11	58	73	6	0	19	1.04
56691203--56691302	10	9.9	10	74	18	75	58	0	3	39	1.14
56691187--56691319	40	3.3	40	85	7	180	63	0	3	33	1.10
56691205--56691280	9	8.0	9	78	12	73	61	0	1	36	1.04
56695829--56695881	21	2.5	22	84	9	65	56	1	1	39	1.21
56718676--56718798	42	2.9	42	77	9	124	43	17	20	18	1.89
56720895--56720927	16	2.1	15	94	5	57	60	0	0	39	0.97
56721111--56721153	17	2.5	17	84	3	59	30	0	0	69	0.88
56723857--56723929	26	2.8	27	76	14	71	35	20	20	23	1.96
56731636--56731710	26	2.9	26	80	2	89	42	22	14	20	1.88
56744508--56744760	9	29.9	9	70	15	157	32	2	19	44	1.65
56744555--56744650	16	5.9	16	77	9	88	30	2	20	46	1.62
56744513--56744704	25	8.0	25	72	12	136	33	1	18	45	1.59
56744521--56744650	66	2.0	66	90	0	206	31	1	20	46	1.60
56744555--56744752	41	5.0	41	69	20	64	31	3	19	45	1.65
56744580--56744775	102	1.9	100	90	6	315	33	3	18	45	1.65
56744744--56744786	20	2.2	20	86	0	59	51	0	9	39	1.34
56744758--56744803	20	2.4	19	85	3	56	50	0	2	47	1.13
56744819--56744863	23	2.0	22	86	4	63	46	0	6	46	1.29
56744812--56744872	30	2.0	30	84	6	79	47	0	6	45	1.28
56746195--56746242	22	2.2	22	96	0	87	45	14	16	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56746938--56747186	105	2.4	102	83	8	295	26	12	13	46	1.79
56747083--56747119	18	2.0	20	89	10	60	27	0	0	72	0.84
56747083--56747119	19	2.0	18	89	5	56	27	0	0	72	0.84
56747612--56747654	22	2.0	22	90	0	68	37	41	2	18	1.63
56747619--56747660	22	1.9	22	90	0	66	33	47	2	16	1.60
56747635--56747663	15	1.9	15	100	0	58	34	51	0	13	1.42
56747616--56747664	22	2.3	21	79	6	62	36	44	2	16	1.59
56747683--56747724	14	2.9	14	86	6	57	33	40	2	23	1.68
56747993--56748019	14	1.9	14	100	0	54	37	37	0	25	1.57
56747496--56748105	310	2.0	302	86	7	854	41	28	2	27	1.70
56748110--56748597	114	4.3	114	78	7	535	28	25	20	25	1.99
56748786--56748841	26	2.1	27	84	15	73	50	0	39	10	1.37
56749018--56749355	113	3.0	114	77	11	341	33	23	15	27	1.95
56749018--56749470	115	4.0	113	78	9	368	33	22	15	27	1.95
56749935--56750190	7	35.9	7	69	14	94	43	33	1	21	1.64
56749935--56750195	14	17.8	14	69	15	109	43	32	1	21	1.64
56750019--56750178	65	2.5	65	91	3	252	43	31	2	22	1.67
56753279--56753327	20	2.5	19	81	15	55	4	16	2	77	1.01
56756445--56756492	22	2.4	21	83	16	59	41	8	6	43	1.60
56764026--56764104	37	2.1	37	90	0	122	25	31	18	24	1.98
56764223--56764865	47	13.4	47	91	4	955	29	28	8	33	1.87
56764223--56764865	145	4.5	141	90	5	982	29	28	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56768616--56768652	9	4.1	9	85	0	56	29	8	13	48	1.71
56774341--56774407	30	2.2	30	86	0	89	26	19	16	37	1.93
56775258--56775325	30	2.3	30	86	0	91	36	14	23	25	1.93
56779892--56780056	76	2.2	76	91	0	267	26	20	23	29	1.98
56780315--56780356	15	2.6	16	82	17	52	38	4	16	40	1.70
56782588--56782617	9	3.3	9	95	0	51	53	0	16	30	1.44
56788313--56788366	27	2.0	27	92	0	90	48	7	0	44	1.31
56789072--56789137	34	1.9	34	87	6	98	45	15	7	31	1.74
56791938--56792093	43	3.7	43	76	10	149	30	14	27	26	1.95
56796952--56796986	14	2.5	14	100	0	70	22	28	0	48	1.51
56797112--56797147	12	2.9	12	91	4	54	16	27	0	55	1.42
56797112--56797147	18	1.9	19	88	5	56	16	27	0	55	1.42
56808710--56809084	188	2.0	187	90	0	597	33	16	20	30	1.94
56811962--56812008	18	2.6	18	79	0	58	44	4	31	19	1.70
56812459--56812495	17	2.2	17	90	0	56	21	18	5	54	1.64
56816280--56816378	47	2.1	48	86	1	137	19	21	21	38	1.94
56817213--56817386	94	1.9	94	86	2	251	33	20	11	35	1.88
56817297--56817566	130	2.1	129	83	2	344	32	19	12	34	1.90
56818490--56818536	21	2.2	20	79	17	51	23	17	4	55	1.59
56819514--56819577	20	3.2	20	69	8	58	42	15	17	25	1.88
56839106--56839159	22	2.4	23	84	12	76	25	29	1	42	1.66
56839104--56839159	11	4.9	12	73	18	57	25	30	1	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56841023--56841057	18	1.9	18	88	0	52	20	28	8	42	1.81
56841629--56842077	21	21.0	21	82	6	467	46	27	1	24	1.60
56841629--56842077	22	21.0	21	78	10	355	46	27	1	24	1.60
56841629--56842077	43	10.5	42	84	4	535	46	27	1	24	1.60
56844040--56844074	18	1.9	18	94	0	61	57	20	0	22	1.41
56856525--56856554	15	1.9	16	93	6	53	33	0	23	43	1.54
56856553--56856599	23	2.0	23	91	0	76	36	12	12	38	1.82
56856863--56856953	25	3.6	24	80	5	76	24	19	24	31	1.98
56857169--56857213	22	2.0	24	91	8	76	48	4	13	33	1.62
56871629--56871891	39	6.7	40	80	11	278	26	22	26	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230