genome.fa.s19.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  139  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40883227--40883253	11	2.5	11	100	0	54	14	7	25	51	1.68
40884504--40884558	22	2.4	23	79	11	69	12	5	10	70	1.31
40888205--40888504	24	12.8	24	69	13	142	54	4	6	35	1.47
40888282--40888487	70	3.0	69	73	7	182	54	5	6	33	1.49
40889261--40889323	19	3.2	20	81	6	83	14	26	4	53	1.60
40889263--40889332	20	3.6	20	82	5	72	12	31	4	51	1.59
40898165--40898210	9	5.1	9	89	0	74	30	8	13	47	1.72
40898264--40898294	9	3.4	9	90	0	53	38	22	12	25	1.90
40911466--40911497	6	5.3	6	100	0	64	0	31	0	68	0.90
40915498--40915532	16	2.1	17	89	5	54	40	5	20	34	1.76
40915914--40915991	25	3.1	25	79	0	84	30	23	20	25	1.98
40916077--40916189	25	4.5	25	75	2	111	30	23	23	23	1.99
40916077--40916189	50	2.3	50	82	3	138	30	23	23	23	1.99
40915918--40916227	155	2.0	155	96	0	566	31	18	23	27	1.97
40919222--40919249	6	4.7	6	100	0	56	46	0	35	17	1.49
40919253--40919437	51	3.7	50	79	6	178	24	17	27	30	1.97
40919253--40919437	101	1.8	102	89	3	293	24	17	27	30	1.97
40919253--40919445	102	1.9	101	88	3	289	24	17	27	30	1.97
40919441--40919539	46	2.2	43	81	12	110	23	18	25	33	1.97
40919663--40919694	16	2.0	16	93	0	55	59	0	15	25	1.36
40927429--40927461	17	1.9	17	93	0	57	48	0	6	45	1.27
40928623--40928748	25	5.0	24	71	11	92	26	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40928628--40928748	50	2.4	51	81	8	133	27	24	22	25	2.00
40931655--40931802	50	3.0	50	77	0	161	22	22	23	31	1.99
40931628--40931814	100	1.9	100	86	0	266	22	20	24	32	1.98
40931804--40931949	44	3.2	44	82	4	159	25	26	23	25	2.00
40931835--40931975	45	3.2	44	76	3	138	24	29	19	26	1.98
40932029--40932213	44	4.2	44	68	13	137	25	21	20	32	1.97
40931958--40932357	132	3.0	131	93	0	665	24	23	20	31	1.98
40958153--40958191	20	2.0	20	100	0	78	12	10	25	51	1.71
40961480--40961691	40	5.3	40	90	2	275	25	22	27	25	2.00
40961428--40961724	80	3.7	80	80	6	212	26	21	27	24	1.99
40973882--40974058	27	6.5	27	80	3	167	25	16	29	28	1.97
40973882--40974037	82	1.9	81	84	3	206	25	16	29	28	1.97
40973878--40974058	82	2.2	81	80	2	202	25	16	28	28	1.97
40980916--40981262	40	8.7	40	97	0	624	22	28	19	28	1.98
40980916--40981262	159	2.2	160	97	0	651	22	28	19	28	1.98
40989526--40989872	40	8.7	40	97	0	633	22	28	20	28	1.98
40994376--40994552	27	6.5	27	80	3	167	25	16	29	28	1.97
40994376--40994531	82	1.9	81	84	3	206	25	16	29	28	1.97
40994372--40994552	82	2.2	81	80	2	202	25	16	28	28	1.97
41000801--41000844	15	2.7	17	83	16	58	50	2	0	47	1.13
41001712--41001764	25	2.1	25	92	0	88	24	24	16	33	1.96
41005795--41005836	16	2.4	18	84	11	52	16	2	9	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41005794--41005837	19	2.3	19	80	7	54	15	2	9	72	1.19
41006419--41006465	21	2.2	22	88	3	69	53	12	6	27	1.63
41009020--41009066	26	2.0	25	84	16	64	53	10	12	23	1.70
41009324--41009382	23	2.5	24	78	15	68	59	11	1	27	1.42
41011484--41011525	20	2.0	21	95	4	77	26	28	14	30	1.95
41011574--41011602	13	2.1	14	93	6	51	27	0	13	58	1.36
41012874--41012908	17	2.1	17	100	0	70	45	5	20	28	1.73
41012966--41013019	19	2.8	18	79	17	56	68	7	5	18	1.33
41020674--41020702	8	3.6	8	100	0	58	24	0	0	75	0.80
41023767--41023813	23	2.1	23	84	7	62	51	12	4	31	1.59
41029138--41029192	16	3.7	15	90	4	85	20	12	5	61	1.50
41029138--41029190	15	3.5	15	97	2	97	18	11	5	64	1.46
41029231--41029264	11	3.1	11	91	0	50	17	0	8	73	1.08
41032519--41032765	50	4.8	50	79	5	212	29	21	26	22	1.99
41035605--41035829	40	5.7	40	85	5	260	25	27	21	24	1.99
41035607--41035829	119	1.9	120	82	6	283	25	27	21	25	2.00
41042873--41043097	40	5.7	40	85	5	278	26	27	21	24	1.99
41042875--41043097	119	1.9	120	82	6	283	26	27	21	25	1.99
41057038--41058418	691	2.0	691	94	0	2420	27	19	18	34	1.95
41066803--41066844	18	2.3	18	80	8	50	40	2	11	45	1.54
41071523--41071564	18	2.3	18	80	8	50	40	4	9	45	1.58
41080374--41080545	79	2.2	79	84	3	220	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41080321--41080543	40	5.6	39	81	8	209	25	21	27	25	1.99
41080401--41080578	79	2.2	80	80	3	191	25	21	28	24	1.99
41096227--41096397	39	4.3	40	86	4	213	25	21	28	25	1.99
41096220--41096395	79	2.2	78	82	5	210	26	21	27	25	1.99
41099316--41099465	27	5.5	27	93	3	237	26	13	28	31	1.94
41099316--41099465	55	2.7	55	94	0	255	26	13	28	31	1.94
41106429--41106580	27	5.6	27	93	3	241	26	13	28	30	1.94
41106429--41106580	55	2.8	55	94	0	259	26	13	28	30	1.94
41111329--41111469	70	2.0	70	92	0	237	29	12	13	45	1.79
41111423--41111501	40	2.0	40	97	0	149	30	10	15	44	1.79
41113318--41113359	18	2.4	17	88	11	59	76	2	16	4	1.07
41115700--41115784	40	2.1	40	91	0	134	30	9	11	48	1.71
41115605--41115745	70	2.0	70	91	0	228	29	12	12	46	1.77
41115867--41115922	11	5.7	9	89	10	67	19	0	21	58	1.39
41115880--41115922	11	4.1	11	94	5	72	18	0	18	62	1.32
41128295--41128333	18	2.2	18	90	9	62	71	2	20	5	1.17
41132271--41132334	33	1.9	34	87	9	96	12	29	6	51	1.64
41133453--41133477	10	2.5	10	100	0	50	32	0	8	60	1.26
41142695--41142798	39	2.7	38	83	4	127	44	15	8	31	1.77
41146775--41146978	92	2.2	91	86	3	275	30	17	19	32	1.95
41148464--41148505	16	2.6	16	92	0	66	28	30	11	28	1.92
41150042--41150133	44	2.1	44	97	0	175	28	10	14	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41151432--41151473	22	1.9	22	95	0	75	57	4	11	26	1.54
41151437--41151484	22	2.2	22	88	7	71	56	4	12	27	1.54
41158115--41158140	10	2.6	10	100	0	52	76	0	7	15	0.99
41159318--41159424	39	2.7	39	82	2	126	66	0	18	14	1.31
41159378--41159453	33	2.3	33	80	13	86	59	5	22	13	1.54
41167837--41167880	12	3.5	13	84	9	56	25	4	6	63	1.38
41173933--41173975	12	3.8	11	82	14	52	9	23	2	65	1.34
41175021--41175054	15	2.5	13	86	13	50	8	8	5	76	1.15
41175037--41175070	11	3.0	11	91	4	50	17	8	2	70	1.25
41176372--41176414	22	2.0	21	86	4	59	55	9	0	34	1.32
41176403--41176449	19	2.5	20	83	16	64	46	12	6	34	1.67
41177012--41177181	91	1.9	92	79	1	198	35	20	13	30	1.91
41179282--41179321	19	2.2	19	86	13	57	10	27	2	60	1.42
41179458--41179501	6	7.3	6	82	10	54	15	18	0	65	1.27
41179434--41179522	24	4.0	22	75	20	78	11	20	0	68	1.19
41181018--41181113	50	2.0	49	86	10	135	58	9	4	28	1.48
41181018--41181112	47	2.0	46	85	10	120	58	9	4	27	1.48
41201221--41201781	116	4.9	114	82	4	612	27	21	24	25	1.99
41201223--41201776	230	2.4	230	81	5	663	27	22	24	25	2.00
41202006--41202144	38	3.5	43	83	14	142	20	2	38	38	1.64
41202038--41202103	17	3.6	17	71	15	60	22	1	37	37	1.64
41202017--41202127	38	2.9	38	94	2	188	19	2	38	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41202055--41202124	21	3.5	21	71	15	76	20	2	37	40	1.67
41203186--41203230	17	2.6	17	92	0	81	22	0	44	33	1.53
41205748--41205847	9	11.4	9	76	9	66	49	19	0	32	1.49
41205943--41206014	17	4.2	17	72	13	58	44	13	1	40	1.53
41205951--41206014	25	2.5	26	87	2	94	43	14	1	40	1.54
41207752--41207821	21	3.4	21	90	2	106	31	17	47	4	1.67
41208163--41208343	43	4.2	43	91	2	249	29	19	25	25	1.98
41208565--41208681	41	2.8	43	80	6	141	28	26	18	26	1.98
41211068--41211140	28	2.5	30	82	14	100	27	15	30	27	1.96
41211099--41211662	174	3.2	174	98	0	1067	29	14	25	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230