genome.fa.s19.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  154  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45448123--45448147	12	2.1	12	100	0	50	16	24	36	24	1.94
45466099--45466128	13	2.3	13	94	0	51	36	26	26	10	1.88
45469133--45469307	27	6.5	26	75	9	113	28	25	14	32	1.94
45469133--45469308	54	3.3	54	79	7	180	27	25	14	32	1.94
45469180--45469311	27	4.9	27	86	3	194	29	25	12	33	1.92
45471700--45471747	24	2.0	24	100	0	96	37	25	16	20	1.93
45474014--45474249	27	8.7	27	81	8	248	32	21	9	36	1.86
45492470--45493027	47	11.7	47	95	1	920	32	8	29	29	1.87
45495511--45495587	22	3.5	22	80	18	81	23	27	2	46	1.65
45495537--45495587	11	4.6	11	83	7	68	21	31	1	45	1.63
45496037--45496062	7	3.7	7	100	0	52	26	0	15	57	1.38
45496712--45496754	18	2.4	18	88	0	59	18	27	9	44	1.80
45498903--45499326	126	3.4	126	92	0	695	26	22	19	32	1.97
45499363--45499598	94	2.4	100	83	7	286	39	16	2	41	1.61
45499452--45499596	51	3.1	46	71	14	125	36	15	2	45	1.58
45499427--45499670	94	2.6	92	78	8	228	41	13	2	41	1.60
45513321--45513367	20	2.3	20	78	10	51	27	0	10	61	1.29
45513460--45513505	21	2.2	21	84	7	58	45	4	4	45	1.43
45513942--45513986	23	2.0	23	86	4	65	33	0	4	62	1.15
45519036--45519479	227	2.0	220	90	5	700	39	19	12	28	1.88
45520018--45520061	13	3.5	13	81	3	54	65	2	6	25	1.28
45523171--45523306	67	2.0	68	88	4	204	41	21	2	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45537048--45537115	25	2.5	27	74	13	68	69	2	1	26	1.12
45542272--45542518	50	4.8	50	79	6	221	25	27	19	27	1.99
45542271--45542508	99	2.3	102	80	6	259	25	27	19	27	1.99
45544496--45544548	25	2.1	25	92	0	88	30	9	26	33	1.88
45544494--45544552	25	2.3	25	85	2	82	30	11	25	32	1.92
45554571--45554756	41	4.6	41	86	6	245	25	23	26	24	2.00
45556199--45556374	45	3.9	45	79	7	205	23	20	13	42	1.87
45556207--45556374	89	1.9	89	86	0	237	23	20	12	43	1.86
45559217--45559245	13	2.2	13	100	0	58	41	17	20	20	1.90
45564814--45564838	7	3.6	7	100	0	50	12	0	0	88	0.53
45574414--45574467	27	2.0	28	82	10	67	44	9	0	46	1.35
45580812--45580853	20	2.1	20	90	0	66	19	42	14	23	1.87
45580816--45580860	20	2.2	20	84	0	54	24	42	11	22	1.86
45582701--45583012	89	3.5	89	87	4	443	57	13	5	23	1.56
45584250--45584424	10	17.3	10	69	12	99	69	0	29	1	0.96
45584234--45584388	27	5.0	29	70	19	68	67	0	30	1	0.99
45584234--45584428	41	4.8	41	84	9	233	67	0	31	1	0.97
45584243--45584427	8	22.9	8	67	25	81	69	0	29	1	0.96
45584234--45584428	82	2.4	82	85	10	258	67	0	31	1	0.97
45584960--45584997	13	2.9	13	85	11	51	63	0	0	36	0.95
45584755--45585225	156	3.0	152	78	13	497	51	6	10	31	1.62
45586875--45586900	12	2.2	12	100	0	52	26	46	26	0	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45589037--45589073	10	3.6	10	88	3	56	0	29	0	70	0.88
45589156--45589220	27	2.4	27	89	5	96	12	35	29	23	1.91
45589357--45589394	12	2.9	14	76	15	53	23	0	15	60	1.35
45589590--45589628	20	2.1	18	85	9	51	33	10	17	38	1.84
45589647--45589691	6	7.5	6	97	0	72	33	11	0	55	1.35
45591092--45591135	18	2.4	19	92	3	72	59	0	2	38	1.10
45591076--45591102	8	3.4	8	100	0	54	66	0	0	33	0.92
45591063--45591144	19	4.6	18	71	10	51	63	0	2	34	1.08
45591472--45591560	32	2.8	32	79	3	108	34	2	0	62	1.07
45591515--45591554	21	2.0	21	95	5	73	35	2	0	62	1.09
45591517--45591562	20	2.3	20	85	7	58	36	2	0	60	1.09
45591516--45591561	21	2.2	20	88	3	65	34	2	0	63	1.07
45593521--45593589	34	2.0	34	97	0	129	28	8	13	49	1.71
45595627--45595694	26	2.4	28	79	18	79	44	0	1	54	1.09
45595694--45595890	61	3.3	61	73	11	224	42	1	4	52	1.29
45595644--45595919	120	2.3	120	97	0	516	42	1	3	52	1.24
45596057--45596154	45	2.2	44	83	5	117	35	27	5	31	1.79
45596139--45596170	16	2.0	16	100	0	64	25	25	6	43	1.77
45602323--45602354	16	2.0	16	100	0	64	25	6	0	68	1.12
45603434--45603541	56	1.9	55	94	5	191	37	9	12	39	1.76
45604318--45605275	477	2.0	477	97	0	1790	30	21	16	31	1.95
45609995--45610235	121	2.0	121	98	0	464	31	17	9	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45616836--45617014	68	2.6	68	87	1	234	25	20	18	35	1.96
45627796--45627826	14	2.2	14	100	0	62	12	19	22	45	1.84
45630546--45630583	20	1.9	20	88	0	58	60	2	2	34	1.24
45631853--45631988	68	2.0	69	82	1	166	39	5	5	49	1.49
45635874--45635983	51	2.2	51	86	0	157	21	17	17	43	1.88
45641366--45641407	20	2.1	20	86	0	57	19	16	14	50	1.79
45646388--45646587	49	4.2	48	76	7	190	28	21	27	23	1.99
45649313--45649356	7	6.3	7	81	0	52	29	0	50	20	1.49
45660153--45660487	22	15.0	22	72	16	205	31	0	12	55	1.41
45660154--45660337	20	8.9	20	73	14	97	31	0	13	55	1.38
45660248--45660503	49	5.4	47	75	14	192	30	0	13	55	1.44
45660318--45660511	27	7.7	27	77	16	202	30	1	12	55	1.45
45660290--45660506	98	2.2	98	95	0	398	31	0	12	55	1.43
45660286--45660564	49	5.7	49	82	6	327	31	0	13	54	1.45
45660707--45660780	38	1.9	38	97	0	139	54	4	2	39	1.34
45660891--45660932	16	2.7	15	85	7	57	38	2	2	57	1.25
45662557--45662581	6	4.2	6	100	0	50	32	36	32	0	1.58
45665913--45665968	22	2.5	22	94	0	94	0	30	3	66	1.09
45666029--45666129	27	3.7	27	95	0	184	22	38	21	16	1.93
45666179--45666217	21	1.9	21	94	5	71	46	5	0	48	1.24
45666327--45673311	807	8.7	807	95	0	12301	36	16	15	31	1.90
45675804--45676115	47	6.6	47	90	2	471	33	8	29	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45675812--45676115	96	3.2	96	89	4	481	32	8	29	28	1.87
45678229--45678303	38	2.0	38	86	5	107	30	18	26	24	1.98
45678357--45678757	40	10.1	40	91	1	617	24	22	28	24	2.00
45682168--45682526	47	7.6	47	91	1	538	32	8	30	29	1.86
45692668--45692695	11	2.5	11	100	0	56	78	0	7	14	0.95
45694475--45694526	24	2.2	24	89	0	77	50	9	3	36	1.54
45706350--45706407	24	2.4	24	80	5	64	50	10	3	36	1.54
45706362--45706413	24	2.2	24	85	0	68	50	7	3	38	1.50
45707090--45707140	23	2.5	20	77	20	52	58	1	3	35	1.28
45710068--45710252	79	2.3	81	84	7	236	24	22	27	25	2.00
45710069--45710252	40	4.6	40	83	9	216	24	22	27	25	2.00
45710069--45710285	79	2.7	78	78	12	228	26	22	26	24	2.00
45717610--45717693	42	2.0	42	86	2	116	25	27	2	45	1.66
45719196--45719240	20	2.3	19	81	11	54	48	4	20	26	1.68
45722963--45723060	27	3.5	28	90	2	135	26	13	28	31	1.94
45722991--45723073	27	3.0	27	87	5	96	30	12	25	32	1.92
45722963--45723074	28	4.0	27	83	6	98	28	12	25	33	1.92
45725196--45725234	18	2.2	19	86	9	55	20	0	10	69	1.17
45734765--45734804	21	1.9	21	85	10	55	15	10	27	47	1.77
45735391--45735440	25	2.0	25	88	0	73	34	24	22	20	1.97
45745213--45745269	2	28.5	2	100	0	114	0	49	0	50	1.00
45746893--45746917	13	1.9	13	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45747380--45747410	10	3.0	10	90	9	53	19	3	0	77	0.90
45747403--45747438	19	1.9	19	94	5	65	5	27	0	66	1.13
45758186--45758218	12	2.8	12	95	0	57	75	0	6	18	1.00
45763764--45763808	18	2.5	18	85	7	56	20	31	2	46	1.62
45769701--45769729	14	2.0	15	93	6	51	44	13	6	34	1.71
45770960--45770998	14	2.5	16	88	12	55	35	2	0	61	1.10
45771397--45771466	10	7.8	10	74	16	57	32	0	0	67	0.91
45771373--45771467	45	2.1	46	82	9	115	33	1	1	64	1.08
45771394--45771481	36	2.4	36	80	10	108	35	2	0	62	1.08
45774520--45774549	15	1.9	16	93	6	53	73	3	10	13	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230